Wall clock time and date at job start Tue Mar 31 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46867 * 2 1 4 4 C 1.52995 * 109.47322 * 239.99308 * 2 1 3 5 5 C 1.53000 * 109.47286 * 300.00240 * 4 2 1 6 6 C 1.53003 * 109.46821 * 300.00147 * 5 4 2 7 7 C 1.52997 * 109.47597 * 60.00110 * 6 5 4 8 8 H 1.08996 * 109.47302 * 59.99376 * 7 6 5 9 9 C 1.50698 * 109.47477 * 180.02562 * 7 6 5 10 10 N 1.29947 * 126.28667 * 59.97015 * 9 7 6 11 11 O 1.21304 * 110.24662 * 179.72904 * 10 9 7 12 12 C 1.33643 * 109.81127 * 0.46663 * 11 10 9 13 13 C 1.50705 * 126.55151 * 179.79831 * 12 11 10 14 14 S 1.81004 * 109.47234 * 269.69524 * 13 12 11 15 15 C 1.76194 * 99.99738 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00441 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00388 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47228 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46793 * 299.99994 * 19 17 15 22 22 H 1.48500 * 109.47000 * 60.00087 * 19 17 15 23 23 N 1.31126 * 106.89947 * 359.54637 * 12 11 10 24 24 C 1.53003 * 109.46856 * 119.99117 * 2 1 3 25 25 H 1.08997 * 109.47809 * 300.00782 * 1 2 3 26 26 H 1.09002 * 109.46982 * 60.00891 * 1 2 3 27 27 H 1.09007 * 109.46834 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47255 * 59.99968 * 4 2 1 29 29 H 1.08998 * 109.47320 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.47167 * 59.99629 * 5 4 2 31 31 H 1.08997 * 109.47116 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.47421 * 299.99492 * 6 5 4 33 33 H 1.09007 * 109.46954 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47145 * 149.69278 * 13 12 11 35 35 H 1.09001 * 109.46839 * 29.69004 * 13 12 11 36 36 H 0.97005 * 119.99723 * 0.02562 * 18 17 15 37 37 H 1.08997 * 109.46993 * 300.00600 * 24 2 1 38 38 H 1.08996 * 109.47304 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0400 -2.8849 0.0004 7 6 1.5299 -2.1637 1.2496 8 1 0.4400 -2.1636 1.2495 9 6 2.0327 -2.8735 2.4801 10 7 3.2768 -3.0614 2.8053 11 8 3.3498 -3.6617 3.8568 12 6 2.1220 -3.9305 4.3111 13 6 1.7756 -4.6638 5.5813 14 16 1.6369 -6.4353 5.2366 15 6 1.2382 -7.0299 6.8466 16 1 1.1510 -6.3383 7.6715 17 6 1.0350 -8.3871 7.0546 18 7 1.1397 -9.2300 6.0489 19 14 0.6116 -9.0175 8.7613 20 1 0.4454 -10.4924 8.7171 21 1 1.7061 -8.6701 9.7028 22 1 -0.6540 -8.3908 9.2205 23 7 1.2763 -3.4296 3.4432 24 6 2.0400 -0.7211 1.2494 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.6767 -0.2077 -2.1392 29 1 3.1300 -0.7210 -1.2493 30 1 0.4401 -2.1639 -1.2490 31 1 1.8938 -2.6779 -2.1387 32 1 3.1301 -2.8850 0.0005 33 1 1.6770 -3.9128 0.0003 34 1 0.8260 -4.2933 5.9673 35 1 2.5583 -4.4980 6.3215 36 1 1.3592 -8.9026 5.1626 37 1 1.6765 -0.2072 2.1392 38 1 3.1299 -0.7215 1.2492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230997611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:23 Heat of formation + Delta-G solvation = 28.028073 kcal Electronic energy + Delta-G solvation = -19555.737512 eV Core-core repulsion = 16526.205467 eV Total energy + Delta-G solvation = -3029.532045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.29463 -39.48709 -35.66517 -33.65329 -32.67941 -32.00414 -30.85395 -28.50826 -27.03832 -25.02017 -24.45214 -23.03109 -22.52807 -20.81866 -18.74671 -18.43369 -17.83617 -17.25936 -16.04898 -15.15834 -14.81716 -14.72568 -14.32235 -14.10036 -13.90852 -13.56570 -13.32674 -13.09725 -12.65982 -12.61447 -12.29763 -12.19618 -11.97503 -11.83239 -11.37181 -11.27181 -11.21907 -10.98810 -10.78420 -10.62600 -10.44313 -10.30436 -10.23581 -10.02779 -9.29078 -9.14192 -8.53240 -6.91912 -6.76061 -4.18842 1.30540 2.34611 2.98681 3.23189 3.31506 3.32737 3.52311 3.69773 4.11111 4.20376 4.46152 4.49369 4.60141 4.88971 4.95746 5.03923 5.09351 5.10477 5.11695 5.20465 5.26936 5.37911 5.43353 5.52555 5.59160 5.65488 5.73775 5.78917 5.84453 5.91147 5.94738 5.96939 6.00535 6.10127 6.12564 6.22674 6.32489 7.79673 8.34978 8.42793 9.10878 10.67370 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040775 B = 0.003161 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.527541 B = 8855.101182 C = 8954.351716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.112 4.112 7 C 0.007 3.993 8 H 0.102 0.898 9 C 0.172 3.828 10 N -0.389 5.389 11 O 0.075 5.925 12 C 0.220 3.780 13 C -0.019 4.019 14 S -0.138 6.138 15 C -0.597 4.597 16 H 0.074 0.926 17 C 0.038 3.962 18 N -0.880 5.880 19 Si 1.086 2.914 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.479 5.479 24 C -0.106 4.106 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.276 0.724 37 H 0.064 0.936 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 17.037 -11.087 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.013 4.013 8 H 0.120 0.880 9 C -0.101 4.101 10 N -0.098 5.098 11 O 0.018 5.982 12 C 0.000 4.000 13 C -0.168 4.168 14 S 0.087 5.913 15 C -0.745 4.745 16 H 0.092 0.908 17 C -0.173 4.173 18 N -0.514 5.514 19 Si 0.911 3.089 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.214 5.214 24 C -0.144 4.144 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.753 15.471 -11.856 19.506 hybrid contribution 0.193 1.908 0.637 2.021 sum 0.946 17.379 -11.219 20.708 Atomic orbital electron populations 1.21977 0.95100 1.02416 1.01641 1.21081 0.96125 0.99080 0.94436 0.90922 1.21593 1.00742 0.95624 0.97379 1.21558 1.01254 0.95480 0.97297 1.21588 1.01505 0.99162 0.92818 1.19586 1.01418 0.93375 0.86927 0.87974 1.25764 0.85600 0.99983 0.98754 1.74524 1.21410 1.14634 0.99230 1.85296 1.32607 1.53186 1.27082 1.28174 0.79530 0.94644 0.97679 1.21721 1.05749 1.00073 0.89282 1.84662 1.92804 0.94549 1.19267 1.23554 1.60368 0.98174 0.92406 0.90829 1.26139 0.93386 0.91785 1.06014 1.70839 1.41641 1.37162 1.01734 0.83294 0.76708 0.76534 0.72338 1.20208 1.20901 1.20919 1.71940 1.31423 1.15001 1.03029 1.21612 1.01246 0.93385 0.98160 0.92639 0.92680 0.91841 0.91838 0.91851 0.91299 0.91584 0.91196 0.91446 0.86915 0.87719 0.91139 0.91676 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.50 37.16 0.32 -0.90 16 2 C -0.09 -0.74 3.19 -90.62 -0.29 -1.03 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -0.91 5.45 -26.73 -0.15 -1.06 16 5 C -0.12 -1.03 5.65 -26.73 -0.15 -1.18 16 6 C -0.11 -1.28 5.19 -26.73 -0.14 -1.42 16 7 C 0.01 0.09 2.39 -91.77 -0.22 -0.13 16 8 H 0.10 1.25 6.43 -51.93 -0.33 0.92 16 9 C 0.17 2.85 6.72 -156.37 -1.05 1.80 16 10 N -0.39 -6.83 12.16 30.90 0.38 -6.45 16 11 O 0.08 1.40 11.31 18.10 0.20 1.60 16 12 C 0.22 4.16 7.77 -13.05 -0.10 4.06 16 13 C -0.02 -0.37 6.30 36.01 0.23 -0.14 16 14 S -0.14 -3.46 20.45 -107.50 -2.20 -5.65 16 15 C -0.60 -16.31 9.50 30.94 0.29 -16.02 16 16 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 17 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 18 N -0.88 -26.29 13.67 55.49 0.76 -25.53 16 19 Si 1.09 23.92 29.92 -169.99 -5.09 18.83 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 N -0.48 -8.98 11.55 -9.87 -0.11 -9.10 16 24 C -0.11 -1.12 4.71 -26.73 -0.13 -1.25 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 2.10 8.14 -51.92 -0.42 1.68 16 35 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 36 H 0.28 8.37 7.12 -40.82 -0.29 8.08 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -30.40 321.52 -8.18 -38.58 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.49 Total: -0.80 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -1.48 Total: -16.32 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 1.02 Total: -41.08 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.09 Total: 18.83 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.20 Total: -5.65 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.40 -8.18 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230997611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.606 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds