Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47458 * 2 1 4 4 C 1.52994 * 109.47411 * 120.00690 * 2 1 3 5 5 C 1.53011 * 109.47176 * 59.99671 * 4 2 1 6 6 C 1.52996 * 109.47028 * 60.00158 * 5 4 2 7 7 C 1.53004 * 109.47288 * 300.00243 * 6 5 4 8 8 H 1.09004 * 109.46668 * 299.99892 * 7 6 5 9 9 C 1.50698 * 109.47233 * 180.02562 * 7 6 5 10 10 N 1.29947 * 126.28632 * 300.02210 * 9 7 6 11 11 O 1.21301 * 110.25015 * 179.97438 * 10 9 7 12 12 C 1.33644 * 109.81228 * 0.02562 * 11 10 9 13 13 C 1.50695 * 126.54986 * 179.97438 * 12 11 10 14 14 S 1.81000 * 109.47338 * 270.02326 * 13 12 11 15 15 C 1.76199 * 100.00265 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99604 * 359.97438 * 15 14 13 17 17 C 1.38796 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31633 * 120.00140 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00142 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99698 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99879 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 N 1.31133 * 106.89411 * 0.22639 * 12 11 10 24 24 C 1.52998 * 109.47211 * 59.99907 * 7 6 5 25 25 H 1.09002 * 109.46649 * 299.99203 * 1 2 3 26 26 H 1.08998 * 109.47002 * 59.99673 * 1 2 3 27 27 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47301 * 299.99708 * 4 2 1 29 29 H 1.09002 * 109.47913 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46577 * 300.00147 * 5 4 2 31 31 H 1.08997 * 109.46701 * 180.02562 * 5 4 2 32 32 H 1.09000 * 109.47201 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.47178 * 59.99823 * 6 5 4 34 34 H 1.09004 * 109.47077 * 150.02874 * 13 12 11 35 35 H 1.08997 * 109.47267 * 30.02628 * 13 12 11 36 36 H 0.97001 * 119.99591 * 359.97438 * 18 17 15 37 37 H 1.09006 * 109.47355 * 59.99839 * 24 7 6 38 38 H 1.08996 * 109.47516 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5300 -2.1640 1.2490 6 6 2.0399 -2.8851 -0.0003 7 6 1.5300 -2.1637 -1.2495 8 1 0.4399 -2.1637 -1.2494 9 6 2.0317 -2.8743 -2.4800 10 7 3.2755 -3.0632 -2.8057 11 8 3.3477 -3.6690 -3.8541 12 6 2.1195 -3.9316 -4.3110 13 6 1.7722 -4.6645 -5.5811 14 16 1.6351 -3.4801 -6.9429 15 6 1.2334 -4.5763 -8.2626 16 1 1.1451 -5.6364 -8.0760 17 6 1.0316 -4.0775 -9.5420 18 7 1.1407 -2.7856 -9.7697 19 14 0.6050 -5.2396 -10.9410 20 1 -0.6624 -5.9473 -10.6277 21 1 1.6969 -6.2317 -11.1108 22 1 0.4409 -4.4637 -12.1965 23 7 1.2745 -3.4250 -3.4455 24 6 2.0400 -0.7212 -1.2494 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6768 -0.2076 2.1392 29 1 3.1301 -0.7218 1.2489 30 1 0.4400 -2.1638 1.2490 31 1 1.8931 -2.6777 2.1391 32 1 1.6762 -3.9126 -0.0006 33 1 3.1300 -2.8851 -0.0004 34 1 0.8218 -5.1827 -5.4533 35 1 2.5538 -5.3896 -5.8075 36 1 1.3618 -2.1822 -9.0431 37 1 3.1300 -0.7212 -1.2494 38 1 1.6763 -0.2071 -2.1390 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230997620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = 28.039736 kcal Electronic energy + Delta-G solvation = -19568.042403 eV Core-core repulsion = 16538.510864 eV Total energy + Delta-G solvation = -3029.531539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.29480 -39.48043 -35.66395 -33.65128 -32.67933 -32.00992 -30.84680 -28.50845 -27.01338 -25.01996 -24.44951 -23.03083 -22.53865 -20.81517 -18.73798 -18.43302 -17.83494 -17.25993 -16.04325 -15.14963 -14.80823 -14.75044 -14.31244 -14.07779 -13.90718 -13.56721 -13.32691 -13.08908 -12.66529 -12.61118 -12.30533 -12.16369 -11.98276 -11.83305 -11.38351 -11.25507 -11.20052 -10.98774 -10.78386 -10.62075 -10.43613 -10.30634 -10.23550 -10.02694 -9.28930 -9.14163 -8.53197 -6.91872 -6.76045 -4.18821 1.30487 2.34500 2.99230 3.22916 3.31513 3.32730 3.52313 3.69774 4.11131 4.20543 4.46307 4.50113 4.61684 4.89365 4.95557 5.03802 5.09473 5.10344 5.12031 5.20943 5.27186 5.37224 5.46238 5.52354 5.60655 5.67387 5.73147 5.80092 5.84673 5.91442 5.93650 5.97113 6.01571 6.12225 6.12816 6.22656 6.32865 7.79665 8.35005 8.42819 9.10916 10.67396 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038278 B = 0.003243 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.318618 B = 8631.024652 C = 8948.169975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.110 4.110 7 C 0.007 3.993 8 H 0.102 0.898 9 C 0.172 3.828 10 N -0.389 5.389 11 O 0.076 5.924 12 C 0.220 3.780 13 C -0.019 4.019 14 S -0.138 6.138 15 C -0.597 4.597 16 H 0.073 0.927 17 C 0.038 3.962 18 N -0.880 5.880 19 Si 1.086 2.914 20 H -0.283 1.283 21 H -0.283 1.283 22 H -0.277 1.277 23 N -0.479 5.479 24 C -0.107 4.107 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.276 0.724 37 H 0.070 0.930 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 1.518 20.045 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.013 4.013 8 H 0.120 0.880 9 C -0.101 4.101 10 N -0.098 5.098 11 O 0.018 5.982 12 C 0.000 4.000 13 C -0.168 4.168 14 S 0.087 5.913 15 C -0.745 4.745 16 H 0.092 0.908 17 C -0.173 4.173 18 N -0.514 5.514 19 Si 0.911 3.089 20 H -0.209 1.209 21 H -0.209 1.209 22 H -0.202 1.202 23 N -0.214 5.214 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.751 2.972 19.072 19.316 hybrid contribution 0.191 -1.483 1.319 1.994 sum 0.942 1.489 20.391 20.467 Atomic orbital electron populations 1.21976 0.95085 1.02319 1.01749 1.21083 0.96142 0.99179 0.94327 0.90830 1.21596 1.00734 0.95535 0.97467 1.21558 1.01248 0.95611 0.97170 1.21575 1.01475 0.98876 0.92956 1.19586 1.01427 0.93516 0.86781 0.87977 1.25763 0.85591 1.00159 0.98594 1.74522 1.21429 1.14393 0.99455 1.85295 1.32592 1.52927 1.27343 1.28177 0.79530 0.95311 0.97022 1.21718 1.05744 1.00241 0.89125 1.84664 1.92751 1.12827 1.01050 1.23555 1.60326 0.95448 0.95171 0.90830 1.26137 0.93402 0.98787 0.98997 1.70838 1.41599 1.02866 1.36069 0.83294 0.76703 0.74089 0.74786 1.20919 1.20904 1.20208 1.71938 1.31436 1.14938 1.03068 1.21624 1.01271 0.93336 0.98351 0.92707 0.92475 0.91955 0.91835 0.91856 0.91320 0.91682 0.91732 0.91210 0.86912 0.87718 0.91140 0.91167 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.50 37.16 0.32 -0.98 16 2 C -0.09 -0.78 3.20 -90.62 -0.29 -1.07 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.91 5.45 -26.73 -0.15 -1.06 16 5 C -0.12 -0.96 5.65 -26.73 -0.15 -1.12 16 6 C -0.11 -1.17 5.19 -26.73 -0.14 -1.31 16 7 C 0.01 0.09 2.38 -91.77 -0.22 -0.13 16 8 H 0.10 1.25 6.43 -51.93 -0.33 0.92 16 9 C 0.17 2.85 6.73 -156.38 -1.05 1.80 16 10 N -0.39 -6.83 12.16 30.90 0.38 -6.46 16 11 O 0.08 1.40 11.31 18.10 0.20 1.60 16 12 C 0.22 4.16 7.77 -13.06 -0.10 4.06 16 13 C -0.02 -0.37 6.30 36.00 0.23 -0.14 16 14 S -0.14 -3.46 20.45 -107.50 -2.20 -5.66 16 15 C -0.60 -16.32 9.50 30.94 0.29 -16.02 16 16 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 17 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 18 N -0.88 -26.29 13.67 55.49 0.76 -25.53 16 19 Si 1.09 23.92 29.92 -169.99 -5.09 18.83 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 N -0.48 -8.98 11.55 -9.87 -0.11 -9.10 16 24 C -0.11 -1.23 4.71 -26.73 -0.13 -1.36 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.53 4.81 -51.93 -0.25 0.29 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.11 2.10 8.14 -51.91 -0.42 1.68 16 35 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 36 H 0.28 8.37 7.12 -40.82 -0.29 8.08 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -30.40 321.52 -8.18 -38.58 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.49 Total: -0.74 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.48 Total: -16.38 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 1.02 Total: -41.08 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.09 Total: 18.83 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.20 Total: -5.66 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.40 -8.18 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230997620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.623 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds