Wall clock time and date at job start Tue Mar 31 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 10 10 N 1.29939 * 126.29195 * 299.68856 * 9 7 6 11 11 O 1.21294 * 110.25480 * 179.84119 * 10 9 7 12 12 C 1.33641 * 109.80941 * 0.42501 * 11 10 9 13 13 C 1.50703 * 126.54742 * 179.75484 * 12 11 10 14 14 S 1.80991 * 109.47436 * 269.97535 * 13 12 11 15 15 C 1.76199 * 100.00389 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99888 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00278 * 180.02562 * 15 14 13 18 18 N 1.31636 * 119.99788 * 179.97438 * 17 15 14 19 19 Si 1.86790 * 119.99939 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47560 * 90.00074 * 19 17 15 21 21 H 1.48510 * 109.47034 * 209.99967 * 19 17 15 22 22 H 1.48503 * 109.47233 * 329.99907 * 19 17 15 23 23 N 1.31122 * 106.89982 * 359.73613 * 12 11 10 24 24 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 25 25 H 1.08996 * 109.47261 * 300.00539 * 1 2 3 26 26 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 27 27 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 29 29 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 30 30 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 31 31 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 34 34 H 1.09002 * 109.47435 * 29.97771 * 13 12 11 35 35 H 1.09009 * 109.46680 * 149.97492 * 13 12 11 36 36 H 0.96995 * 119.99348 * 180.02562 * 18 17 15 37 37 H 1.08992 * 109.47554 * 59.99639 * 24 7 6 38 38 H 1.09004 * 109.47108 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9331 0.3055 1.2498 9 6 4.0708 -1.4332 2.4801 10 7 3.8278 -2.6668 2.8081 11 8 4.3778 -2.9391 3.8544 12 6 5.0365 -1.8700 4.3115 13 6 5.8431 -1.7884 5.5819 14 16 4.7732 -1.2614 6.9432 15 6 5.9403 -1.2506 8.2632 16 1 6.9686 -1.5232 8.0771 17 6 5.5379 -0.8928 9.5425 18 7 6.4098 -0.8852 10.5287 19 14 3.7593 -0.4220 9.8646 20 1 2.9841 -1.6352 10.2288 21 1 3.7005 0.5564 10.9804 22 1 3.1790 0.1873 8.6410 23 7 4.8472 -0.9057 3.4434 24 6 2.0395 -0.7216 1.2493 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6765 -1.7490 -1.2492 29 1 1.6766 -0.2075 -2.1392 30 1 3.9336 0.3056 -1.2488 31 1 3.9332 -1.2354 -2.1391 32 1 5.1695 -1.4434 0.0008 33 1 3.7158 -2.4709 0.0002 34 1 6.2639 -2.7681 5.8087 35 1 6.6504 -1.0671 5.4539 36 1 6.1285 -0.6355 11.4227 37 1 1.6757 -1.7490 1.2491 38 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230997618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:27 Heat of formation + Delta-G solvation = 29.534780 kcal Electronic energy + Delta-G solvation = -19451.481293 eV Core-core repulsion = 16422.014584 eV Total energy + Delta-G solvation = -3029.466709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.31831 -39.20370 -35.68868 -33.75718 -32.57586 -32.51199 -30.85458 -28.51623 -26.66491 -25.76910 -24.47762 -23.08029 -22.07907 -20.66971 -19.77136 -17.99738 -17.81779 -17.01664 -15.66598 -15.17060 -14.92620 -14.62964 -14.55427 -14.44567 -14.15002 -13.76645 -13.32333 -12.93927 -12.68833 -12.60826 -12.16245 -12.10993 -12.01532 -11.62306 -11.38745 -11.30482 -11.17884 -11.12215 -10.94360 -10.81204 -10.66919 -10.50726 -10.32450 -10.02905 -9.51703 -9.13645 -8.78250 -7.15585 -6.40792 -4.17471 1.27445 2.29861 2.89122 3.08653 3.22797 3.36885 3.44114 3.67031 4.17247 4.20436 4.43638 4.47168 4.56844 4.63078 4.86817 4.88597 4.98399 5.11967 5.17364 5.19321 5.24452 5.37734 5.41121 5.48055 5.56094 5.61283 5.71753 5.77263 5.84274 5.90394 5.94541 5.95463 6.00976 6.04958 6.10357 6.20950 6.29007 7.82202 8.31325 8.41001 9.03207 10.68112 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029858 B = 0.003534 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.540627 B = 7921.920403 C = 8518.834709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.111 4.111 7 C 0.008 3.992 8 H 0.100 0.900 9 C 0.172 3.828 10 N -0.388 5.388 11 O 0.077 5.923 12 C 0.219 3.781 13 C -0.012 4.012 14 S -0.165 6.165 15 C -0.512 4.512 16 H 0.096 0.904 17 C 0.098 3.902 18 N -0.874 5.874 19 Si 0.856 3.144 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.238 1.238 23 N -0.478 5.478 24 C -0.107 4.107 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.273 0.727 37 H 0.070 0.930 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 0.365 -21.664 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.149 4.149 7 C -0.012 4.012 8 H 0.118 0.882 9 C -0.101 4.101 10 N -0.097 5.097 11 O 0.019 5.981 12 C -0.002 4.002 13 C -0.160 4.160 14 S 0.061 5.939 15 C -0.660 4.660 16 H 0.114 0.886 17 C -0.111 4.111 18 N -0.509 5.509 19 Si 0.681 3.319 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.162 1.162 23 N -0.213 5.213 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.076 0.510 -22.099 23.895 hybrid contribution 0.751 -0.121 0.758 1.074 sum -8.325 0.389 -21.341 22.910 Atomic orbital electron populations 1.21819 0.94979 1.01929 1.01741 1.21118 0.95661 0.99693 0.94364 0.90860 1.21632 0.95383 1.00879 0.97430 1.21516 0.95751 1.00906 0.97254 1.21581 1.00652 0.99774 0.92909 1.19539 0.95875 0.98937 0.86843 0.88208 1.25739 0.96869 0.88894 0.98629 1.74520 1.17695 1.17928 0.99572 1.85298 1.47610 1.37715 1.27451 1.28188 0.93676 0.81257 0.97060 1.21688 0.98775 1.07215 0.88353 1.84643 1.17681 1.89052 1.02564 1.22085 0.96909 1.54319 0.92645 0.88617 1.24695 0.98093 0.93540 0.94806 1.69920 1.34442 1.45521 1.01052 0.86758 0.84717 0.79943 0.80507 1.19062 1.19638 1.16188 1.71946 1.17869 1.28478 1.02974 1.21653 0.92809 1.01779 0.98274 0.92531 0.92623 0.92645 0.91822 0.91851 0.91621 0.91576 0.91652 0.91189 0.87264 0.86445 0.91669 0.91130 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.09 -0.76 2.72 -90.62 -0.25 -1.01 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.87 5.20 -26.73 -0.14 -1.01 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 6 C -0.11 -1.12 5.19 -26.73 -0.14 -1.26 16 7 C 0.01 0.10 2.66 -91.77 -0.24 -0.15 16 8 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 9 C 0.17 2.74 6.72 -156.37 -1.05 1.68 16 10 N -0.39 -6.55 12.16 30.89 0.38 -6.18 16 11 O 0.08 1.36 11.31 18.11 0.20 1.56 16 12 C 0.22 3.94 7.77 -13.06 -0.10 3.83 16 13 C -0.01 -0.22 6.30 36.01 0.23 0.01 16 14 S -0.16 -3.85 19.39 -107.50 -2.08 -5.94 16 15 C -0.51 -13.95 10.04 30.94 0.31 -13.64 16 16 H 0.10 2.72 8.03 -52.48 -0.42 2.29 16 17 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 18 N -0.87 -25.37 13.97 55.49 0.78 -24.60 16 19 Si 0.86 20.68 27.74 -169.99 -4.71 15.96 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.24 -5.68 6.74 56.52 0.38 -5.30 16 23 N -0.48 -8.59 11.55 -9.88 -0.11 -8.71 16 24 C -0.11 -1.17 4.46 -26.73 -0.12 -1.29 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 1.83 8.14 -51.91 -0.42 1.41 16 35 H 0.12 2.09 8.14 -51.91 -0.42 1.67 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -29.40 327.22 -7.96 -37.36 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.92 Total: -2.35 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.42 Total: -12.04 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 1.04 Total: -39.48 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.20 Total: 1.56 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.96 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.08 Total: -5.94 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.40 -7.96 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230997618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.895 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds