Wall clock time and date at job start Tue Mar 31 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21683 * 120.00149 * 359.97438 * 14 13 3 16 16 C 1.46683 * 119.99693 * 179.97438 * 14 13 3 17 17 C 1.35666 * 126.13274 * 0.02562 * 16 14 13 18 18 N 1.30939 * 114.18934 * 179.97438 * 17 16 14 19 19 C 1.29428 * 117.36588 * 0.02562 * 18 17 16 20 20 C 1.50701 * 124.80254 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47336 * 299.97915 * 20 19 18 22 22 C 1.53004 * 109.46815 * 59.97513 * 20 19 18 23 23 S 1.70945 * 110.39083 * 359.72422 * 19 18 17 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 31 31 H 1.08002 * 122.89920 * 359.97438 * 17 16 14 32 32 H 1.08994 * 109.47243 * 179.97438 * 20 19 18 33 33 H 1.08993 * 109.47752 * 59.99937 * 21 20 19 34 34 H 1.09004 * 109.46936 * 179.97438 * 21 20 19 35 35 H 1.09001 * 109.47110 * 299.99583 * 21 20 19 36 36 H 1.09007 * 109.47476 * 60.00164 * 22 20 19 37 37 H 1.09004 * 109.47147 * 179.97438 * 22 20 19 38 38 H 1.08992 * 109.47572 * 299.99856 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3422 2.6319 -0.4314 16 6 0.0473 3.3205 -2.6203 17 6 0.8111 3.4287 -3.7363 18 7 0.2310 4.0630 -4.7240 19 6 -0.9705 4.5013 -4.5256 20 6 -1.7919 5.2503 -5.5432 21 6 -1.0642 6.5364 -5.9393 22 6 -1.9909 4.3747 -6.7821 23 16 -1.4969 4.1032 -2.9487 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 2.2720 2.1231 -1.9978 31 1 1.8111 3.0264 -3.8040 32 1 -2.7626 5.4993 -5.1145 33 1 -0.0935 6.2875 -6.3681 34 1 -1.6581 7.0779 -6.6757 35 1 -0.9224 7.1602 -5.0568 36 1 -2.5094 3.4583 -6.5000 37 1 -2.5854 4.9162 -7.5180 38 1 -1.0203 4.1257 -7.2108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183794182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:56 Heat of formation + Delta-G solvation = -4.886260 kcal Electronic energy + Delta-G solvation = -19821.524955 eV Core-core repulsion = 16790.565637 eV Total energy + Delta-G solvation = -3030.959317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10309 -38.96557 -35.65915 -35.34315 -32.52458 -31.77654 -29.74406 -27.44688 -27.43781 -25.96827 -22.94056 -22.57284 -21.51862 -19.99952 -19.14480 -18.11191 -17.25027 -16.18797 -15.78930 -15.26138 -15.01118 -14.62462 -14.44421 -14.27043 -13.81982 -13.47997 -13.15108 -12.96626 -12.45752 -12.34068 -12.01774 -11.91629 -11.82082 -11.57307 -11.48257 -11.27907 -11.11814 -10.95943 -10.67010 -9.99293 -9.96635 -9.56751 -9.39941 -9.31103 -9.23881 -8.92310 -8.79322 -8.16346 -6.24383 -4.27588 0.31740 1.17631 1.69621 2.55622 3.21130 3.33437 3.37969 3.58899 3.85234 3.95008 4.28517 4.55166 4.74186 4.78467 5.08961 5.13501 5.19674 5.37245 5.40188 5.50814 5.56872 5.65005 5.90753 5.92701 5.95428 5.98788 6.10977 6.13950 6.61246 6.65331 6.77883 6.90700 7.16878 7.22766 7.44028 7.60075 8.05428 8.42504 8.68460 8.79760 9.35469 10.87540 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034849 B = 0.004007 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.274184 B = 6986.372604 C = 7372.305506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.684 5.684 14 C 0.579 3.421 15 O -0.544 6.544 16 C -0.277 4.277 17 C 0.083 3.917 18 N -0.472 5.472 19 C 0.036 3.964 20 C -0.016 4.016 21 C -0.140 4.140 22 C -0.140 4.140 23 S 0.210 5.790 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.268 0.732 30 H 0.396 0.604 31 H 0.182 0.818 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 7.045 -13.857 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.141 3.859 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.332 5.332 14 C 0.363 3.637 15 O -0.424 6.424 16 C -0.402 4.402 17 C -0.074 4.074 18 N -0.186 5.186 19 C -0.239 4.239 20 C -0.038 4.038 21 C -0.199 4.199 22 C -0.199 4.199 23 S 0.469 5.531 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.230 0.770 31 H 0.199 0.801 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.422 7.226 -12.973 21.409 hybrid contribution 0.971 -0.935 0.400 1.407 sum -14.450 6.291 -12.573 20.161 Atomic orbital electron populations 1.21884 0.96927 0.99162 1.02229 1.22297 0.94379 0.99782 1.01306 1.19233 0.95836 0.88549 0.82295 0.93023 1.21021 0.88392 1.40089 1.08031 0.90078 1.24820 0.94878 0.95072 0.97629 1.69860 1.08681 1.44312 1.29815 0.86910 0.80981 0.79996 0.80924 1.20159 1.22081 1.18421 1.45998 1.13921 1.55053 1.18254 1.16729 0.83144 0.78897 0.84945 1.90810 1.51510 1.60533 1.39531 1.26064 0.99718 1.12591 1.01779 1.22211 1.01166 0.97319 0.86707 1.66001 1.08345 1.12397 1.31829 1.27481 0.95294 1.02311 0.98774 1.19844 0.96449 0.94711 0.92840 1.21806 1.01258 0.95168 1.01660 1.21809 1.02892 0.99195 0.95977 1.83976 1.13818 1.47155 1.08174 0.94822 0.93073 0.92784 0.92568 0.92146 0.92204 0.77039 0.80089 0.89305 0.91313 0.91657 0.92439 0.92495 0.91654 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.20 16 3 C 0.24 5.72 1.83 -69.08 -0.13 5.60 16 4 H 0.05 1.34 6.64 -51.93 -0.34 0.99 16 5 C -0.54 -14.32 9.31 -34.44 -0.32 -14.64 16 6 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 9 Si 0.88 21.52 24.41 -169.99 -4.15 17.37 16 10 H -0.27 -6.49 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.68 -13.54 5.01 -56.24 -0.28 -13.82 16 14 C 0.58 11.15 6.35 -12.85 -0.08 11.07 16 15 O -0.54 -11.99 14.10 5.20 0.07 -11.91 16 16 C -0.28 -4.37 6.48 -37.09 -0.24 -4.61 16 17 C 0.08 1.17 10.93 -18.85 -0.21 0.97 16 18 N -0.47 -6.33 10.49 -11.50 -0.12 -6.46 16 19 C 0.04 0.43 5.90 -13.29 -0.08 0.35 16 20 C -0.02 -0.14 3.35 -91.77 -0.31 -0.44 16 21 C -0.14 -1.08 9.17 37.16 0.34 -0.74 16 22 C -0.14 -1.06 9.17 37.16 0.34 -0.72 16 23 S 0.21 2.73 23.00 -107.50 -2.47 0.26 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 1.02 5.64 -51.93 -0.29 0.72 16 26 H 0.05 1.14 7.84 -51.93 -0.41 0.74 16 27 H 0.06 1.30 3.21 -51.93 -0.17 1.13 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.40 6.88 7.25 -40.82 -0.30 6.58 16 31 H 0.18 2.21 7.15 -52.49 -0.38 1.83 16 32 H 0.09 0.60 8.12 -51.93 -0.42 0.17 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -31.05 320.27 -7.24 -38.28 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.29 Total: 3.65 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.60 Total: -6.84 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.37 Total: -45.64 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.15 Total: 17.37 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.47 Total: 0.26 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.05 -7.24 -38.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183794182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.398 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds