Wall clock time and date at job start Tue Mar 31 2020 05:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91704 * 2 1 4 4 C 1.31778 * 117.12461 * 180.02562 * 3 2 1 5 5 C 1.50705 * 122.75007 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47125 * 270.00554 * 5 4 3 7 7 O 1.21281 * 120.00245 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99983 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47456 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47325 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46884 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00568 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99604 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00229 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99869 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47352 * 60.00514 * 16 14 12 18 18 H 1.48506 * 109.47198 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47308 * 300.00085 * 16 14 12 20 20 C 1.33641 * 114.50181 * 0.02562 * 4 3 2 21 21 C 1.50703 * 126.03730 * 179.97438 * 20 4 3 22 22 S 1.70982 * 124.91788 * 180.31651 * 2 1 3 23 23 H 1.08992 * 109.47230 * 89.99952 * 1 2 3 24 24 H 1.09008 * 109.46713 * 209.99976 * 1 2 3 25 25 H 1.08996 * 109.46878 * 329.99456 * 1 2 3 26 26 H 1.09005 * 109.46594 * 30.00419 * 5 4 3 27 27 H 1.09000 * 109.46729 * 149.99907 * 5 4 3 28 28 H 0.97005 * 120.00067 * 359.97438 * 8 6 5 29 29 H 1.09007 * 109.46972 * 300.00209 * 9 8 6 30 30 H 1.09003 * 109.47115 * 59.99698 * 9 8 6 31 31 H 1.09005 * 109.46660 * 300.00094 * 10 9 8 32 32 H 1.09003 * 109.47228 * 59.99740 * 10 9 8 33 33 H 1.08994 * 109.46662 * 299.99999 * 11 10 9 34 34 H 1.08996 * 109.46838 * 59.99827 * 11 10 9 35 35 H 0.97008 * 119.99966 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47152 * 90.00002 * 21 20 4 37 37 H 1.09001 * 109.46980 * 330.00102 * 21 20 4 38 38 H 1.09004 * 109.47113 * 210.00083 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0246 -0.0012 6 6 4.8566 2.4061 -1.4221 7 8 4.3442 1.8068 -2.3437 8 7 5.7174 3.4134 -1.6689 9 6 6.0346 3.7841 -3.0502 10 6 7.0290 4.9468 -3.0509 11 6 7.3608 5.3334 -4.4936 12 6 8.3398 6.4791 -4.4941 13 1 8.6906 6.8901 -3.5590 14 6 8.7884 7.0019 -5.6884 15 7 8.3616 6.5012 -6.8271 16 14 10.0024 8.4216 -5.6891 17 1 11.2453 8.0105 -4.9882 18 1 10.3244 8.7970 -7.0894 19 1 9.4023 9.5866 -4.9903 20 6 3.9354 -0.4006 -0.0015 21 6 5.3575 -0.8994 -0.0029 22 16 2.4857 -1.4020 -0.0077 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 4.0908 2.8792 0.5128 27 1 5.4434 1.7222 0.5124 28 1 6.1269 3.8930 -0.9318 29 1 6.4752 2.9294 -3.5637 30 1 5.1219 4.0857 -3.5642 31 1 6.5888 5.8016 -2.5373 32 1 7.9416 4.6447 -2.5370 33 1 7.8011 4.4785 -5.0066 34 1 6.4484 5.6354 -5.0077 35 1 8.6770 6.8693 -7.6673 36 1 5.7011 -1.0203 1.0245 37 1 5.9945 -0.1795 -0.5167 38 1 5.4054 -1.8592 -0.5173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178078166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:36 Heat of formation + Delta-G solvation = -46.261843 kcal Electronic energy + Delta-G solvation = -18876.394348 eV Core-core repulsion = 15843.640850 eV Total energy + Delta-G solvation = -3032.753497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.41422 -40.13353 -36.97217 -35.19329 -34.82559 -33.13142 -31.42447 -30.77979 -28.42453 -26.16276 -25.00532 -23.76057 -22.32327 -21.47346 -19.81229 -18.99017 -18.53027 -18.06743 -16.97100 -16.73719 -16.45096 -15.95372 -15.82859 -15.42631 -14.72744 -14.46162 -14.26829 -14.24776 -14.13600 -13.79814 -13.69535 -13.55497 -13.12105 -13.04421 -12.79971 -12.68619 -12.55919 -12.41803 -12.09019 -11.67462 -11.60030 -11.26858 -10.93130 -10.60833 -10.55458 -10.14845 -10.11060 -9.52659 -8.19871 -6.31778 -0.26619 0.38981 0.72855 1.41527 1.44820 1.52604 1.61699 1.63659 2.34758 2.44320 3.13795 3.15283 3.73721 3.97191 4.03470 4.09104 4.19950 4.20636 4.40827 4.47632 4.54068 4.60959 4.64571 4.67742 4.89331 4.91973 4.94013 4.99944 5.08933 5.16345 5.27635 5.42933 5.52142 5.69659 5.83384 6.21328 6.57775 6.79978 6.85842 7.26096 7.38031 8.92176 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041320 B = 0.002525 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.482315 B =11088.198914 C =11269.764700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.028 3.972 3 N -0.497 5.497 4 C 0.056 3.944 5 C -0.059 4.059 6 C 0.512 3.488 7 O -0.586 6.586 8 N -0.713 5.713 9 C 0.131 3.869 10 C -0.101 4.101 11 C 0.023 3.977 12 C -0.542 4.542 13 H 0.068 0.932 14 C -0.005 4.005 15 N -0.937 5.937 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.221 4.221 21 C -0.076 4.076 22 S 0.141 5.859 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.418 0.582 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.072 0.928 33 H -0.008 1.008 34 H -0.011 1.011 35 H 0.263 0.737 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 -15.959 20.936 28.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.250 4.250 3 N -0.212 5.212 4 C -0.076 4.076 5 C -0.101 4.101 6 C 0.299 3.701 7 O -0.466 6.466 8 N -0.365 5.365 9 C 0.007 3.993 10 C -0.138 4.138 11 C -0.015 4.015 12 C -0.579 4.579 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.577 5.577 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.343 4.343 21 C -0.135 4.135 22 S 0.397 5.603 23 H 0.107 0.893 24 H 0.124 0.876 25 H 0.109 0.891 26 H 0.144 0.856 27 H 0.163 0.837 28 H 0.256 0.744 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.010 0.990 34 H 0.007 0.993 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.515 -16.930 20.096 28.689 hybrid contribution 1.151 1.699 -0.609 2.141 sum -10.364 -15.232 19.486 26.816 Atomic orbital electron populations 1.20580 0.83069 1.05399 1.04550 1.27449 1.03108 0.90964 1.03451 1.66020 1.05154 1.33205 1.16856 1.19617 0.89963 0.93877 1.04114 1.20251 0.99441 0.97302 0.93095 1.21031 0.77908 0.79248 0.91935 1.90696 1.53253 1.54504 1.48172 1.45927 1.46043 1.35442 1.09125 1.21196 0.97976 0.97390 0.82753 1.21592 0.97777 0.96030 0.98435 1.18944 0.95014 0.95157 0.92345 1.21660 1.26156 1.17214 0.92920 0.91381 1.26051 0.98737 1.00185 0.95235 1.70114 1.45827 1.43666 0.98078 0.85452 0.79157 0.79049 0.77092 1.18859 1.21225 1.19016 1.26026 1.01965 0.95678 1.10582 1.20362 0.87058 1.01816 1.04282 1.83569 0.96623 1.11514 1.68601 0.89261 0.87607 0.89123 0.85603 0.83734 0.74440 0.93295 0.93943 0.91366 0.90965 0.99004 0.99274 0.92809 0.87840 0.90863 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.46 71.24 0.75 -0.32 16 2 C 0.03 0.62 7.39 88.52 0.65 1.27 16 3 N -0.50 -13.72 10.53 -179.39 -1.89 -15.61 16 4 C 0.06 1.41 5.23 41.52 0.22 1.63 16 5 C -0.06 -1.22 5.63 29.10 0.16 -1.06 16 6 C 0.51 15.16 7.82 87.66 0.69 15.84 16 7 O -0.59 -23.57 16.03 -3.03 -0.05 -23.62 16 8 N -0.71 -19.49 5.56 -463.05 -2.57 -22.06 16 9 C 0.13 4.72 5.67 86.38 0.49 5.21 16 10 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 11 C 0.02 1.21 4.97 29.85 0.15 1.36 16 12 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 13 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 14 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 15 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 16 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 C -0.22 -4.83 6.59 24.64 0.16 -4.67 16 21 C -0.08 -1.20 9.81 71.24 0.70 -0.50 16 22 S 0.14 2.67 23.18 -56.49 -1.31 1.36 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.14 1.86 7.35 -2.39 -0.02 1.85 16 28 H 0.42 8.14 8.47 -92.70 -0.79 7.36 16 29 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.26 7.43 -2.39 -0.02 1.24 16 38 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -78.02 339.88 1.59 -76.43 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.27 Total: 9.90 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.82 Total: -14.82 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -4.18 Total: -95.11 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.31 Total: 1.36 kcal Total: -78.02 1.59 -76.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178078166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.167 kcal (2) G-P(sol) polarization free energy of solvation -78.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds