Wall clock time and date at job start Tue Mar 31 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29435 * 124.80223 * 90.02070 * 4 3 2 6 6 C 1.30940 * 117.36263 * 180.02562 * 5 4 3 7 7 C 1.50701 * 122.90491 * 179.97438 * 6 5 4 8 8 C 1.35671 * 114.19317 * 359.97438 * 6 5 4 9 9 C 1.46673 * 126.13103 * 179.97438 * 8 6 5 10 10 O 1.21695 * 120.00291 * 0.02562 * 9 8 6 11 11 N 1.34781 * 119.99959 * 180.02562 * 9 8 6 12 12 C 1.46502 * 120.00068 * 180.02562 * 11 9 8 13 13 H 1.09010 * 109.46932 * 325.00318 * 12 11 9 14 14 C 1.52996 * 109.47301 * 84.99544 * 12 11 9 15 15 C 1.50689 * 109.47360 * 205.00030 * 12 11 9 16 16 H 1.08005 * 120.00191 * 359.97438 * 15 12 11 17 17 C 1.37871 * 120.00553 * 180.02562 * 15 12 11 18 18 N 1.31521 * 119.99758 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00330 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47123 * 90.00077 * 19 17 15 21 21 H 1.48500 * 109.46991 * 209.99630 * 19 17 15 22 22 H 1.48494 * 109.47161 * 329.99512 * 19 17 15 23 23 S 1.70951 * 124.80795 * 269.72530 * 4 3 2 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.09001 * 109.46889 * 90.02288 * 7 6 5 32 32 H 1.08999 * 109.47101 * 210.02192 * 7 6 5 33 33 H 1.08994 * 109.47173 * 330.02539 * 7 6 5 34 34 H 0.96991 * 119.99651 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.47409 * 179.97438 * 14 12 11 36 36 H 1.09007 * 109.47513 * 300.00483 * 14 12 11 37 37 H 1.09008 * 109.47159 * 60.00173 * 14 12 11 38 38 H 0.97003 * 119.99975 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4432 -1.0638 6 6 5.5837 1.4427 -0.8948 7 6 6.5588 1.4427 -2.0438 8 6 5.9753 1.4421 0.4042 9 6 7.3592 1.4409 0.8902 10 8 8.2825 1.4408 0.0976 11 7 7.6082 1.4400 2.2149 12 6 8.9904 1.4394 2.7004 13 1 9.6121 0.8502 2.0260 14 6 9.5136 2.8762 2.7517 15 6 9.0375 0.8380 4.0813 16 1 8.1287 0.4912 4.5506 17 6 10.2406 0.7312 4.7461 18 7 11.3473 1.1539 4.1749 19 14 10.2989 -0.0136 6.4582 20 1 10.5105 -1.4797 6.3532 21 1 11.4162 0.5941 7.2246 22 1 9.0164 0.2527 7.1577 23 16 4.5234 1.4492 1.4026 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 6.7946 2.4704 -2.3202 32 1 7.4721 0.9281 -1.7452 33 1 6.1150 0.9297 -2.8969 34 1 6.8722 1.4404 2.8466 35 1 10.5418 2.8758 3.1134 36 1 9.4795 3.3112 1.7528 37 1 8.8919 3.4654 3.4260 38 1 12.1939 1.0785 4.6425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194746933.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:47 Heat of formation + Delta-G solvation = -18.289490 kcal Electronic energy + Delta-G solvation = -19505.668920 eV Core-core repulsion = 16474.128395 eV Total energy + Delta-G solvation = -3031.540525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13470 -38.58722 -35.52640 -34.84629 -32.47920 -31.67873 -29.50433 -28.28367 -27.43039 -25.28980 -23.44071 -22.25757 -21.52166 -20.07223 -19.25613 -17.73547 -17.11051 -15.72149 -15.43724 -15.22950 -15.15114 -14.79670 -14.08048 -13.98359 -13.61956 -13.35627 -13.18711 -12.51361 -12.45582 -12.36419 -12.22572 -11.83762 -11.76811 -11.47328 -11.20351 -11.10234 -11.04036 -11.01072 -10.79742 -10.34153 -10.26945 -9.77944 -9.37740 -9.19422 -9.10239 -8.64319 -8.58634 -7.99874 -6.15916 -4.25562 0.39261 1.26342 1.68989 2.61013 3.22912 3.29477 3.31358 3.71855 3.83980 4.04756 4.35221 4.62878 4.69980 4.77160 5.16573 5.18824 5.21262 5.24170 5.39913 5.46640 5.51195 5.73217 5.82313 5.85638 5.95452 5.98547 6.03141 6.53182 6.78087 6.91759 7.09279 7.34929 7.47443 7.62914 7.71614 7.85733 8.09538 8.53589 8.70458 8.96227 9.41654 10.90131 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.004102 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.127741 B = 6824.791781 C = 7785.699591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.043 4.043 4 C 0.050 3.950 5 N -0.475 5.475 6 C 0.133 3.867 7 C -0.086 4.086 8 C -0.278 4.278 9 C 0.580 3.420 10 O -0.534 6.534 11 N -0.700 5.700 12 C 0.265 3.735 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.536 4.536 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 S 0.155 5.845 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.386 0.614 35 H 0.092 0.908 36 H 0.016 0.984 37 H 0.027 0.973 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.623 0.343 -6.346 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.084 4.084 4 C -0.225 4.225 5 N -0.190 5.190 6 C -0.004 4.004 7 C -0.145 4.145 8 C -0.402 4.402 9 C 0.364 3.636 10 O -0.415 6.415 11 N -0.347 5.347 12 C 0.164 3.836 13 H 0.070 0.930 14 C -0.206 4.206 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 S 0.413 5.587 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.219 0.781 35 H 0.111 0.889 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.199 0.382 -6.224 19.238 hybrid contribution 0.267 -0.331 0.623 0.754 sum -17.932 0.051 -5.601 18.787 Atomic orbital electron populations 1.21757 0.94926 1.02083 1.02043 1.21546 0.96219 0.94992 1.03122 1.20354 0.84744 0.98931 1.04390 1.27272 1.01476 1.02326 0.91475 1.66035 1.04541 1.17064 1.31385 1.20622 0.89686 0.96273 0.93845 1.20625 0.97158 1.03515 0.93201 1.25883 0.98648 1.18711 0.96943 1.16753 0.85191 0.77962 0.83737 1.90739 1.44012 1.51702 1.55015 1.46516 1.11921 1.71660 1.04585 1.18825 0.75832 0.94249 0.94698 0.92994 1.22092 1.04056 0.97163 0.97332 1.21192 0.94247 1.41630 1.00371 0.92049 1.24880 0.95307 0.95079 0.98345 1.69902 0.98537 1.45651 1.37892 0.86426 0.77816 0.79299 0.83452 1.20494 1.21010 1.19795 1.83879 0.96861 1.66483 1.11519 0.92472 0.92442 0.92325 0.91486 0.91152 0.88688 0.89484 0.90422 0.87909 0.91250 0.78125 0.88915 0.96495 0.95401 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 3 C -0.04 -0.38 5.79 -27.89 -0.16 -0.54 16 4 C 0.05 0.64 6.64 -13.29 -0.09 0.55 16 5 N -0.48 -7.16 10.50 -7.70 -0.08 -7.24 16 6 C 0.13 2.20 6.79 -83.89 -0.57 1.63 16 7 C -0.09 -1.31 9.70 36.01 0.35 -0.96 16 8 C -0.28 -4.87 6.48 -37.10 -0.24 -5.11 16 9 C 0.58 12.26 7.74 -12.85 -0.10 12.16 16 10 O -0.53 -12.69 13.93 5.19 0.07 -12.62 16 11 N -0.70 -15.17 5.07 -56.25 -0.28 -15.46 16 12 C 0.27 6.79 2.56 -69.09 -0.18 6.61 16 13 H 0.05 1.51 7.58 -51.92 -0.39 1.12 16 14 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 15 C -0.54 -14.22 8.73 -34.45 -0.30 -14.53 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 18 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 19 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 S 0.16 2.09 22.31 -107.50 -2.40 -0.31 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.76 6.01 -51.93 -0.31 1.45 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.39 7.46 7.72 -40.82 -0.32 7.15 16 35 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 36 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -30.17 331.78 -8.44 -38.61 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.53 Total: 4.06 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.83 Total: -3.48 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.26 Total: -46.77 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.62 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.40 Total: -0.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.17 -8.44 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194746933.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.325 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds