Wall clock time and date at job start Tue Mar 31 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46867 * 2 1 4 4 C 1.52995 * 109.47322 * 239.99308 * 2 1 3 5 5 C 1.53000 * 109.47286 * 300.00240 * 4 2 1 6 6 C 1.53003 * 109.46821 * 300.00147 * 5 4 2 7 7 C 1.52997 * 109.47597 * 60.00110 * 6 5 4 8 8 H 1.08996 * 109.47302 * 59.99376 * 7 6 5 9 9 C 1.50698 * 109.47477 * 180.02562 * 7 6 5 10 10 N 1.29947 * 126.28667 * 59.97015 * 9 7 6 11 11 O 1.21304 * 110.24662 * 179.72904 * 10 9 7 12 12 C 1.33643 * 109.81127 * 0.46663 * 11 10 9 13 13 C 1.50705 * 126.55151 * 179.79831 * 12 11 10 14 14 S 1.81004 * 109.47234 * 269.69524 * 13 12 11 15 15 C 1.76194 * 99.99738 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00441 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00388 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47228 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46793 * 299.99994 * 19 17 15 22 22 H 1.48500 * 109.47000 * 60.00087 * 19 17 15 23 23 N 1.31126 * 106.89947 * 359.54637 * 12 11 10 24 24 C 1.53003 * 109.46856 * 119.99117 * 2 1 3 25 25 H 1.08997 * 109.47809 * 300.00782 * 1 2 3 26 26 H 1.09002 * 109.46982 * 60.00891 * 1 2 3 27 27 H 1.09007 * 109.46834 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47255 * 59.99968 * 4 2 1 29 29 H 1.08998 * 109.47320 * 179.97438 * 4 2 1 30 30 H 1.08998 * 109.47167 * 59.99629 * 5 4 2 31 31 H 1.08997 * 109.47116 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.47421 * 299.99492 * 6 5 4 33 33 H 1.09007 * 109.46954 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47145 * 149.69278 * 13 12 11 35 35 H 1.09001 * 109.46839 * 29.69004 * 13 12 11 36 36 H 0.97005 * 119.99723 * 0.02562 * 18 17 15 37 37 H 1.08997 * 109.46993 * 300.00600 * 24 2 1 38 38 H 1.08996 * 109.47304 * 179.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0400 -2.8849 0.0004 7 6 1.5299 -2.1637 1.2496 8 1 0.4400 -2.1636 1.2495 9 6 2.0327 -2.8735 2.4801 10 7 3.2768 -3.0614 2.8053 11 8 3.3498 -3.6617 3.8568 12 6 2.1220 -3.9305 4.3111 13 6 1.7756 -4.6638 5.5813 14 16 1.6369 -6.4353 5.2366 15 6 1.2382 -7.0299 6.8466 16 1 1.1510 -6.3383 7.6715 17 6 1.0350 -8.3871 7.0546 18 7 1.1397 -9.2300 6.0489 19 14 0.6116 -9.0175 8.7613 20 1 0.4454 -10.4924 8.7171 21 1 1.7061 -8.6701 9.7028 22 1 -0.6540 -8.3908 9.2205 23 7 1.2763 -3.4296 3.4432 24 6 2.0400 -0.7211 1.2494 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.6767 -0.2077 -2.1392 29 1 3.1300 -0.7210 -1.2493 30 1 0.4401 -2.1639 -1.2490 31 1 1.8938 -2.6779 -2.1387 32 1 3.1301 -2.8850 0.0005 33 1 1.6770 -3.9128 0.0003 34 1 0.8260 -4.2933 5.9673 35 1 2.5583 -4.4980 6.3215 36 1 1.3592 -8.9026 5.1626 37 1 1.6765 -0.2072 2.1392 38 1 3.1299 -0.7215 1.2492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230997611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:22 Heat of formation + Delta-G solvation = 10.038150 kcal Electronic energy + Delta-G solvation = -19556.517613 eV Core-core repulsion = 16526.205467 eV Total energy + Delta-G solvation = -3030.312146 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.72864 -40.32068 -37.03678 -35.02251 -34.75392 -32.86056 -31.84557 -30.03791 -27.72017 -27.13667 -25.61483 -24.39761 -23.31006 -22.02499 -20.46792 -19.51608 -19.28015 -18.65859 -17.07944 -16.87974 -16.03336 -15.71676 -15.64647 -15.51316 -14.94203 -14.86316 -14.60797 -14.36520 -14.22329 -13.93401 -13.52694 -13.38680 -13.03271 -12.73866 -12.67515 -12.54767 -12.29710 -12.05194 -12.01457 -11.95361 -11.85025 -11.37673 -11.16972 -11.11485 -11.07023 -10.77864 -10.50122 -8.98279 -8.95293 -6.34435 -0.22722 0.88146 1.42283 1.55262 1.62705 1.64890 1.83152 2.27639 2.43676 2.88605 3.00337 3.06836 3.56209 3.66777 3.69077 3.94621 4.02169 4.16287 4.18997 4.30578 4.34668 4.37644 4.38829 4.53359 4.62121 4.72509 4.75584 4.92575 4.94899 5.00359 5.05856 5.10754 5.18681 5.29595 5.36076 5.38358 5.57935 5.64746 6.12276 6.98142 7.00519 8.48336 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040775 B = 0.003161 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.527541 B = 8855.101182 C = 8954.351716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.110 4.110 7 C 0.005 3.995 8 H 0.106 0.894 9 C 0.177 3.823 10 N -0.395 5.395 11 O 0.067 5.933 12 C 0.214 3.786 13 C 0.003 3.997 14 S -0.195 6.195 15 C -0.605 4.605 16 H 0.084 0.916 17 C -0.014 4.014 18 N -0.911 5.911 19 Si 1.135 2.865 20 H -0.282 1.282 21 H -0.262 1.262 22 H -0.263 1.263 23 N -0.493 5.493 24 C -0.100 4.100 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 18.818 -11.144 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 H 0.105 0.895 4 C -0.151 4.151 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.015 4.015 8 H 0.124 0.876 9 C -0.096 4.096 10 N -0.106 5.106 11 O 0.013 5.987 12 C -0.006 4.006 13 C -0.146 4.146 14 S 0.030 5.970 15 C -0.752 4.752 16 H 0.102 0.898 17 C -0.218 4.218 18 N -0.546 5.546 19 Si 0.953 3.047 20 H -0.207 1.207 21 H -0.186 1.186 22 H -0.188 1.188 23 N -0.228 5.228 24 C -0.139 4.139 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.327 17.278 -11.919 20.993 hybrid contribution 0.352 1.461 0.574 1.608 sum 0.680 18.739 -11.345 21.916 Atomic orbital electron populations 1.21976 0.94638 1.02162 1.02335 1.21081 0.96435 0.99455 0.93240 0.89522 1.21597 1.00698 0.94913 0.97880 1.21552 1.01648 0.95929 0.95960 1.21576 1.00879 0.98623 0.93744 1.19860 1.01645 0.94341 0.85617 0.87562 1.26506 0.85055 0.98930 0.99149 1.74523 1.21956 1.15100 0.99041 1.85286 1.32466 1.53494 1.27477 1.28013 0.79882 0.95077 0.97674 1.21570 1.07227 0.95706 0.90104 1.84758 1.92966 0.99725 1.19509 1.23925 1.59370 0.98669 0.93239 0.89815 1.27789 0.92509 0.92496 1.08963 1.70951 1.44112 1.37809 1.01746 0.82719 0.77945 0.75803 0.68237 1.20695 1.18641 1.18810 1.71957 1.32000 1.15329 1.03547 1.21593 1.00693 0.92101 0.99497 0.92871 0.91131 0.92541 0.89865 0.91997 0.90613 0.90537 0.92130 0.93039 0.85761 0.85586 0.92784 0.92131 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.50 71.98 0.61 -1.45 16 2 C -0.08 -1.19 3.19 -10.79 -0.03 -1.22 16 3 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 4 C -0.11 -1.48 5.45 30.59 0.17 -1.31 16 5 C -0.11 -1.75 5.65 30.60 0.17 -1.58 16 6 C -0.11 -2.43 5.19 30.59 0.16 -2.28 16 7 C 0.01 0.13 2.39 -11.54 -0.03 0.10 16 8 H 0.11 2.52 6.43 -2.39 -0.02 2.50 16 9 C 0.18 5.82 6.72 138.46 0.93 6.75 16 10 N -0.40 -13.87 12.16 -60.32 -0.73 -14.60 16 11 O 0.07 2.49 11.31 74.83 0.85 3.34 16 12 C 0.21 8.04 7.77 88.38 0.69 8.72 16 13 C 0.00 0.13 6.30 71.24 0.45 0.57 16 14 S -0.20 -9.90 20.45 -56.49 -1.16 -11.06 16 15 C -0.60 -32.87 9.50 67.95 0.65 -32.23 16 16 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 17 C -0.01 -0.77 5.49 84.86 0.47 -0.30 16 18 N -0.91 -55.35 13.67 21.65 0.30 -55.06 16 19 Si 1.14 47.18 29.92 68.60 2.05 49.23 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 N -0.49 -18.36 11.55 -303.20 -3.50 -21.87 16 24 C -0.10 -2.01 4.71 30.60 0.14 -1.86 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.83 4.81 -2.38 -0.01 0.82 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.09 6.43 -2.39 -0.02 1.07 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.05 1.28 8.14 -2.38 -0.02 1.27 16 34 H 0.12 4.49 8.14 -2.40 -0.02 4.47 16 35 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 36 H 0.26 16.33 7.12 -92.70 -0.66 15.67 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -65.67 321.52 3.34 -62.34 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.16 Total: 13.76 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.37 Total: -26.08 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -3.94 Total: -91.52 kcal Atomic # 8 Polarization: 2.49 SS G_CDS: 0.85 Total: 3.34 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.05 Total: 49.23 kcal Atomic # 16 Polarization: -9.90 SS G_CDS: -1.16 Total: -11.06 kcal Total: -65.67 3.34 -62.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230997611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.377 kcal (2) G-P(sol) polarization free energy of solvation -65.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds