Wall clock time and date at job start Tue Mar 31 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 C 1.53001 * 109.47093 * 307.49459 * 3 2 1 5 5 C 1.53004 * 109.47060 * 187.49657 * 3 2 1 6 6 N 1.46503 * 109.47033 * 67.49960 * 3 2 1 7 7 C 1.46498 * 119.99493 * 243.31353 * 6 3 2 8 8 C 1.50702 * 109.46785 * 269.99668 * 7 6 3 9 9 H 1.07993 * 120.00823 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99663 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00249 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00195 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47046 * 89.99715 * 12 10 8 14 14 H 1.48492 * 109.47382 * 210.00175 * 12 10 8 15 15 H 1.48502 * 109.46662 * 329.99703 * 12 10 8 16 16 C 1.34771 * 120.00049 * 63.31524 * 6 3 2 17 17 O 1.21628 * 119.99984 * 179.04824 * 16 6 3 18 18 C 1.47270 * 120.00298 * 359.31714 * 16 6 3 19 19 C 1.35197 * 123.14684 * 187.14682 * 18 16 6 20 20 S 1.70942 * 108.83267 * 179.90294 * 19 18 16 21 21 C 1.70774 * 91.12550 * 0.30325 * 20 19 18 22 22 N 1.28647 * 110.55695 * 359.82252 * 21 20 19 23 23 H 1.08997 * 109.47412 * 300.00186 * 1 2 3 24 24 H 1.09003 * 109.46980 * 60.00470 * 1 2 3 25 25 H 1.09002 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47072 * 239.99872 * 2 1 3 27 27 H 1.09004 * 109.47189 * 120.00038 * 2 1 3 28 28 H 1.09002 * 109.46663 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47458 * 299.99825 * 4 3 2 30 30 H 1.08996 * 109.46727 * 60.00565 * 4 3 2 31 31 H 1.08993 * 109.47108 * 259.29581 * 5 3 2 32 32 H 1.09006 * 109.46931 * 19.29843 * 5 3 2 33 33 H 1.09002 * 109.47063 * 139.29139 * 5 3 2 34 34 H 1.08990 * 109.47630 * 29.99861 * 7 6 3 35 35 H 1.09004 * 109.46814 * 150.00638 * 7 6 3 36 36 H 0.97005 * 120.00157 * 180.02562 * 11 10 8 37 37 H 1.08009 * 125.58305 * 0.02562 * 19 18 16 38 38 H 1.08002 * 124.72075 * 179.81656 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.3821 2.2160 -1.1445 5 6 3.5584 1.4466 -0.1882 6 7 1.7044 2.0791 1.2761 7 6 0.7968 3.2287 1.3047 8 6 1.5931 4.5008 1.1679 9 1 2.6676 4.4574 1.0690 10 6 0.9497 5.7202 1.1689 11 7 -0.3589 5.7733 1.2888 12 14 1.9365 7.2972 0.9986 13 1 2.0667 7.6468 -0.4387 14 1 1.2406 8.3964 1.7144 15 1 3.2869 7.1017 1.5848 16 6 2.2306 1.6071 2.4236 17 8 1.9657 2.1463 3.4811 18 6 3.1311 0.4421 2.3963 19 6 3.5824 -0.1696 3.5143 20 16 4.5933 -1.4715 3.0612 21 6 4.3625 -1.1187 1.4063 22 7 3.5828 -0.1052 1.2649 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7451 3.2438 -1.1442 29 1 1.6319 1.7424 -2.0939 30 1 0.3004 2.2131 -1.0103 31 1 4.0436 1.5943 0.7765 32 1 3.8745 0.4933 -0.6118 33 1 3.8386 2.2550 -0.8636 34 1 0.0883 3.1530 0.4799 35 1 0.2541 3.2397 2.2501 36 1 -0.8116 6.6312 1.2892 37 1 3.3419 0.1161 4.5278 38 1 4.8091 -1.6697 0.5917 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187522341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:25 Heat of formation + Delta-G solvation = 73.460760 kcal Electronic energy + Delta-G solvation = -21572.229050 eV Core-core repulsion = 18544.667114 eV Total energy + Delta-G solvation = -3027.561936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.03191 -38.17490 -36.80952 -33.16707 -31.70309 -30.50714 -29.75094 -28.61851 -26.23492 -25.07231 -23.24753 -23.08284 -21.37172 -20.15720 -18.84435 -16.89314 -16.46272 -16.44169 -15.45165 -15.38711 -14.74683 -14.49168 -13.98709 -13.74084 -13.41392 -13.12130 -12.95040 -12.79946 -12.18301 -11.81823 -11.80295 -11.54789 -11.32580 -11.08253 -10.98382 -10.88925 -10.65540 -10.40582 -10.32356 -10.11565 -9.96420 -9.52335 -9.32820 -9.10691 -8.83257 -8.69144 -8.36956 -7.53964 -5.99224 -4.02485 0.69741 1.37409 1.72539 2.31340 3.32949 3.39554 3.44379 3.88753 4.01349 4.30271 4.49979 5.09377 5.29388 5.31505 5.35125 5.43389 5.52224 5.65543 5.77224 5.93456 6.08788 6.13455 6.27189 6.31685 6.41161 6.54099 6.59758 6.68575 6.70551 6.93248 7.08301 7.20017 7.47366 7.50051 7.67092 7.97986 8.29798 8.49408 8.93410 9.10575 9.61422 11.08631 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.006190 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.212757 B = 4522.347520 C = 4998.319137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C 0.179 3.821 4 C -0.151 4.151 5 C -0.109 4.109 6 N -0.567 5.567 7 C 0.242 3.758 8 C -0.517 4.517 9 H 0.057 0.943 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.575 3.425 17 O -0.537 6.537 18 C 0.008 3.992 19 C -0.221 4.221 20 S 0.164 5.836 21 C -0.037 4.037 22 N -0.392 5.392 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.185 0.815 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 -16.655 -2.497 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.093 3.907 4 C -0.208 4.208 5 C -0.168 4.168 6 N -0.297 5.297 7 C 0.123 3.877 8 C -0.556 4.556 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.359 3.641 17 O -0.415 6.415 18 C -0.125 4.125 19 C -0.362 4.362 20 S 0.418 5.582 21 C -0.336 4.336 22 N -0.108 5.108 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.202 0.798 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.439 -16.766 -1.970 18.873 hybrid contribution -0.003 1.684 -0.123 1.689 sum 8.436 -15.082 -2.094 17.407 Atomic orbital electron populations 1.21926 0.96807 1.00298 1.02427 1.22260 0.94666 0.96652 1.02231 1.20272 0.94854 0.91408 0.84124 1.22203 1.01371 1.01640 0.95601 1.22354 0.94664 0.99418 1.00323 1.48278 1.45601 1.31342 1.04438 1.19409 0.88489 0.81079 0.98715 1.21399 0.93805 0.90649 1.49788 0.92516 1.24905 0.94893 0.98941 0.95296 1.69931 1.07483 1.25600 1.50430 0.86547 0.80235 0.82990 0.77973 1.20671 1.21169 1.19982 1.16950 0.80475 0.81863 0.84851 1.90784 1.61299 1.59161 1.30296 1.21050 1.03176 1.01153 0.87130 1.26559 1.03519 1.00921 1.05215 1.82716 1.43756 1.27923 1.03800 1.28637 1.04617 0.99963 1.00373 1.68960 1.08636 1.06084 1.27075 0.92614 0.92438 0.93921 0.92010 0.90517 0.90229 0.92982 0.91726 0.92468 0.91846 0.95123 0.93895 0.94216 0.92820 0.79781 0.78420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.25 37.16 0.34 -2.10 16 2 C -0.12 -1.84 4.12 -26.73 -0.11 -1.95 16 3 C 0.18 3.23 0.74 -131.82 -0.10 3.13 16 4 C -0.15 -2.72 6.49 37.16 0.24 -2.48 16 5 C -0.11 -1.83 7.57 37.16 0.28 -1.55 16 6 N -0.57 -12.58 1.97 -161.49 -0.32 -12.89 16 7 C 0.24 6.37 4.53 -5.19 -0.02 6.34 16 8 C -0.52 -14.73 8.48 -34.44 -0.29 -15.02 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 12 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 16 C 0.58 12.88 6.92 -12.59 -0.09 12.79 16 17 O -0.54 -14.03 16.32 5.25 0.09 -13.94 16 18 C 0.01 0.13 4.66 -84.53 -0.39 -0.26 16 19 C -0.22 -3.15 10.62 29.65 0.31 -2.84 16 20 S 0.16 1.59 22.97 -107.50 -2.47 -0.88 16 21 C -0.04 -0.39 12.02 51.43 0.62 0.23 16 22 N -0.39 -5.62 1.45 -12.36 -0.02 -5.63 16 23 H 0.05 1.00 7.83 -51.93 -0.41 0.60 16 24 H 0.06 0.86 6.32 -51.93 -0.33 0.53 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.83 7.96 -51.92 -0.41 0.41 16 27 H 0.08 1.22 4.41 -54.03 -0.24 0.98 16 28 H 0.08 1.65 7.07 -51.93 -0.37 1.28 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.21 4.93 -51.93 -0.26 0.95 16 31 H 0.06 1.06 5.05 -51.93 -0.26 0.80 16 32 H 0.06 0.89 6.43 -51.93 -0.33 0.55 16 33 H 0.03 0.52 7.70 -51.93 -0.40 0.12 16 34 H 0.04 1.13 5.79 -51.93 -0.30 0.83 16 35 H 0.04 1.19 7.43 -51.93 -0.39 0.80 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.18 2.57 8.04 -52.48 -0.42 2.15 16 38 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -32.63 307.14 -6.60 -39.23 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.93 Total: 0.29 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 0.70 Total: -2.04 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.40 Total: -44.41 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.47 Total: -0.88 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.63 -6.60 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187522341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.693 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds