Wall clock time and date at job start Tue Mar 31 2020 05:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99692 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00146 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47306 * 180.02562 * 12 11 10 14 14 H 1.08013 * 120.00022 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00342 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00351 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 359.97438 * 15 13 12 18 18 H 1.48491 * 109.47151 * 90.00104 * 17 15 13 19 19 H 1.48504 * 109.46702 * 209.99967 * 17 15 13 20 20 H 1.48497 * 109.46695 * 329.99674 * 17 15 13 21 21 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 22 22 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 24 24 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 25 25 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 26 26 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 27 27 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 28 28 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 29 29 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 30 30 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 31 31 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 32 32 H 0.96999 * 120.00043 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.46876 * 299.99570 * 11 10 8 34 34 H 1.08996 * 109.47565 * 59.99371 * 11 10 8 35 35 H 1.09000 * 109.46986 * 299.99564 * 12 11 10 36 36 H 1.08996 * 109.47407 * 59.99335 * 12 11 10 37 37 H 0.96996 * 120.00389 * 179.97438 * 16 15 13 38 38 H 1.08002 * 126.03735 * 179.76609 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2274 4.1125 -1.1821 8 6 4.9350 5.0232 -2.3467 9 8 4.0211 4.7674 -3.1019 10 7 5.6890 6.1219 -2.5490 11 6 5.4043 7.0074 -3.6808 12 6 6.3985 8.1704 -3.6810 13 6 6.1053 9.0817 -4.8449 14 1 5.2914 8.8539 -5.5175 15 6 6.8758 10.2062 -5.0512 16 7 6.6203 11.0012 -6.0672 17 14 8.2829 10.6006 -3.8875 18 1 9.5282 9.9602 -4.3816 19 1 8.4747 12.0718 -3.8235 20 1 7.9642 10.0836 -2.5324 21 6 3.9354 -0.4006 -0.0039 22 16 2.4857 -1.4020 0.0006 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 5.5448 1.6353 -0.0894 27 1 4.4369 2.5834 0.9312 28 1 4.3272 2.3907 -2.1132 29 1 3.2192 3.3388 -1.0925 30 1 5.1332 4.6712 -0.2509 31 1 6.2418 3.7235 -1.2714 32 1 6.4196 6.3266 -1.9448 33 1 5.4982 6.4485 -4.6119 34 1 4.3902 7.3967 -3.5915 35 1 6.3042 8.7291 -2.7499 36 1 7.4127 7.7814 -3.7701 37 1 7.1621 11.7926 -6.2121 38 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273084973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:47 Heat of formation + Delta-G solvation = -21.674810 kcal Electronic energy + Delta-G solvation = -18454.536677 eV Core-core repulsion = 15422.849354 eV Total energy + Delta-G solvation = -3031.687323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24403 -39.26822 -35.27008 -34.65383 -32.79461 -32.35837 -30.30057 -28.97761 -27.72623 -24.93648 -23.33231 -21.90801 -20.75633 -20.01770 -19.82946 -17.85163 -16.90818 -16.57189 -15.86363 -15.62781 -15.27699 -15.01826 -14.41844 -14.18636 -14.08982 -13.63315 -13.46575 -13.14023 -12.96607 -12.59076 -12.50884 -12.45609 -12.01103 -11.54813 -11.47468 -11.33369 -11.17590 -10.77663 -10.37783 -10.24602 -9.95718 -9.88398 -9.68715 -9.45619 -9.26065 -8.95129 -8.63050 -8.48577 -6.10340 -4.10369 0.42449 1.06990 1.43854 2.51926 3.01128 3.25480 3.32994 3.34452 3.65404 3.77697 4.38182 4.57329 4.73113 4.88910 4.93966 4.94615 5.06646 5.11695 5.22262 5.22541 5.38863 5.49572 5.52005 5.57374 5.60888 5.94166 6.11288 6.15627 6.23424 6.34806 6.58155 6.80839 7.16101 7.24792 7.50456 7.67900 7.96200 8.44816 8.64347 8.94204 9.49734 11.02746 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046280 B = 0.002264 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.872826 B =12365.983359 C =12721.155350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.053 3.947 3 N -0.466 5.466 4 C 0.079 3.921 5 C -0.046 4.046 6 C -0.095 4.095 7 C -0.141 4.141 8 C 0.504 3.496 9 O -0.547 6.547 10 N -0.729 5.729 11 C 0.129 3.871 12 C -0.022 4.022 13 C -0.523 4.523 14 H 0.075 0.925 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.263 4.263 22 S 0.102 5.898 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.396 0.604 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.017 0.983 37 H 0.265 0.735 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 -25.514 17.378 31.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.225 4.225 3 N -0.181 5.181 4 C -0.053 4.053 5 C -0.086 4.086 6 C -0.133 4.133 7 C -0.181 4.181 8 C 0.289 3.711 9 O -0.425 6.425 10 N -0.379 5.379 11 C 0.007 3.993 12 C -0.060 4.060 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.134 4.134 16 N -0.537 5.537 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.402 4.402 22 S 0.356 5.644 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.229 0.771 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.557 -26.090 16.722 31.675 hybrid contribution 1.885 1.131 0.737 2.319 sum -4.671 -24.959 17.459 30.815 Atomic orbital electron populations 1.20468 0.85114 1.04208 1.04133 1.27092 1.01856 0.90772 1.02820 1.66083 1.04596 1.31442 1.15964 1.20308 0.90198 0.94238 1.00534 1.20271 0.95390 0.92706 1.00201 1.21222 1.00090 0.94568 0.97454 1.21689 1.01454 0.97045 0.97945 1.20619 0.82280 0.81716 0.86435 1.90691 1.30801 1.73334 1.47696 1.46355 1.34529 1.25550 1.31502 1.21484 1.00194 0.90623 0.87011 1.19790 0.94375 0.93374 0.98422 1.20935 1.17332 1.07092 1.10751 0.90646 1.25013 0.97330 0.95852 0.95175 1.69904 1.40126 1.14519 1.29153 0.86737 0.82775 0.77534 0.81943 1.20242 1.21275 1.19080 1.26811 1.03034 0.95696 1.14653 1.83931 0.98289 1.13169 1.68968 0.89380 0.90138 0.89115 0.90148 0.89962 0.91341 0.90173 0.89020 0.89158 0.77129 0.92094 0.92050 0.96022 0.96474 0.92560 0.80623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.46 36.01 0.38 -0.11 16 2 C 0.05 0.50 7.39 -13.46 -0.10 0.40 16 3 N -0.47 -5.54 10.34 -8.06 -0.08 -5.62 16 4 C 0.08 0.83 6.08 -84.22 -0.51 0.32 16 5 C -0.05 -0.41 5.71 -27.88 -0.16 -0.57 16 6 C -0.09 -1.12 4.40 -26.73 -0.12 -1.23 16 7 C -0.14 -1.55 5.70 -27.88 -0.16 -1.71 16 8 C 0.50 8.25 7.83 -10.98 -0.09 8.16 16 9 O -0.55 -11.38 15.98 5.56 0.09 -11.30 16 10 N -0.73 -12.09 5.56 -60.30 -0.33 -12.43 16 11 C 0.13 2.70 5.61 -4.04 -0.02 2.68 16 12 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 13 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 14 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 17 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 21 C -0.26 -2.29 11.07 29.12 0.32 -1.96 16 22 S 0.10 0.80 23.18 -107.50 -2.49 -1.69 16 23 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 29 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.40 5.34 8.47 -40.82 -0.35 4.99 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 36 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 38 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -34.76 337.68 -8.39 -43.15 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.76 Total: 1.03 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.00 Total: -7.94 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.36 Total: -44.82 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.76 -8.39 -43.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273084973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.474 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds