Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29371 * 124.70677 * 2 1 4 4 C 1.30936 * 117.47159 * 179.97438 * 3 2 1 5 5 C 1.50696 * 123.04523 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47344 * 90.02397 * 5 4 3 7 7 C 1.53002 * 109.46992 * 65.00116 * 6 5 4 8 8 C 1.53001 * 109.47350 * 185.00400 * 6 5 4 9 9 C 1.36786 * 113.92006 * 359.97438 * 4 3 2 10 10 C 1.46562 * 126.18020 * 179.97438 * 9 4 3 11 11 O 1.21729 * 119.99774 * 354.62045 * 10 9 4 12 12 N 1.34772 * 119.99772 * 174.62695 * 10 9 4 13 13 C 1.46504 * 119.99712 * 185.72318 * 12 10 9 14 14 C 1.36889 * 120.00213 * 5.71606 * 12 10 9 15 15 H 1.08003 * 119.99905 * 44.69396 * 14 12 10 16 16 C 1.39004 * 120.00238 * 224.68526 * 14 12 10 17 17 N 1.31399 * 119.99947 * 7.38681 * 16 14 12 18 18 Si 1.86803 * 120.00241 * 187.37886 * 16 14 12 19 19 H 1.48498 * 109.46697 * 60.00377 * 18 16 14 20 20 H 1.48498 * 109.46975 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47078 * 300.00558 * 18 16 14 22 22 S 1.70922 * 124.69664 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46610 * 90.00057 * 1 2 3 24 24 H 1.08994 * 109.47348 * 210.00599 * 1 2 3 25 25 H 1.09004 * 109.46813 * 330.00490 * 1 2 3 26 26 H 1.08996 * 109.47584 * 210.02842 * 5 4 3 27 27 H 1.09010 * 109.47055 * 330.02618 * 5 4 3 28 28 H 1.09009 * 109.47152 * 305.00442 * 6 5 4 29 29 H 1.08994 * 109.47029 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.46906 * 300.00617 * 7 6 5 31 31 H 1.08999 * 109.46729 * 60.00235 * 7 6 5 32 32 H 1.08999 * 109.46962 * 60.00028 * 8 6 5 33 33 H 1.09001 * 109.46631 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47168 * 299.99711 * 8 6 5 35 35 H 1.08999 * 109.47022 * 85.05504 * 13 12 10 36 36 H 1.08999 * 109.47106 * 205.05492 * 13 12 10 37 37 H 1.09003 * 109.47121 * 325.05271 * 13 12 10 38 38 H 0.97001 * 119.99820 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0635 0.0000 4 6 3.5426 0.8986 0.0005 5 6 4.5169 2.0483 0.0000 6 6 4.8467 2.4380 1.4423 7 6 5.5824 1.2843 2.1268 8 6 5.7365 3.6826 1.4436 9 6 3.9353 -0.4116 0.0016 10 6 5.3169 -0.9008 0.0018 11 8 6.2409 -0.1146 -0.0978 12 7 5.5643 -2.2210 0.1122 13 6 6.9431 -2.6998 0.2387 14 6 4.5273 -3.1145 0.1062 15 1 3.7303 -3.0120 -0.6154 16 6 4.5001 -4.1540 1.0288 17 7 5.3879 -4.1969 1.9965 18 14 3.2012 -5.4897 0.8930 19 1 3.3325 -6.1763 -0.4172 20 1 3.3872 -6.4741 1.9891 21 1 1.8513 -4.8801 0.9994 22 16 2.4800 -1.4053 0.0006 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 5.4307 1.7499 -0.5137 27 1 4.0728 2.9007 -0.5142 28 1 3.9234 2.6509 1.9814 29 1 5.8177 1.5621 3.1542 30 1 4.9484 0.3976 2.1258 31 1 6.5056 1.0714 1.5878 32 1 5.2123 4.5045 0.9560 33 1 5.9710 3.9604 2.4712 34 1 6.6597 3.4698 0.9047 35 1 7.2460 -2.6626 1.2850 36 1 7.0056 -3.7266 -0.1215 37 1 7.6035 -2.0662 -0.3535 38 1 5.3692 -4.9224 2.6400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267973231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = -10.334685 kcal Electronic energy + Delta-G solvation = -21010.182866 eV Core-core repulsion = 17978.987287 eV Total energy + Delta-G solvation = -3031.195579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.50278 -38.08007 -35.60001 -34.72691 -31.79460 -31.59157 -28.40942 -27.51446 -26.53477 -26.08794 -24.47960 -22.24130 -20.41775 -19.61444 -18.85218 -17.18127 -16.66837 -15.69547 -14.84807 -14.69459 -14.55339 -14.34835 -13.79298 -13.53254 -13.31538 -13.20520 -12.83842 -12.17415 -12.10343 -11.98027 -11.74083 -11.63118 -11.53568 -11.35715 -11.17790 -11.12960 -10.94031 -10.56593 -10.53112 -10.29220 -10.09697 -9.99283 -9.45564 -8.73937 -8.50258 -8.47131 -7.83684 -7.53756 -6.67445 -4.45744 1.19552 2.25292 2.71033 2.98884 3.04079 3.04729 3.34315 3.84542 4.25612 4.66845 4.79264 4.81180 5.43228 5.46309 5.51393 5.61539 5.74638 5.88415 5.93696 6.10592 6.17609 6.18451 6.23901 6.32335 6.42707 6.58613 6.61633 6.64612 6.72680 6.73747 6.92832 7.01906 7.09733 7.11289 7.21969 7.69242 8.05666 8.54875 8.74739 9.26488 9.71037 10.32340 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.008264 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.842303 B = 3387.515069 C = 4640.077574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.054 4.054 3 N -0.486 5.486 4 C 0.103 3.897 5 C -0.041 4.041 6 C -0.080 4.080 7 C -0.144 4.144 8 C -0.141 4.141 9 C -0.244 4.244 10 C 0.542 3.458 11 O -0.584 6.584 12 N -0.437 5.437 13 C 0.117 3.883 14 C -0.342 4.342 15 H 0.096 0.904 16 C 0.063 3.937 17 N -0.838 5.838 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.260 1.260 22 S 0.240 5.760 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 3.557 -1.421 6.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.326 4.326 3 N -0.201 5.201 4 C -0.036 4.036 5 C -0.081 4.081 6 C -0.099 4.099 7 C -0.202 4.202 8 C -0.198 4.198 9 C -0.369 4.369 10 C 0.332 3.668 11 O -0.471 6.471 12 N -0.155 5.155 13 C -0.026 4.026 14 C -0.476 4.476 15 H 0.113 0.887 16 C -0.150 4.150 17 N -0.470 5.470 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.184 1.184 22 S 0.503 5.497 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.971 3.205 -1.285 6.053 hybrid contribution -0.206 -0.197 0.212 0.355 sum -5.178 3.009 -1.073 6.084 Atomic orbital electron populations 1.20236 0.86981 1.02912 1.02602 1.28060 1.02117 0.97488 1.04951 1.65921 1.04518 1.32901 1.16798 1.20536 0.89677 0.93091 1.00310 1.20358 0.97277 0.93074 0.97376 1.20925 0.98069 0.95353 0.95557 1.22006 1.02192 0.97572 0.98388 1.21790 0.99922 0.97062 1.01036 1.25764 0.98629 0.96201 1.16321 1.16994 0.85652 0.82632 0.81569 1.90575 1.44426 1.55092 1.57008 1.43194 1.06427 1.03468 1.62437 1.21314 0.82533 0.97883 1.00864 1.19250 1.02655 1.08708 1.16946 0.88722 1.25615 0.97167 0.98924 0.93249 1.69877 1.33619 1.31376 1.12156 0.86256 0.81270 0.80370 0.78902 1.18939 1.20142 1.18445 1.84998 0.94411 1.06425 1.63849 0.90714 0.90965 0.90769 0.87822 0.91925 0.92401 0.94776 0.93029 0.90177 0.93287 0.93220 0.92449 0.92714 0.92407 0.93871 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.46 36.01 0.38 -0.55 16 2 C -0.05 -1.00 7.37 -13.31 -0.10 -1.10 16 3 N -0.49 -9.96 10.49 -7.47 -0.08 -10.04 16 4 C 0.10 2.21 5.62 -83.50 -0.47 1.74 16 5 C -0.04 -0.80 4.82 -27.89 -0.13 -0.93 16 6 C -0.08 -1.43 2.91 -90.62 -0.26 -1.70 16 7 C -0.14 -2.88 7.68 37.16 0.29 -2.60 16 8 C -0.14 -2.07 9.19 37.16 0.34 -1.73 16 9 C -0.24 -5.55 5.35 -36.75 -0.20 -5.74 16 10 C 0.54 13.24 6.37 -12.91 -0.08 13.15 16 11 O -0.58 -14.49 11.07 5.16 0.06 -14.44 16 12 N -0.44 -10.77 2.88 -123.73 -0.36 -11.12 16 13 C 0.12 2.69 8.91 59.85 0.53 3.23 16 14 C -0.34 -8.19 6.93 -15.01 -0.10 -8.29 16 15 H 0.10 2.19 5.28 -31.77 -0.17 2.03 16 16 C 0.06 1.47 5.23 -17.45 -0.09 1.38 16 17 N -0.84 -20.69 11.96 55.50 0.66 -20.03 16 18 Si 0.91 17.84 29.56 -169.99 -5.02 12.82 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 S 0.24 4.81 18.52 -107.50 -1.99 2.82 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.10 2.16 5.95 -51.93 -0.31 1.85 16 27 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 28 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.17 5.79 -51.93 -0.30 0.87 16 31 H 0.08 1.72 6.12 -51.93 -0.32 1.40 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 1.31 7.71 -51.93 -0.40 0.91 16 36 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 37 H 0.04 0.94 7.50 -51.93 -0.39 0.55 16 38 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -27.06 314.48 -7.13 -34.19 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.24 Total: 4.21 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 0.10 Total: -3.14 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.23 Total: -41.19 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.06 Total: -14.44 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.02 Total: 12.82 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.99 Total: 2.82 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.06 -7.13 -34.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267973231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.855 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds