Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21683 * 120.00149 * 359.97438 * 14 13 3 16 16 C 1.46683 * 119.99693 * 179.97438 * 14 13 3 17 17 C 1.35666 * 126.13274 * 0.02562 * 16 14 13 18 18 N 1.30939 * 114.18934 * 179.97438 * 17 16 14 19 19 C 1.29428 * 117.36588 * 0.02562 * 18 17 16 20 20 C 1.50701 * 124.80254 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47336 * 299.97915 * 20 19 18 22 22 C 1.53004 * 109.46815 * 59.97513 * 20 19 18 23 23 S 1.70945 * 110.39083 * 359.72422 * 19 18 17 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 31 31 H 1.08002 * 122.89920 * 359.97438 * 17 16 14 32 32 H 1.08994 * 109.47243 * 179.97438 * 20 19 18 33 33 H 1.08993 * 109.47752 * 59.99937 * 21 20 19 34 34 H 1.09004 * 109.46936 * 179.97438 * 21 20 19 35 35 H 1.09001 * 109.47110 * 299.99583 * 21 20 19 36 36 H 1.09007 * 109.47476 * 60.00164 * 22 20 19 37 37 H 1.09004 * 109.47147 * 179.97438 * 22 20 19 38 38 H 1.08992 * 109.47572 * 299.99856 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3422 2.6319 -0.4314 16 6 0.0473 3.3205 -2.6203 17 6 0.8111 3.4287 -3.7363 18 7 0.2310 4.0630 -4.7240 19 6 -0.9705 4.5013 -4.5256 20 6 -1.7919 5.2503 -5.5432 21 6 -1.0642 6.5364 -5.9393 22 6 -1.9909 4.3747 -6.7821 23 16 -1.4969 4.1032 -2.9487 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 2.2720 2.1231 -1.9978 31 1 1.8111 3.0264 -3.8040 32 1 -2.7626 5.4993 -5.1145 33 1 -0.0935 6.2875 -6.3681 34 1 -1.6581 7.0779 -6.6757 35 1 -0.9224 7.1602 -5.0568 36 1 -2.5094 3.4583 -6.5000 37 1 -2.5854 4.9162 -7.5180 38 1 -1.0203 4.1257 -7.2108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183794182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -26.184938 kcal Electronic energy + Delta-G solvation = -19822.448535 eV Core-core repulsion = 16790.565637 eV Total energy + Delta-G solvation = -3031.882897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32523 -40.37195 -37.17374 -36.36885 -34.45836 -33.47993 -31.00955 -29.26629 -28.02460 -27.02076 -24.72028 -23.79652 -22.80881 -21.58216 -20.55807 -19.13645 -18.85814 -17.81200 -17.46094 -16.58776 -16.25150 -16.04483 -15.61567 -15.28800 -15.12852 -14.98108 -14.65367 -14.17821 -13.87805 -13.72929 -13.63264 -13.02662 -12.94632 -12.80789 -12.64523 -12.60961 -12.42782 -12.11873 -11.93751 -11.87857 -11.48816 -11.27789 -11.19270 -10.87868 -10.56481 -10.51374 -10.03577 -9.81275 -8.39580 -6.45855 -0.78680 0.11251 0.63879 1.26589 1.34963 1.41761 1.44541 2.17774 2.24906 2.40029 2.96085 2.99253 3.75374 3.81346 4.07266 4.14918 4.16924 4.20846 4.29055 4.43439 4.48923 4.78723 4.84481 4.84555 4.97062 4.97181 4.99894 5.07675 5.12052 5.18613 5.35115 5.36750 5.42146 5.47978 5.55547 6.09364 6.53948 6.55366 6.72483 7.13384 7.29532 8.75501 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034849 B = 0.004007 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.274184 B = 6986.372604 C = 7372.305506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.252 3.748 4 H 0.026 0.974 5 C -0.536 4.536 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.935 3.065 10 H -0.258 1.258 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.686 5.686 14 C 0.584 3.416 15 O -0.576 6.576 16 C -0.318 4.318 17 C 0.102 3.898 18 N -0.490 5.490 19 C 0.058 3.942 20 C -0.021 4.021 21 C -0.138 4.138 22 C -0.137 4.137 23 S 0.225 5.775 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.271 0.729 30 H 0.406 0.594 31 H 0.194 0.806 32 H 0.113 0.887 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.499 7.287 -15.399 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.147 3.853 4 H 0.044 0.956 5 C -0.574 4.574 6 H 0.076 0.924 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.184 1.184 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.335 5.335 14 C 0.370 3.630 15 O -0.459 6.459 16 C -0.442 4.442 17 C -0.057 4.057 18 N -0.204 5.204 19 C -0.216 4.216 20 C -0.043 4.043 21 C -0.197 4.197 22 C -0.196 4.196 23 S 0.485 5.515 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.242 0.758 31 H 0.211 0.789 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.598 7.474 -14.542 24.021 hybrid contribution 1.614 -0.874 0.712 1.969 sum -15.983 6.600 -13.830 22.142 Atomic orbital electron populations 1.21768 0.95259 1.00690 1.01483 1.22216 0.95804 0.98270 1.01309 1.18869 0.93466 0.89746 0.83204 0.95572 1.21250 0.90095 1.38881 1.07173 0.92436 1.25530 0.95744 0.95783 0.99787 1.69969 1.10272 1.45963 1.30855 0.86051 0.79341 0.80051 0.78330 1.18365 1.22010 1.18391 1.45788 1.14811 1.55421 1.17447 1.17013 0.82208 0.78032 0.85708 1.90782 1.52283 1.61762 1.41030 1.25676 1.02055 1.15551 1.00937 1.22459 1.01383 0.95772 0.86109 1.66123 1.09214 1.13491 1.31575 1.28256 0.94752 1.00006 0.98603 1.20176 0.96989 0.94742 0.92432 1.21808 1.00947 0.94783 1.02125 1.21807 1.02576 0.99304 0.95904 1.83885 1.12300 1.46609 1.08720 0.92059 0.93147 0.94231 0.93452 0.91155 0.91996 0.75821 0.78935 0.86881 0.92723 0.89027 0.92834 0.92690 0.89063 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.51 71.98 0.61 -4.61 16 2 C -0.14 -5.92 5.11 30.60 0.16 -5.76 16 3 C 0.25 11.88 1.83 44.25 0.08 11.96 16 4 H 0.03 1.38 6.64 -2.39 -0.02 1.37 16 5 C -0.54 -29.11 9.31 25.60 0.24 -28.87 16 6 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 7 C 0.03 1.78 5.45 84.66 0.46 2.24 16 8 N -0.93 -55.73 13.96 21.45 0.30 -55.44 16 9 Si 0.94 44.48 24.41 68.60 1.67 46.16 16 10 H -0.26 -11.51 6.83 99.48 0.68 -10.83 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.26 -12.24 6.53 99.48 0.65 -11.59 16 13 N -0.69 -27.31 5.01 -450.06 -2.25 -29.56 16 14 C 0.58 22.50 6.35 86.45 0.55 23.05 16 15 O -0.58 -25.53 14.10 -4.30 -0.06 -25.59 16 16 C -0.32 -9.82 6.48 23.88 0.15 -9.67 16 17 C 0.10 2.75 10.93 84.23 0.92 3.67 16 18 N -0.49 -12.37 10.49 -190.30 -2.00 -14.37 16 19 C 0.06 1.25 5.90 88.46 0.52 1.77 16 20 C -0.02 -0.29 3.35 -11.54 -0.04 -0.33 16 21 C -0.14 -1.73 9.17 71.98 0.66 -1.07 16 22 C -0.14 -1.66 9.17 71.98 0.66 -1.00 16 23 S 0.22 5.52 23.00 -56.49 -1.30 4.22 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.95 5.64 -2.39 -0.01 1.93 16 26 H 0.04 1.63 7.84 -2.38 -0.02 1.61 16 27 H 0.05 2.12 3.21 -2.39 -0.01 2.11 16 28 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 30 H 0.41 14.22 7.25 -92.71 -0.67 13.55 16 31 H 0.19 4.54 7.15 -2.91 -0.02 4.52 16 32 H 0.11 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -67.32 320.27 1.66 -65.66 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.32 Total: 17.55 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 4.98 Total: -8.63 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -3.95 Total: -99.36 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.06 Total: -25.59 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.67 Total: 46.16 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -1.30 Total: 4.22 kcal Total: -67.32 1.66 -65.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183794182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.473 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds