Wall clock time and date at job start Tue Mar 31 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29026 * 124.91148 * 2 1 4 4 C 1.31787 * 117.12300 * 179.97438 * 3 2 1 5 5 C 1.50694 * 122.74987 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47403 * 305.02605 * 5 4 3 7 7 C 1.52996 * 109.47141 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47006 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99866 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00101 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99874 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47391 * 325.00213 * 11 10 8 13 13 C 1.53000 * 109.46840 * 85.00543 * 11 10 8 14 14 C 1.50699 * 109.47060 * 205.00285 * 11 10 8 15 15 H 1.07999 * 120.00019 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 C 1.33641 * 114.49860 * 0.23512 * 4 3 2 23 23 S 1.70973 * 124.91911 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46488 * 90.00480 * 1 2 3 25 25 H 1.09000 * 109.46841 * 209.99591 * 1 2 3 26 26 H 1.08997 * 109.47493 * 330.00340 * 1 2 3 27 27 H 1.09002 * 109.47477 * 185.02484 * 5 4 3 28 28 H 1.08997 * 109.47435 * 65.03020 * 5 4 3 29 29 H 1.09002 * 109.46730 * 60.00054 * 6 5 4 30 30 H 1.08997 * 109.47163 * 300.00581 * 6 5 4 31 31 H 1.09002 * 109.47281 * 60.00371 * 7 6 5 32 32 H 1.09003 * 109.47162 * 299.99722 * 7 6 5 33 33 H 0.97002 * 119.99716 * 0.02562 * 10 8 7 34 34 H 1.08992 * 109.47399 * 59.99666 * 13 11 10 35 35 H 1.09004 * 109.46724 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.47194 * 299.99493 * 13 11 10 37 37 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 38 38 H 1.08004 * 126.03613 * 179.76906 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8795 0.0005 5 6 4.5306 2.0247 0.0000 6 6 4.2333 2.9496 -1.1820 7 6 5.2282 4.1120 -1.1828 8 6 4.9349 5.0233 -2.3466 9 8 4.0206 4.7680 -3.1014 10 7 5.6887 6.1222 -2.5488 11 6 5.4040 7.0078 -3.6805 12 1 5.0621 6.4148 -4.5289 13 6 4.3150 8.0070 -3.2847 14 6 6.6563 7.7544 -4.0616 15 1 7.5728 7.5858 -3.5157 16 6 6.6321 8.6528 -5.1072 17 7 5.5162 8.8577 -5.7724 18 14 8.1843 9.5788 -5.5791 19 1 8.9373 8.7983 -6.5936 20 1 7.8185 10.9023 -6.1445 21 1 9.0310 9.7719 -4.3745 22 6 3.9354 -0.4005 -0.0040 23 16 2.4857 -1.4019 0.0006 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 5.5448 1.6354 -0.0894 28 1 4.4368 2.5835 0.9312 29 1 3.2191 3.3389 -1.0925 30 1 4.3271 2.3909 -2.1131 31 1 6.2422 3.7223 -1.2725 32 1 5.1347 4.6709 -0.2516 33 1 6.4203 6.3262 -1.9453 34 1 4.6568 8.5998 -2.4365 35 1 4.1028 8.6656 -4.1270 36 1 3.4092 7.4669 -3.0091 37 1 5.4991 9.4901 -6.5078 38 1 4.9546 -0.7579 -0.0079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175945227.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:50 Heat of formation + Delta-G solvation = -19.033774 kcal Electronic energy + Delta-G solvation = -18952.176501 eV Core-core repulsion = 15920.603701 eV Total energy + Delta-G solvation = -3031.572800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11115 -38.80712 -35.09946 -34.38525 -32.37947 -32.11545 -29.41619 -28.56506 -27.19823 -25.21844 -23.46462 -22.01539 -20.58018 -19.86240 -19.26618 -17.73632 -16.94710 -15.75836 -15.48929 -15.39604 -15.09332 -15.02254 -14.24907 -13.84823 -13.78765 -13.30616 -13.08235 -12.76413 -12.46122 -12.41248 -12.25860 -11.85323 -11.63586 -11.29928 -11.16739 -10.99748 -10.94020 -10.66196 -10.53407 -10.27159 -10.20112 -9.76348 -9.57494 -9.01467 -8.92737 -8.80871 -8.51076 -7.82949 -6.09375 -4.18555 0.53867 1.18041 1.54726 2.64700 3.25950 3.32336 3.34331 3.51920 3.88326 4.17293 4.41879 4.71961 4.91562 5.05644 5.06677 5.18415 5.22486 5.26112 5.31708 5.44557 5.59285 5.64456 5.73696 5.80894 5.93395 6.11868 6.35483 6.58543 6.87696 7.02374 7.20661 7.53569 7.62165 7.62759 7.74241 7.96646 8.19506 8.74716 8.83124 9.23010 9.49522 10.96638 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041129 B = 0.002613 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.623968 B =10713.192093 C =11053.886853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.053 3.947 3 N -0.464 5.464 4 C 0.081 3.919 5 C -0.046 4.046 6 C -0.093 4.093 7 C -0.142 4.142 8 C 0.498 3.502 9 O -0.556 6.556 10 N -0.713 5.713 11 C 0.263 3.737 12 H 0.047 0.953 13 C -0.147 4.147 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.263 4.263 23 S 0.098 5.902 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.388 0.612 34 H 0.026 0.974 35 H 0.089 0.911 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -18.715 14.413 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 N -0.179 5.179 4 C -0.051 4.051 5 C -0.086 4.086 6 C -0.132 4.132 7 C -0.182 4.182 8 C 0.283 3.717 9 O -0.436 6.436 10 N -0.360 5.360 11 C 0.161 3.839 12 H 0.065 0.935 13 C -0.205 4.205 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.402 4.402 23 S 0.352 5.648 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.220 0.780 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.539 -19.333 13.693 24.330 hybrid contribution 1.903 1.313 -0.033 2.312 sum -3.636 -18.020 13.659 22.902 Atomic orbital electron populations 1.20462 0.85170 1.04134 1.04105 1.27089 1.01829 0.90746 1.02922 1.66089 1.04643 1.31374 1.15832 1.20348 0.90190 0.94293 1.00233 1.20294 0.95278 0.92684 1.00358 1.21198 1.00179 0.94659 0.97136 1.21690 1.01019 0.97104 0.98385 1.20496 0.82812 0.82072 0.86272 1.90652 1.31184 1.73897 1.47837 1.46541 1.33074 1.24920 1.31499 1.18710 0.94432 0.87092 0.83621 0.93515 1.22070 0.96853 1.00225 1.01382 1.21237 0.95357 1.23970 1.16564 0.92119 1.24905 0.96496 0.96559 0.95853 1.69915 1.25782 1.35356 1.21091 0.86449 0.82826 0.79098 0.78713 1.20586 1.21078 1.19863 1.26801 1.02945 0.95660 1.14786 1.83882 0.98428 1.13294 1.69197 0.89406 0.90202 0.89136 0.90220 0.90050 0.90311 0.91459 0.89588 0.89529 0.78005 0.95526 0.89233 0.96672 0.92613 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.46 36.01 0.38 -0.20 16 2 C 0.05 0.56 7.39 -13.46 -0.10 0.46 16 3 N -0.46 -6.20 10.34 -8.06 -0.08 -6.28 16 4 C 0.08 0.98 6.08 -84.23 -0.51 0.47 16 5 C -0.05 -0.51 5.71 -27.88 -0.16 -0.67 16 6 C -0.09 -1.34 4.40 -26.73 -0.12 -1.46 16 7 C -0.14 -2.01 5.70 -27.88 -0.16 -2.17 16 8 C 0.50 10.19 7.79 -10.98 -0.09 10.10 16 9 O -0.56 -13.86 15.64 5.56 0.09 -13.77 16 10 N -0.71 -15.21 5.07 -54.93 -0.28 -15.49 16 11 C 0.26 6.90 2.56 -69.08 -0.18 6.73 16 12 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 13 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 14 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -25.39 11.32 55.43 0.63 -24.76 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.26 -2.64 11.07 29.12 0.32 -2.32 16 23 S 0.10 0.88 23.18 -107.50 -2.49 -1.62 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.39 7.07 8.54 -40.82 -0.35 6.73 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -33.29 336.46 -8.41 -41.70 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.66 Total: 4.77 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.66 Total: -5.49 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.27 Total: -46.53 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.29 -8.41 -41.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175945227.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.665 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds