Wall clock time and date at job start Tue Mar 31 2020 05:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91704 * 2 1 4 4 C 1.31778 * 117.12461 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.75007 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47125 * 270.00554 * 5 4 3 7 7 O 1.21281 * 120.00245 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99983 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47456 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47325 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46884 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00568 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99604 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00229 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99869 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47352 * 60.00514 * 16 14 12 18 18 H 1.48506 * 109.47198 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47308 * 300.00085 * 16 14 12 20 20 C 1.33641 * 114.50181 * 0.02562 * 4 3 2 21 21 C 1.50703 * 126.03730 * 179.97438 * 20 4 3 22 22 S 1.70982 * 124.91788 * 180.31651 * 2 1 3 23 23 H 1.08992 * 109.47230 * 89.99952 * 1 2 3 24 24 H 1.09008 * 109.46713 * 209.99976 * 1 2 3 25 25 H 1.08996 * 109.46878 * 329.99456 * 1 2 3 26 26 H 1.09005 * 109.46594 * 30.00419 * 5 4 3 27 27 H 1.09000 * 109.46729 * 149.99907 * 5 4 3 28 28 H 0.97005 * 120.00067 * 359.97438 * 8 6 5 29 29 H 1.09007 * 109.46972 * 300.00209 * 9 8 6 30 30 H 1.09003 * 109.47115 * 59.99698 * 9 8 6 31 31 H 1.09005 * 109.46660 * 300.00094 * 10 9 8 32 32 H 1.09003 * 109.47228 * 59.99740 * 10 9 8 33 33 H 1.08994 * 109.46662 * 299.99999 * 11 10 9 34 34 H 1.08996 * 109.46838 * 59.99827 * 11 10 9 35 35 H 0.97008 * 119.99966 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47152 * 90.00002 * 21 20 4 37 37 H 1.09001 * 109.46980 * 330.00102 * 21 20 4 38 38 H 1.09004 * 109.47113 * 210.00083 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0246 -0.0012 6 6 4.8566 2.4061 -1.4221 7 8 4.3442 1.8068 -2.3437 8 7 5.7174 3.4134 -1.6689 9 6 6.0346 3.7841 -3.0502 10 6 7.0290 4.9468 -3.0509 11 6 7.3608 5.3334 -4.4936 12 6 8.3398 6.4791 -4.4941 13 1 8.6906 6.8901 -3.5590 14 6 8.7884 7.0019 -5.6884 15 7 8.3616 6.5012 -6.8271 16 14 10.0024 8.4216 -5.6891 17 1 11.2453 8.0105 -4.9882 18 1 10.3244 8.7970 -7.0894 19 1 9.4023 9.5866 -4.9903 20 6 3.9354 -0.4006 -0.0015 21 6 5.3575 -0.8994 -0.0029 22 16 2.4857 -1.4020 -0.0077 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 4.0908 2.8792 0.5128 27 1 5.4434 1.7222 0.5124 28 1 6.1269 3.8930 -0.9318 29 1 6.4752 2.9294 -3.5637 30 1 5.1219 4.0857 -3.5642 31 1 6.5888 5.8016 -2.5373 32 1 7.9416 4.6447 -2.5370 33 1 7.8011 4.4785 -5.0066 34 1 6.4484 5.6354 -5.0077 35 1 8.6770 6.8693 -7.6673 36 1 5.7011 -1.0203 1.0245 37 1 5.9945 -0.1795 -0.5167 38 1 5.4054 -1.8592 -0.5173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178078166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:37 Heat of formation + Delta-G solvation = -22.061978 kcal Electronic energy + Delta-G solvation = -18875.344963 eV Core-core repulsion = 15843.640850 eV Total energy + Delta-G solvation = -3031.704112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44465 -38.98612 -35.40535 -34.00831 -33.30591 -31.42847 -30.62739 -29.79489 -26.67966 -25.25831 -23.48591 -22.64045 -20.74550 -20.09717 -18.94809 -18.11561 -16.95413 -16.43657 -15.70032 -15.36372 -15.08855 -14.81747 -14.45295 -14.08705 -13.69922 -13.66606 -13.47098 -13.31875 -12.91717 -12.47963 -12.36045 -12.26590 -12.12265 -11.83706 -11.60276 -11.28376 -10.88333 -10.72857 -10.62581 -9.90172 -9.86287 -9.75747 -9.41158 -9.32127 -9.13531 -8.76438 -8.69637 -8.37156 -6.01780 -4.05096 0.55552 1.16856 1.55279 2.56438 2.80086 3.31934 3.36677 3.38321 3.51069 3.91347 4.44183 4.58646 4.78634 4.80955 4.97784 5.07479 5.15081 5.20137 5.26221 5.33372 5.33848 5.55892 5.64049 5.72702 5.74434 5.78834 6.04417 6.16757 6.49546 6.60260 6.83915 7.00564 7.63169 7.63221 7.71961 7.76088 7.96849 8.37012 8.42325 9.01444 9.59052 11.09497 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041320 B = 0.002525 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.482315 B =11088.198914 C =11269.764700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.044 3.956 3 N -0.459 5.459 4 C 0.086 3.914 5 C -0.069 4.069 6 C 0.512 3.488 7 O -0.535 6.535 8 N -0.727 5.727 9 C 0.117 3.883 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.209 4.209 21 C -0.076 4.076 22 S 0.109 5.891 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.399 0.601 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.404 -15.987 18.575 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.234 4.234 3 N -0.174 5.174 4 C -0.046 4.046 5 C -0.112 4.112 6 C 0.296 3.704 7 O -0.412 6.412 8 N -0.378 5.378 9 C -0.005 4.005 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.330 4.330 21 C -0.135 4.135 22 S 0.364 5.636 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.232 0.768 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.257 -16.968 17.677 27.398 hybrid contribution 1.438 1.793 0.143 2.303 sum -10.819 -15.176 17.820 25.786 Atomic orbital electron populations 1.20422 0.85215 1.03977 1.03959 1.26811 1.01552 0.90754 1.04274 1.65985 1.04378 1.31705 1.15300 1.19305 0.89739 0.92804 1.02753 1.20212 0.97999 0.96937 0.96014 1.20313 0.79124 0.80265 0.90652 1.90718 1.51440 1.52811 1.46205 1.46177 1.46088 1.35369 1.10158 1.21636 0.99510 0.98595 0.80793 1.21887 0.96562 0.95048 1.02334 1.19024 0.96845 0.96537 0.88967 1.21167 1.25960 1.16731 0.92290 0.92684 1.25033 0.96641 0.97133 0.95660 1.69957 1.44184 1.41856 0.97310 0.86637 0.81565 0.82684 0.76975 1.20237 1.21269 1.20233 1.25583 1.00295 0.95550 1.11562 1.20258 0.88662 1.01945 1.02645 1.83771 0.97681 1.12669 1.69438 0.89580 0.90247 0.89306 0.87174 0.87361 0.76773 0.91851 0.91855 0.92699 0.92714 0.96307 0.96300 0.92856 0.90459 0.90200 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.46 36.01 0.38 -0.19 16 2 C 0.04 0.51 7.39 -13.46 -0.10 0.41 16 3 N -0.46 -6.43 10.53 -8.05 -0.08 -6.52 16 4 C 0.09 1.13 5.23 -84.22 -0.44 0.69 16 5 C -0.07 -0.78 5.63 -29.03 -0.16 -0.94 16 6 C 0.51 7.76 7.82 -10.99 -0.09 7.68 16 7 O -0.54 -10.58 16.03 5.56 0.09 -10.49 16 8 N -0.73 -10.39 5.56 -60.29 -0.33 -10.72 16 9 C 0.12 2.10 5.67 -4.04 -0.02 2.07 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 C -0.21 -2.42 6.59 -35.92 -0.24 -2.65 16 21 C -0.08 -0.67 9.81 36.01 0.35 -0.32 16 22 S 0.11 1.10 23.18 -107.50 -2.49 -1.39 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.11 0.87 7.35 -51.93 -0.38 0.48 16 28 H 0.40 4.40 8.47 -40.82 -0.35 4.05 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.75 7.43 -51.93 -0.39 0.37 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -35.11 339.88 -8.72 -43.83 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.73 Total: -1.37 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.01 Total: -8.72 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.32 Total: -43.49 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.49 Total: -1.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.11 -8.72 -43.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178078166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.770 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds