Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47065 * 2 1 4 4 C 1.50695 * 109.47428 * 179.97438 * 3 2 1 5 5 N 1.29428 * 124.80250 * 89.97568 * 4 3 2 6 6 C 1.30943 * 117.36162 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19445 * 359.97438 * 6 5 4 8 8 C 1.46681 * 126.13453 * 180.02562 * 7 6 5 9 9 O 1.21689 * 120.00483 * 189.10329 * 8 7 6 10 10 N 1.34782 * 119.99700 * 9.10051 * 8 7 6 11 11 C 1.46500 * 120.00126 * 6.79893 * 10 8 7 12 12 C 1.46503 * 119.99714 * 186.80959 * 10 8 7 13 13 H 1.09003 * 109.47303 * 359.97438 * 12 10 8 14 14 C 1.53001 * 109.46713 * 239.99641 * 12 10 8 15 15 C 1.50700 * 109.47482 * 119.99636 * 12 10 8 16 16 H 1.08002 * 119.99529 * 0.02562 * 15 12 10 17 17 C 1.37873 * 120.00311 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99957 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00101 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47004 * 90.00674 * 19 17 15 21 21 H 1.48508 * 109.46819 * 210.00607 * 19 17 15 22 22 H 1.48494 * 109.47129 * 330.00198 * 19 17 15 23 23 S 1.70955 * 124.80549 * 270.33515 * 4 3 2 24 24 H 1.09002 * 109.47434 * 300.00092 * 1 2 3 25 25 H 1.08996 * 109.47505 * 60.00002 * 1 2 3 26 26 H 1.09003 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46942 * 240.00298 * 2 1 3 28 28 H 1.09002 * 109.47037 * 119.99507 * 2 1 3 29 29 H 1.09002 * 109.47069 * 59.99685 * 3 2 1 30 30 H 1.09003 * 109.47169 * 300.00041 * 3 2 1 31 31 H 1.08003 * 122.90211 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47515 * 275.86659 * 11 10 8 33 33 H 1.08997 * 109.46880 * 35.86969 * 11 10 8 34 34 H 1.08996 * 109.46820 * 155.86050 * 11 10 8 35 35 H 1.09004 * 109.47357 * 59.99660 * 14 12 10 36 36 H 1.09004 * 109.47268 * 179.97438 * 14 12 10 37 37 H 1.09001 * 109.47259 * 300.00233 * 14 12 10 38 38 H 0.96999 * 120.00285 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.2861 1.4421 -1.0618 6 6 5.5844 1.4417 -0.8917 7 6 5.9749 1.4426 0.4075 8 6 7.3584 1.4430 0.8948 9 8 7.5866 1.2770 2.0785 10 7 8.3769 1.6271 0.0315 11 6 8.1001 1.9745 -1.3646 12 6 9.7608 1.4797 0.4891 13 1 9.7677 1.2217 1.5482 14 6 10.5099 2.7973 0.2807 15 6 10.4368 0.3873 -0.2988 16 1 9.8904 -0.1436 -1.0643 17 6 11.7531 0.0666 -0.0433 18 7 12.4187 0.7135 0.8885 19 14 12.5913 -1.2869 -1.0205 20 1 13.2274 -0.7037 -2.2289 21 1 13.6290 -1.9352 -0.1788 22 1 11.5839 -2.2980 -1.4304 23 16 4.5221 1.4347 1.4047 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.2839 1.4408 -1.7146 32 1 7.9027 1.0656 -1.9329 33 1 7.2290 2.6281 -1.4105 34 1 8.9626 2.4884 -1.7889 35 1 10.0209 3.5874 0.8506 36 1 11.5394 2.6879 0.6216 37 1 10.5029 3.0557 -0.7783 38 1 13.3446 0.4876 1.0686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173527731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -5.572577 kcal Electronic energy + Delta-G solvation = -19735.682337 eV Core-core repulsion = 16704.693259 eV Total energy + Delta-G solvation = -3030.989078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45896 -40.16887 -37.27038 -36.15820 -34.92567 -32.52142 -30.72815 -28.88869 -28.14761 -27.32191 -25.29853 -23.76085 -22.58817 -21.63973 -20.37374 -18.97239 -18.51851 -17.57513 -17.22211 -16.54068 -16.27291 -16.07779 -15.47472 -15.41017 -15.16872 -14.74650 -14.50787 -14.10695 -13.84533 -13.53512 -13.08747 -13.03604 -12.95505 -12.76541 -12.73974 -12.61626 -12.25794 -12.18719 -12.12147 -12.05326 -11.63684 -11.23512 -11.20934 -10.63574 -10.54399 -10.51751 -9.94695 -9.46378 -8.17323 -6.34499 -0.78665 0.10766 0.64718 1.39828 1.42240 1.43471 1.53068 2.11329 2.26709 2.45540 3.03995 3.11002 3.61187 3.84750 4.08385 4.10753 4.16113 4.24313 4.53324 4.55618 4.66467 4.69907 4.80363 4.85314 4.92406 4.95496 4.98701 5.00328 5.24987 5.29054 5.40375 5.46184 5.53179 5.61344 5.97111 6.10221 6.53149 6.61941 6.71953 7.14361 7.38325 8.87458 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.003827 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.961600 B = 7314.180305 C = 7581.296336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.045 4.045 4 C 0.058 3.942 5 N -0.493 5.493 6 C 0.081 3.919 7 C -0.316 4.316 8 C 0.572 3.428 9 O -0.600 6.600 10 N -0.583 5.583 11 C 0.066 3.934 12 C 0.264 3.736 13 H 0.011 0.989 14 C -0.134 4.134 15 C -0.541 4.541 16 H 0.063 0.937 17 C 0.017 3.983 18 N -0.917 5.917 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.271 1.271 23 S 0.213 5.787 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.217 0.783 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.451 2.419 -5.548 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.216 4.216 5 N -0.207 5.207 6 C -0.076 4.076 7 C -0.441 4.441 8 C 0.360 3.640 9 O -0.484 6.484 10 N -0.312 5.312 11 C -0.076 4.076 12 C 0.163 3.837 13 H 0.029 0.971 14 C -0.193 4.193 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.196 1.196 23 S 0.472 5.528 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.233 0.767 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.617 2.361 -4.274 22.161 hybrid contribution 1.811 -0.711 -0.769 2.092 sum -19.806 1.649 -5.043 20.504 Atomic orbital electron populations 1.21732 0.93190 1.02587 1.02910 1.21542 0.97668 0.94212 1.02363 1.20628 0.81866 0.99788 1.06253 1.28261 1.03197 0.99075 0.91087 1.66349 1.04434 1.17964 1.31979 1.23621 0.92071 0.95964 0.95975 1.25633 0.98448 1.21031 0.98944 1.17272 0.84082 0.77196 0.85423 1.90744 1.85711 1.54095 1.17849 1.48023 1.06675 1.65649 1.10868 1.22406 1.03232 1.00943 0.81025 1.18655 0.75832 0.94488 0.94766 0.97096 1.21909 1.02181 0.95380 0.99793 1.21554 0.97002 1.18901 1.20521 0.91871 1.25736 0.97771 0.98702 0.96097 1.70021 1.10850 1.42179 1.32472 0.85418 0.77956 0.78884 0.78535 1.19078 1.21162 1.19586 1.83900 0.93905 1.64655 1.10355 0.91436 0.91740 0.92080 0.92335 0.91964 0.87131 0.87235 0.76711 0.90963 0.88916 0.89689 0.96178 0.91010 0.92921 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 3 C -0.04 -0.63 5.79 29.85 0.17 -0.46 16 4 C 0.06 1.33 6.64 88.46 0.59 1.92 16 5 N -0.49 -13.15 10.51 -190.30 -2.00 -15.15 16 6 C 0.08 2.37 9.42 84.23 0.79 3.16 16 7 C -0.32 -11.08 6.30 23.88 0.15 -10.93 16 8 C 0.57 25.82 7.63 86.45 0.66 26.48 16 9 O -0.60 -32.28 16.33 -4.31 -0.07 -32.35 16 10 N -0.58 -25.70 2.75 -831.51 -2.29 -27.99 16 11 C 0.07 2.10 7.85 127.77 1.00 3.11 16 12 C 0.26 13.96 2.62 44.24 0.12 14.08 16 13 H 0.01 0.70 6.92 -2.39 -0.02 0.68 16 14 C -0.13 -6.51 8.96 71.98 0.64 -5.87 16 15 C -0.54 -29.44 8.37 25.60 0.21 -29.22 16 16 H 0.06 3.32 7.65 -2.91 -0.02 3.29 16 17 C 0.02 0.92 5.30 84.65 0.45 1.37 16 18 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 19 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 S 0.21 5.92 23.02 -56.49 -1.30 4.62 16 24 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.22 5.46 4.04 -2.91 -0.01 5.45 16 32 H 0.07 2.10 7.17 -2.39 -0.02 2.08 16 33 H 0.09 2.42 5.56 -2.39 -0.01 2.41 16 34 H 0.08 2.69 6.44 -2.39 -0.02 2.67 16 35 H 0.02 0.89 8.14 -2.38 -0.02 0.88 16 36 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 37 H 0.05 2.28 6.67 -2.39 -0.02 2.26 16 38 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.76 323.46 3.36 -67.40 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.07 Total: 9.49 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.69 Total: 1.58 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -4.05 Total: -95.65 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.07 Total: -32.35 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -1.30 Total: 4.62 kcal Total: -70.76 3.36 -67.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173527731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.826 kcal (2) G-P(sol) polarization free energy of solvation -70.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds