Wall clock time and date at job start Tue Mar 31 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30943 * 123.03867 * 2 1 4 4 C 1.29377 * 117.47000 * 180.02562 * 3 2 1 5 5 C 1.50702 * 124.70369 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46982 * 59.99927 * 5 4 3 7 7 C 1.52995 * 109.47095 * 179.97438 * 5 4 3 8 8 C 1.52991 * 109.46864 * 299.99870 * 5 4 3 9 9 S 1.70923 * 110.59294 * 359.97438 * 4 3 2 10 10 C 1.36780 * 123.04370 * 180.02562 * 2 1 3 11 11 C 1.46563 * 126.17564 * 0.24841 * 10 2 1 12 12 O 1.21726 * 120.00259 * 353.37177 * 11 10 2 13 13 N 1.34772 * 119.99912 * 173.37936 * 11 10 2 14 14 C 1.46501 * 120.00069 * 4.38341 * 13 11 10 15 15 C 1.36892 * 119.99945 * 184.38736 * 13 11 10 16 16 H 1.08001 * 120.00339 * 23.57765 * 15 13 11 17 17 C 1.39013 * 120.00255 * 203.57927 * 15 13 11 18 18 N 1.31399 * 119.99828 * 218.72382 * 17 15 13 19 19 Si 1.86798 * 119.99927 * 38.71743 * 17 15 13 20 20 H 1.48503 * 109.46938 * 93.80404 * 19 17 15 21 21 H 1.48502 * 109.47258 * 213.80869 * 19 17 15 22 22 H 1.48511 * 109.47244 * 333.80913 * 19 17 15 23 23 H 1.08994 * 109.47455 * 269.97676 * 1 2 3 24 24 H 1.09002 * 109.47149 * 29.98487 * 1 2 3 25 25 H 1.09002 * 109.47184 * 149.98128 * 1 2 3 26 26 H 1.09001 * 109.47547 * 59.99580 * 6 5 4 27 27 H 1.08997 * 109.47408 * 180.02562 * 6 5 4 28 28 H 1.09002 * 109.46910 * 299.99996 * 6 5 4 29 29 H 1.09007 * 109.47128 * 60.00417 * 7 5 4 30 30 H 1.08995 * 109.47580 * 179.97438 * 7 5 4 31 31 H 1.09002 * 109.47702 * 300.00690 * 7 5 4 32 32 H 1.08998 * 109.47845 * 60.00341 * 8 5 4 33 33 H 1.09001 * 109.47050 * 180.02562 * 8 5 4 34 34 H 1.08998 * 109.47065 * 299.99413 * 8 5 4 35 35 H 1.08996 * 109.47243 * 61.07715 * 14 13 11 36 36 H 1.09000 * 109.47031 * 181.07631 * 14 13 11 37 37 H 1.08999 * 109.47268 * 301.07464 * 14 13 11 38 38 H 0.97003 * 119.99233 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2209 1.0977 0.0000 4 6 3.5085 0.9722 -0.0005 5 6 4.4827 2.1220 -0.0012 6 6 4.2626 2.9776 1.2480 7 6 5.9129 1.5786 -0.0010 8 6 4.2615 2.9770 -1.2504 9 16 3.9516 -0.6787 -0.0004 10 6 2.2528 -1.1466 -0.0005 11 6 1.7328 -2.5168 -0.0063 12 8 0.5374 -2.7148 0.1105 13 7 2.5782 -3.5578 -0.1407 14 6 4.0241 -3.3263 -0.1845 15 6 2.0858 -4.8315 -0.2363 16 1 1.0758 -4.9955 -0.5821 17 6 2.8856 -5.9140 0.1116 18 7 2.8360 -7.0212 -0.5943 19 14 4.0310 -5.7944 1.5823 20 1 3.3484 -6.3329 2.7863 21 1 5.2615 -6.5822 1.3168 22 1 4.3935 -4.3728 1.8132 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3634 -0.8898 -0.5141 26 1 4.4200 2.3684 2.1381 27 1 4.9668 3.8095 1.2474 28 1 3.2436 3.3646 1.2483 29 1 6.0701 0.9689 -0.8908 30 1 6.6176 2.4102 -0.0019 31 1 6.0702 0.9696 0.8892 32 1 3.2426 3.3641 -1.2502 33 1 4.9664 3.8084 -1.2512 34 1 4.4184 2.3674 -2.1403 35 1 4.3463 -2.8630 0.7480 36 1 4.5405 -4.2772 -0.3152 37 1 4.2613 -2.6664 -1.0190 38 1 3.3944 -7.7763 -0.3517 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263812062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:54 Heat of formation + Delta-G solvation = 11.454227 kcal Electronic energy + Delta-G solvation = -20485.381300 eV Core-core repulsion = 17455.130559 eV Total energy + Delta-G solvation = -3030.250741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.74876 -38.56232 -36.61902 -34.92376 -32.38144 -30.78513 -28.11955 -27.53630 -27.33913 -26.76935 -25.00092 -24.41548 -20.81363 -19.84273 -17.97819 -17.37287 -17.27696 -15.75806 -15.62800 -15.23344 -14.93580 -14.32090 -14.04266 -13.78961 -13.59715 -13.22487 -12.86668 -12.68277 -12.55714 -12.52197 -12.24883 -12.04918 -11.88287 -11.76807 -11.70606 -11.33076 -11.06528 -11.05676 -10.93507 -10.78583 -10.71485 -9.96351 -9.31887 -9.12468 -8.86642 -8.60780 -8.29959 -7.96237 -6.76893 -3.95346 0.77762 1.71729 2.14006 2.91466 3.03835 3.10914 3.19328 3.94343 3.98820 4.13058 4.32065 4.71939 4.81890 4.84501 4.99405 5.37199 5.44189 5.46886 5.50830 5.64162 5.64812 5.69580 5.73854 5.79148 5.86620 5.88067 5.96931 6.14858 6.15328 6.17036 6.20578 6.33128 6.37026 6.87532 7.22123 8.00730 8.16221 8.27038 8.76825 9.09907 9.62601 10.32340 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.005828 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.983311 B = 4802.860338 C = 5577.147458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.103 3.897 3 N -0.470 5.470 4 C 0.010 3.990 5 C 0.014 3.986 6 C -0.132 4.132 7 C -0.153 4.153 8 C -0.132 4.132 9 S 0.157 5.843 10 C -0.253 4.253 11 C 0.508 3.492 12 O -0.561 6.561 13 N -0.437 5.437 14 C 0.056 3.944 15 C -0.320 4.320 16 H 0.117 0.883 17 C 0.069 3.931 18 N -0.818 5.818 19 Si 0.847 3.153 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.253 1.253 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 15.549 1.037 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.034 4.034 3 N -0.183 5.183 4 C -0.265 4.265 5 C 0.010 3.990 6 C -0.191 4.191 7 C -0.211 4.211 8 C -0.191 4.191 9 S 0.416 5.584 10 C -0.377 4.377 11 C 0.298 3.702 12 O -0.446 6.446 13 N -0.154 5.154 14 C -0.090 4.090 15 C -0.447 4.447 16 H 0.134 0.866 17 C -0.142 4.142 18 N -0.450 5.450 19 Si 0.670 3.330 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.177 1.177 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.800 15.201 1.027 17.595 hybrid contribution -0.130 -0.216 0.853 0.890 sum 8.670 14.985 1.880 17.414 Atomic orbital electron populations 1.20430 0.86634 1.03406 1.02861 1.20662 0.98040 0.84968 0.99727 1.65801 1.04582 1.31934 1.16026 1.27369 0.94407 0.99803 1.04911 1.19115 0.91381 0.90954 0.97518 1.21817 1.02595 0.98845 0.95849 1.22015 0.94675 1.01663 1.02791 1.21813 1.02580 0.98852 0.95846 1.84211 1.07217 0.99519 1.67429 1.26180 0.94842 1.00174 1.16546 1.16416 0.86760 0.81706 0.85273 1.90648 1.14404 1.83752 1.55811 1.43604 1.03958 1.06760 1.61114 1.22218 0.84136 1.02069 1.00555 1.19137 1.02755 0.78834 1.43967 0.86571 1.25261 0.96751 0.95047 0.97126 1.70015 1.36540 1.05372 1.33076 0.87516 0.80262 0.79886 0.85299 1.19969 1.20321 1.17673 0.91118 0.91959 0.88523 0.92646 0.92051 0.91589 0.91793 0.91047 0.91854 0.91584 0.92070 0.92594 0.92148 0.89323 0.92141 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 9.65 36.00 0.35 -0.99 16 2 C 0.10 2.02 6.83 -83.50 -0.57 1.45 16 3 N -0.47 -8.29 10.47 -7.47 -0.08 -8.37 16 4 C 0.01 0.15 5.77 -13.31 -0.08 0.08 16 5 C 0.01 0.16 0.99 -155.67 -0.15 0.01 16 6 C -0.13 -1.39 8.45 37.16 0.31 -1.08 16 7 C -0.15 -1.45 7.53 37.15 0.28 -1.17 16 8 C -0.13 -1.38 8.45 37.15 0.31 -1.07 16 9 S 0.16 2.55 16.16 -107.50 -1.74 0.82 16 10 C -0.25 -5.26 6.36 -36.75 -0.23 -5.49 16 11 C 0.51 12.52 7.57 -12.91 -0.10 12.42 16 12 O -0.56 -15.28 14.15 5.17 0.07 -15.21 16 13 N -0.44 -10.74 2.78 -123.73 -0.34 -11.09 16 14 C 0.06 1.12 6.62 59.85 0.40 1.52 16 15 C -0.32 -8.80 9.44 -15.01 -0.14 -8.95 16 16 H 0.12 3.57 7.67 -52.49 -0.40 3.16 16 17 C 0.07 1.80 4.79 -17.45 -0.08 1.71 16 18 N -0.82 -21.99 13.96 55.50 0.77 -21.21 16 19 Si 0.85 18.81 26.33 -169.99 -4.48 14.33 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.25 -5.27 5.03 56.52 0.28 -4.99 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.10 1.93 6.21 -51.93 -0.32 1.61 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.61 7.91 -51.93 -0.41 0.19 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.61 7.91 -51.93 -0.41 0.19 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.13 5.55 -49.44 -0.27 0.86 16 36 H 0.09 1.78 5.01 -51.93 -0.26 1.52 16 37 H 0.06 1.08 6.26 -41.25 -0.26 0.83 16 38 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -30.26 313.64 -6.16 -36.43 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.40 Total: 1.14 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 0.29 Total: -1.57 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.35 Total: -40.67 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.07 Total: -15.21 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.48 Total: 14.33 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.74 Total: 0.82 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.26 -6.16 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263812062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.882 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds