Wall clock time and date at job start Tue Mar 31 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 C 1.50700 * 109.46817 * 180.02562 * 3 2 1 5 5 N 1.29421 * 124.80914 * 90.02556 * 4 3 2 6 6 C 1.30942 * 117.36660 * 179.97438 * 5 4 3 7 7 C 1.35662 * 114.18914 * 359.97438 * 6 5 4 8 8 C 1.46688 * 126.12971 * 179.97438 * 7 6 5 9 9 O 1.21684 * 120.00037 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99810 * 0.30382 * 8 7 6 11 11 C 1.46502 * 119.99989 * 179.72583 * 10 8 7 12 12 H 1.09006 * 109.47020 * 34.99274 * 11 10 8 13 13 C 1.50693 * 109.47389 * 154.99646 * 11 10 8 14 14 H 1.07998 * 120.00241 * 5.45022 * 13 11 10 15 15 C 1.37880 * 119.99971 * 185.45343 * 13 11 10 16 16 N 1.31516 * 120.00347 * 9.46717 * 15 13 11 17 17 Si 1.86806 * 119.99689 * 189.47007 * 15 13 11 18 18 H 1.48502 * 109.47240 * 84.99351 * 17 15 13 19 19 H 1.48509 * 109.46782 * 204.98907 * 17 15 13 20 20 H 1.48492 * 109.47506 * 324.99068 * 17 15 13 21 21 C 1.53002 * 109.46811 * 274.99896 * 11 10 8 22 22 C 1.52995 * 109.47344 * 64.90162 * 21 11 10 23 23 S 1.70958 * 124.79722 * 270.29234 * 4 3 2 24 24 H 1.08994 * 109.47019 * 299.99800 * 1 2 3 25 25 H 1.08997 * 109.47445 * 60.00006 * 1 2 3 26 26 H 1.09007 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46846 * 239.99779 * 2 1 3 28 28 H 1.08994 * 109.46956 * 119.99926 * 2 1 3 29 29 H 1.08994 * 109.47150 * 60.00280 * 3 2 1 30 30 H 1.09006 * 109.47022 * 299.99975 * 3 2 1 31 31 H 1.08000 * 122.90847 * 179.97438 * 6 5 4 32 32 H 0.97001 * 120.00391 * 359.72207 * 10 8 7 33 33 H 0.96994 * 120.00120 * 179.97438 * 16 15 13 34 34 H 1.09009 * 109.46933 * 184.89828 * 21 11 10 35 35 H 1.08999 * 109.47088 * 304.89293 * 21 11 10 36 36 H 1.09006 * 109.47131 * 180.02562 * 22 21 11 37 37 H 1.09009 * 109.46833 * 299.99727 * 22 21 11 38 38 H 1.08999 * 109.47737 * 59.99528 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2854 1.4432 -1.0636 6 6 5.5838 1.4436 -0.8945 7 6 5.9753 1.4438 0.4044 8 6 7.3592 1.4438 0.8907 9 8 7.5839 1.4435 2.0866 10 7 8.3818 1.4496 0.0129 11 6 9.7640 1.4556 0.4985 12 1 9.8305 0.8655 1.4126 13 6 10.6676 0.8606 -0.5505 14 1 10.2692 0.5939 -1.5182 15 6 12.0030 0.6566 -0.2747 16 7 12.4510 0.8037 0.9530 17 14 13.1761 0.1712 -1.6451 18 1 13.6531 1.3917 -2.3438 19 1 14.3366 -0.5550 -1.0693 20 1 12.4714 -0.7089 -2.6115 21 6 10.1966 2.8944 0.7877 22 6 9.3589 3.4575 1.9375 23 16 4.5232 1.4351 1.4028 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.2827 1.4437 -1.7179 32 1 8.2027 1.4498 -0.9405 33 1 13.3904 0.6598 1.1470 34 1 11.2506 2.9080 1.0655 35 1 10.0478 3.5046 -0.1031 36 1 9.6669 4.4827 2.1432 37 1 8.3049 3.4439 1.6597 38 1 9.5077 2.8473 2.8283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183968050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:43 Heat of formation + Delta-G solvation = -17.109066 kcal Electronic energy + Delta-G solvation = -19518.565912 eV Core-core repulsion = 16487.076574 eV Total energy + Delta-G solvation = -3031.489338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95177 -38.72543 -35.41265 -35.07655 -32.51938 -31.48756 -30.31936 -28.17827 -26.74498 -24.51387 -23.13857 -22.05045 -21.54552 -19.92308 -19.16094 -18.05303 -17.25928 -15.95599 -15.41683 -15.25281 -15.04546 -14.45090 -14.32654 -14.27726 -14.06068 -13.27351 -13.20291 -12.73778 -12.38114 -12.12566 -11.96020 -11.59532 -11.50674 -11.44567 -11.38807 -11.04854 -11.03408 -10.81932 -10.40828 -10.26017 -9.91637 -9.70401 -9.33849 -9.18433 -9.14268 -8.84351 -8.52140 -7.94247 -6.18337 -4.24162 0.38143 1.24570 1.76654 2.61185 3.23591 3.30557 3.31801 3.74101 3.94949 4.07221 4.36216 4.64035 4.70452 4.79110 5.14936 5.16911 5.23390 5.29491 5.41194 5.46912 5.52550 5.73602 5.83561 5.96785 6.08768 6.30957 6.35130 6.55037 6.95077 7.10883 7.24675 7.32140 7.54216 7.64516 7.65570 7.77524 8.01417 8.53893 8.72305 8.98412 9.41508 10.89892 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030180 B = 0.003677 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.533736 B = 7613.495162 C = 8161.061920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.043 4.043 4 C 0.028 3.972 5 N -0.476 5.476 6 C 0.077 3.923 7 C -0.271 4.271 8 C 0.576 3.424 9 O -0.541 6.541 10 N -0.691 5.691 11 C 0.270 3.730 12 H 0.059 0.941 13 C -0.539 4.539 14 H 0.062 0.938 15 C 0.070 3.930 16 N -0.879 5.879 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.120 4.120 22 C -0.139 4.139 23 S 0.212 5.788 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.181 0.819 32 H 0.389 0.611 33 H 0.266 0.734 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.025 0.975 37 H 0.039 0.961 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.445 1.388 -1.992 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.083 4.083 4 C -0.247 4.247 5 N -0.190 5.190 6 C -0.080 4.080 7 C -0.396 4.396 8 C 0.359 3.641 9 O -0.421 6.421 10 N -0.339 5.339 11 C 0.168 3.832 12 H 0.077 0.923 13 C -0.578 4.578 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.515 5.515 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.159 4.159 22 C -0.197 4.197 23 S 0.470 5.530 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.198 0.802 32 H 0.222 0.778 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.554 1.370 -0.418 19.606 hybrid contribution 1.390 -0.208 -2.013 2.455 sum -18.164 1.163 -2.431 18.363 Atomic orbital electron populations 1.21761 0.94973 1.02063 1.02032 1.21553 0.96193 0.95080 1.03093 1.20323 0.84872 0.98829 1.04314 1.27426 1.01736 1.03310 0.92199 1.66077 1.04838 1.16345 1.31733 1.22167 0.91174 0.99198 0.95432 1.26220 1.00078 1.16009 0.97302 1.16728 0.82454 0.78237 0.86716 1.90818 1.84889 1.51301 1.15098 1.46340 1.07711 1.71231 1.08578 1.18891 0.74184 0.93315 0.96784 0.92307 1.21151 0.93753 1.43437 0.99432 0.91974 1.24880 0.98167 0.94777 0.95562 1.69979 1.15489 1.47998 1.18067 0.86514 0.80401 0.78617 0.81905 1.20368 1.21140 1.19859 1.21865 1.01142 0.97319 0.95592 1.21853 0.99422 0.98260 1.00126 1.83973 0.94964 1.64328 1.09759 0.92503 0.92432 0.92347 0.91130 0.91549 0.89593 0.88741 0.80212 0.77824 0.92467 0.90016 0.94557 0.95615 0.94172 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 3 C -0.04 -0.36 5.79 -27.88 -0.16 -0.52 16 4 C 0.03 0.34 6.64 -13.29 -0.09 0.26 16 5 N -0.48 -6.72 10.51 -11.50 -0.12 -6.84 16 6 C 0.08 1.14 10.93 -18.85 -0.21 0.93 16 7 C -0.27 -4.50 6.48 -37.09 -0.24 -4.74 16 8 C 0.58 11.71 6.35 -12.85 -0.08 11.63 16 9 O -0.54 -12.70 14.10 5.20 0.07 -12.63 16 10 N -0.69 -14.29 5.00 -56.24 -0.28 -14.57 16 11 C 0.27 6.68 2.11 -69.08 -0.15 6.54 16 12 H 0.06 1.70 7.52 -51.93 -0.39 1.31 16 13 C -0.54 -14.04 8.66 -34.44 -0.30 -14.34 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 16 N -0.88 -24.59 12.16 55.43 0.67 -23.92 16 17 Si 0.90 20.41 29.55 -169.99 -5.02 15.39 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.12 -2.85 5.50 -26.73 -0.15 -2.99 16 22 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 23 S 0.21 2.89 23.01 -107.50 -2.47 0.42 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.18 2.28 7.15 -52.49 -0.38 1.90 16 32 H 0.39 6.94 7.24 -40.82 -0.30 6.65 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.08 2.12 6.80 -51.92 -0.35 1.77 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.04 0.87 5.65 -51.92 -0.29 0.57 16 38 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -30.27 329.12 -8.59 -38.86 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.46 Total: 4.15 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.93 Total: -5.82 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.27 Total: -45.33 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.47 Total: 0.42 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.27 -8.59 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183968050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.749 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds