Wall clock time and date at job start Tue Mar 31 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47065 * 2 1 4 4 C 1.50695 * 109.47428 * 179.97438 * 3 2 1 5 5 N 1.29428 * 124.80250 * 89.97568 * 4 3 2 6 6 C 1.30943 * 117.36162 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19445 * 359.97438 * 6 5 4 8 8 C 1.46681 * 126.13453 * 180.02562 * 7 6 5 9 9 O 1.21689 * 120.00483 * 189.10329 * 8 7 6 10 10 N 1.34782 * 119.99700 * 9.10051 * 8 7 6 11 11 C 1.46500 * 120.00126 * 6.79893 * 10 8 7 12 12 C 1.46503 * 119.99714 * 186.80959 * 10 8 7 13 13 H 1.09003 * 109.47303 * 359.97438 * 12 10 8 14 14 C 1.53001 * 109.46713 * 239.99641 * 12 10 8 15 15 C 1.50700 * 109.47482 * 119.99636 * 12 10 8 16 16 H 1.08002 * 119.99529 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00311 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99957 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00101 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47004 * 90.00674 * 19 17 15 21 21 H 1.48508 * 109.46819 * 210.00607 * 19 17 15 22 22 H 1.48494 * 109.47129 * 330.00198 * 19 17 15 23 23 S 1.70955 * 124.80549 * 270.33515 * 4 3 2 24 24 H 1.09002 * 109.47434 * 300.00092 * 1 2 3 25 25 H 1.08996 * 109.47505 * 60.00002 * 1 2 3 26 26 H 1.09003 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46942 * 240.00298 * 2 1 3 28 28 H 1.09002 * 109.47037 * 119.99507 * 2 1 3 29 29 H 1.09002 * 109.47069 * 59.99685 * 3 2 1 30 30 H 1.09003 * 109.47169 * 300.00041 * 3 2 1 31 31 H 1.08003 * 122.90211 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47515 * 275.86659 * 11 10 8 33 33 H 1.08997 * 109.46880 * 35.86969 * 11 10 8 34 34 H 1.08996 * 109.46820 * 155.86050 * 11 10 8 35 35 H 1.09004 * 109.47357 * 59.99660 * 14 12 10 36 36 H 1.09004 * 109.47268 * 179.97438 * 14 12 10 37 37 H 1.09001 * 109.47259 * 300.00233 * 14 12 10 38 38 H 0.96999 * 120.00285 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.2861 1.4421 -1.0618 6 6 5.5844 1.4417 -0.8917 7 6 5.9749 1.4426 0.4075 8 6 7.3584 1.4430 0.8948 9 8 7.5866 1.2770 2.0785 10 7 8.3769 1.6271 0.0315 11 6 8.1001 1.9745 -1.3646 12 6 9.7608 1.4797 0.4891 13 1 9.7677 1.2217 1.5482 14 6 10.5099 2.7973 0.2807 15 6 10.4368 0.3873 -0.2988 16 1 9.8904 -0.1436 -1.0643 17 6 11.7531 0.0666 -0.0433 18 7 12.4187 0.7135 0.8885 19 14 12.5913 -1.2869 -1.0205 20 1 13.2274 -0.7037 -2.2289 21 1 13.6290 -1.9352 -0.1788 22 1 11.5839 -2.2980 -1.4304 23 16 4.5221 1.4347 1.4047 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.2839 1.4408 -1.7146 32 1 7.9027 1.0656 -1.9329 33 1 7.2290 2.6281 -1.4105 34 1 8.9626 2.4884 -1.7889 35 1 10.0209 3.5874 0.8506 36 1 11.5394 2.6879 0.6216 37 1 10.5029 3.0557 -0.7783 38 1 13.3446 0.4876 1.0686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173527731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:39 Heat of formation + Delta-G solvation = 14.155694 kcal Electronic energy + Delta-G solvation = -19734.826855 eV Core-core repulsion = 16704.693259 eV Total energy + Delta-G solvation = -3030.133596 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10313 -38.67361 -35.47784 -35.35981 -33.06953 -31.05514 -29.28620 -27.73187 -26.71203 -25.26122 -24.24315 -22.15646 -21.83113 -20.16144 -18.90706 -17.70644 -16.63329 -16.05314 -15.46769 -15.26954 -15.04848 -14.60964 -14.29151 -14.21824 -14.04653 -13.15249 -13.08977 -12.67327 -12.50243 -12.35789 -11.97853 -11.75094 -11.56812 -11.51561 -11.15311 -11.02513 -10.97663 -10.80720 -10.68870 -10.31981 -10.21649 -9.81358 -9.31683 -9.25851 -9.13226 -8.76870 -8.48008 -7.71466 -6.11750 -4.20477 0.42522 1.28486 1.80403 2.66018 3.24344 3.31608 3.34510 3.67820 3.88172 4.05657 4.36840 4.66554 4.72613 4.83306 5.04331 5.19881 5.23997 5.28123 5.39829 5.43480 5.48745 5.56456 5.75747 5.85790 5.88136 5.98984 6.11657 6.19815 6.71409 6.77171 6.98995 7.32413 7.42521 7.65439 7.69953 7.95282 8.11346 8.38558 8.73098 8.90531 9.46226 10.93591 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.003827 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.961600 B = 7314.180305 C = 7581.296336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.042 4.042 4 C 0.028 3.972 5 N -0.476 5.476 6 C 0.056 3.944 7 C -0.270 4.270 8 C 0.578 3.422 9 O -0.547 6.547 10 N -0.575 5.575 11 C 0.069 3.931 12 C 0.260 3.740 13 H 0.066 0.934 14 C -0.148 4.148 15 C -0.529 4.529 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 S 0.206 5.794 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.204 0.796 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.013 0.987 36 H 0.096 0.904 37 H 0.031 0.969 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.174 2.514 -3.473 19.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.083 4.083 4 C -0.247 4.247 5 N -0.191 5.191 6 C -0.100 4.100 7 C -0.395 4.395 8 C 0.363 3.637 9 O -0.427 6.427 10 N -0.306 5.306 11 C -0.074 4.074 12 C 0.160 3.840 13 H 0.083 0.917 14 C -0.206 4.206 15 C -0.567 4.567 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 S 0.463 5.537 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.220 0.780 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.032 0.968 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.314 2.438 -2.170 19.588 hybrid contribution 1.266 -0.748 -1.424 2.047 sum -18.049 1.690 -3.594 18.481 Atomic orbital electron populations 1.21757 0.94987 1.02048 1.02010 1.21552 0.96165 0.95111 1.03108 1.20315 0.84917 0.98798 1.04255 1.27455 1.01698 1.03222 0.92288 1.66206 1.04926 1.16315 1.31642 1.23405 0.91350 0.98703 0.96575 1.26099 0.99766 1.16249 0.97338 1.16766 0.82453 0.78396 0.86096 1.90792 1.84630 1.51653 1.15654 1.48069 1.08006 1.65626 1.08849 1.22130 1.01902 0.99585 0.83792 1.19056 0.73344 0.93861 0.97748 0.91658 1.22112 1.03927 0.96004 0.98581 1.21308 0.96617 1.18377 1.20439 0.92146 1.24889 0.97085 0.96533 0.95192 1.69877 1.10582 1.40825 1.31181 0.86464 0.79214 0.81825 0.79729 1.20538 1.21053 1.19890 1.83937 0.95102 1.64683 1.09943 0.92512 0.92448 0.92361 0.91130 0.91555 0.89657 0.88752 0.78048 0.92548 0.91828 0.89876 0.96782 0.88587 0.94959 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 3 C -0.04 -0.37 5.79 -27.88 -0.16 -0.53 16 4 C 0.03 0.36 6.64 -13.29 -0.09 0.27 16 5 N -0.48 -6.97 10.51 -11.50 -0.12 -7.09 16 6 C 0.06 0.86 9.42 -18.85 -0.18 0.68 16 7 C -0.27 -4.77 6.30 -37.10 -0.23 -5.01 16 8 C 0.58 12.65 7.63 -12.85 -0.10 12.56 16 9 O -0.55 -13.92 16.33 5.20 0.08 -13.83 16 10 N -0.58 -12.48 2.75 -176.81 -0.49 -12.97 16 11 C 0.07 1.16 7.85 59.85 0.47 1.63 16 12 C 0.26 6.63 2.62 -69.08 -0.18 6.44 16 13 H 0.07 1.93 6.92 -51.93 -0.36 1.57 16 14 C -0.15 -3.51 8.96 37.16 0.33 -3.18 16 15 C -0.53 -14.18 8.37 -34.44 -0.29 -14.46 16 16 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 19 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 S 0.21 2.96 23.02 -107.50 -2.48 0.49 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.20 2.81 4.04 -52.48 -0.21 2.60 16 32 H 0.06 0.88 7.17 -51.93 -0.37 0.50 16 33 H 0.06 0.90 5.56 -51.93 -0.29 0.61 16 34 H 0.08 1.38 6.44 -51.93 -0.33 1.05 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 37 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -31.42 323.46 -7.97 -39.39 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.15 Total: -0.86 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.31 Total: -1.62 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.02 Total: -44.32 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.48 Total: 0.49 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.42 -7.97 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173527731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.549 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds