Wall clock time and date at job start Tue Mar 31 2020 05:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29437 * 124.80384 * 2 1 4 4 C 1.30941 * 117.36250 * 180.02562 * 3 2 1 5 5 C 1.35665 * 114.19175 * 0.02562 * 4 3 2 6 6 C 1.46680 * 126.12715 * 180.02562 * 5 4 3 7 7 O 1.21684 * 120.00333 * 5.90211 * 6 5 4 8 8 N 1.34778 * 119.99866 * 185.90128 * 6 5 4 9 9 C 1.46501 * 120.00138 * 5.58404 * 8 6 5 10 10 C 1.50706 * 109.46662 * 274.50165 * 9 8 6 11 11 H 1.07990 * 120.00270 * 359.97438 * 10 9 8 12 12 C 1.37882 * 119.99608 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99867 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99851 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47009 * 89.99891 * 14 12 10 16 16 H 1.48499 * 109.47306 * 209.99903 * 14 12 10 17 17 H 1.48498 * 109.47332 * 330.00053 * 14 12 10 18 18 C 1.46501 * 119.99986 * 185.58559 * 8 6 5 19 19 C 1.53006 * 109.47149 * 264.02361 * 18 8 6 20 20 C 1.53007 * 109.46896 * 63.90754 * 19 18 8 21 21 C 1.52997 * 109.47361 * 183.90946 * 19 18 8 22 22 S 1.70951 * 124.80525 * 180.35881 * 2 1 3 23 23 H 1.09000 * 109.47383 * 89.97045 * 1 2 3 24 24 H 1.09003 * 109.47310 * 209.97557 * 1 2 3 25 25 H 1.09002 * 109.47167 * 329.97273 * 1 2 3 26 26 H 1.07993 * 122.90253 * 180.02562 * 4 3 2 27 27 H 1.08999 * 109.46713 * 34.49764 * 9 8 6 28 28 H 1.08994 * 109.47054 * 154.50215 * 9 8 6 29 29 H 0.97005 * 120.00020 * 179.97438 * 13 12 10 30 30 H 1.08992 * 109.47217 * 144.02799 * 18 8 6 31 31 H 1.08998 * 109.47767 * 24.02237 * 18 8 6 32 32 H 1.09004 * 109.47062 * 303.91325 * 19 18 8 33 33 H 1.08992 * 109.47164 * 182.21991 * 20 19 18 34 34 H 1.08996 * 109.46952 * 302.22539 * 20 19 18 35 35 H 1.09000 * 109.46712 * 62.21999 * 20 19 18 36 36 H 1.09000 * 109.47178 * 60.00075 * 21 19 18 37 37 H 1.08996 * 109.47033 * 180.02562 * 21 19 18 38 38 H 1.08997 * 109.46949 * 300.00127 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 3.9351 -0.4058 -0.0015 6 6 5.3188 -0.8925 -0.0018 7 8 6.2406 -0.1056 0.1073 8 7 5.5693 -2.2112 -0.1229 9 6 4.4697 -3.1455 -0.3767 10 6 3.8369 -3.5438 0.9318 11 1 4.2161 -3.1416 1.8595 12 6 2.7737 -4.4216 0.9443 13 7 2.3117 -4.9109 -0.1856 14 14 1.9898 -4.9159 2.5662 15 1 0.8922 -3.9707 2.8938 16 1 1.4411 -6.2911 2.4520 17 1 3.0126 -4.8788 3.6421 18 6 6.9412 -2.7105 -0.0006 19 6 7.5558 -2.8594 -1.3938 20 6 7.6582 -1.4837 -2.0557 21 6 8.9524 -3.4722 -1.2723 22 16 2.4827 -1.4036 -0.0088 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5143 26 1 4.2432 1.7163 -0.0002 27 1 3.7237 -2.6651 -1.0098 28 1 4.8554 -4.0327 -0.8787 29 1 1.5639 -5.5288 -0.1767 30 1 6.9320 -3.6797 0.4979 31 1 7.5333 -2.0067 0.5843 32 1 6.9256 -3.5089 -2.0014 33 1 8.0594 -1.5942 -3.0631 34 1 6.6683 -1.0304 -2.1065 35 1 8.3199 -0.8466 -1.4689 36 1 8.8795 -4.4522 -0.8008 37 1 9.3904 -3.5778 -2.2648 38 1 9.5825 -2.8226 -0.6648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227420784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:28 Heat of formation + Delta-G solvation = -6.957577 kcal Electronic energy + Delta-G solvation = -20758.704972 eV Core-core repulsion = 17727.655836 eV Total energy + Delta-G solvation = -3031.049136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48700 -38.50858 -35.88540 -34.40900 -32.57781 -31.49868 -28.35934 -27.74686 -26.81233 -25.62709 -23.53802 -23.09675 -20.82765 -19.45055 -17.92783 -17.58878 -16.84916 -15.81339 -15.69947 -14.84194 -14.63676 -14.28643 -14.10213 -14.03823 -13.15134 -13.02474 -12.70887 -12.59927 -12.36232 -12.20103 -12.00102 -11.91017 -11.77743 -11.50215 -11.17215 -11.03216 -10.88579 -10.59699 -10.46355 -10.34483 -10.19067 -9.97888 -9.29033 -9.02245 -8.48064 -8.43308 -8.07658 -7.72484 -6.48220 -4.50216 1.11149 2.28712 2.70062 3.07879 3.15594 3.18654 3.23949 3.82791 3.98657 4.12289 4.84506 4.86375 5.19565 5.27533 5.39035 5.52567 5.61570 5.80945 5.86112 5.87342 5.96418 5.99740 6.14483 6.17180 6.20700 6.24007 6.32708 6.36727 6.46691 6.65134 6.75955 6.87165 6.88272 7.33677 7.47915 7.66663 8.12731 8.47035 8.51810 8.88695 9.08431 10.54808 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.008710 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.427958 B = 3213.971067 C = 4820.277540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.076 4.076 3 N -0.504 5.504 4 C 0.093 3.907 5 C -0.326 4.326 6 C 0.595 3.405 7 O -0.560 6.560 8 N -0.594 5.594 9 C 0.224 3.776 10 C -0.531 4.531 11 H 0.070 0.930 12 C 0.077 3.923 13 N -0.870 5.870 14 Si 0.890 3.110 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.269 1.269 18 C 0.127 3.873 19 C -0.113 4.113 20 C -0.135 4.135 21 C -0.141 4.141 22 S 0.377 5.623 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.168 0.832 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.272 0.728 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.800 1.382 -1.813 2.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.345 4.345 3 N -0.220 5.220 4 C -0.069 4.069 5 C -0.452 4.452 6 C 0.384 3.616 7 O -0.442 6.442 8 N -0.324 5.324 9 C 0.102 3.898 10 C -0.575 4.575 11 H 0.088 0.912 12 C -0.131 4.131 13 N -0.505 5.505 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.193 1.193 18 C 0.004 3.996 19 C -0.133 4.133 20 C -0.192 4.192 21 C -0.199 4.199 22 S 0.644 5.356 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.185 0.815 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.474 1.094 -1.882 2.629 hybrid contribution 0.063 0.325 0.880 0.940 sum 1.536 1.419 -1.002 2.319 Atomic orbital electron populations 1.20255 0.87023 1.02999 1.02747 1.28619 1.02976 0.99095 1.03834 1.66214 1.04394 1.33319 1.18121 1.21774 0.91055 0.94983 0.99112 1.25908 0.99469 0.98575 1.21232 1.16810 0.86242 0.82300 0.76269 1.90706 1.45035 1.55536 1.52945 1.47978 1.08803 1.06385 1.69226 1.19666 0.83965 0.89013 0.97159 1.21570 1.15636 1.26921 0.93406 0.91152 1.24953 0.96297 0.94798 0.97033 1.69911 1.25139 1.29780 1.25719 0.86578 0.79992 0.78424 0.83442 1.19770 1.20536 1.19295 1.21399 0.82269 0.99884 0.96028 1.21516 0.96542 0.97547 0.97654 1.21739 1.02205 0.96340 0.98956 1.21745 0.96287 1.00497 1.01374 1.86873 0.91454 0.99858 1.57424 0.90570 0.90770 0.90842 0.81453 0.94119 0.93043 0.91781 0.90518 0.90532 0.91083 0.93949 0.92722 0.92566 0.92673 0.92907 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.46 36.00 0.38 -0.67 16 2 C -0.08 -1.45 7.39 -13.29 -0.10 -1.55 16 3 N -0.50 -10.19 10.51 -11.50 -0.12 -10.31 16 4 C 0.09 1.90 11.10 -18.85 -0.21 1.69 16 5 C -0.33 -6.94 6.21 -37.10 -0.23 -7.17 16 6 C 0.60 12.94 6.36 -12.85 -0.08 12.86 16 7 O -0.56 -12.73 15.06 5.20 0.08 -12.65 16 8 N -0.59 -12.22 2.23 -176.60 -0.39 -12.62 16 9 C 0.22 4.93 4.74 -5.19 -0.02 4.90 16 10 C -0.53 -12.36 6.69 -34.44 -0.23 -12.59 16 11 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.08 1.78 4.90 -17.82 -0.09 1.69 16 13 N -0.87 -20.82 13.29 55.43 0.74 -20.08 16 14 Si 0.89 18.56 29.54 -169.99 -5.02 13.54 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 C 0.13 2.26 4.94 -4.04 -0.02 2.24 16 19 C -0.11 -1.75 3.13 -90.62 -0.28 -2.03 16 20 C -0.14 -2.17 8.13 37.16 0.30 -1.87 16 21 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 22 S 0.38 7.71 15.82 -107.50 -1.70 6.01 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.17 3.16 8.06 -52.49 -0.42 2.74 16 27 H 0.04 0.94 4.90 -26.07 -0.13 0.81 16 28 H 0.05 1.17 8.04 -51.93 -0.42 0.75 16 29 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 30 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 31 H 0.08 1.39 7.33 -51.93 -0.38 1.01 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 1.01 6.25 -51.93 -0.32 0.69 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -25.99 323.08 -7.24 -33.23 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.44 Total: 1.93 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.24 Total: -3.92 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.22 Total: -43.01 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -1.70 Total: 6.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -25.99 -7.24 -33.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227420784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.273 kcal (2) G-P(sol) polarization free energy of solvation -25.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds