Wall clock time and date at job start Tue Mar 31 2020 05:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99692 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00146 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47306 * 180.02562 * 12 11 10 14 14 H 1.08013 * 120.00022 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00342 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00351 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 359.97438 * 15 13 12 18 18 H 1.48491 * 109.47151 * 90.00104 * 17 15 13 19 19 H 1.48504 * 109.46702 * 209.99967 * 17 15 13 20 20 H 1.48497 * 109.46695 * 329.99674 * 17 15 13 21 21 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 22 22 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 24 24 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 25 25 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 26 26 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 27 27 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 28 28 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 29 29 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 30 30 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 31 31 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 32 32 H 0.96999 * 120.00043 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.46876 * 299.99570 * 11 10 8 34 34 H 1.08996 * 109.47565 * 59.99371 * 11 10 8 35 35 H 1.09000 * 109.46986 * 299.99564 * 12 11 10 36 36 H 1.08996 * 109.47407 * 59.99335 * 12 11 10 37 37 H 0.96996 * 120.00389 * 179.97438 * 16 15 13 38 38 H 1.08002 * 126.03735 * 179.76609 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2274 4.1125 -1.1821 8 6 4.9350 5.0232 -2.3467 9 8 4.0211 4.7674 -3.1019 10 7 5.6890 6.1219 -2.5490 11 6 5.4043 7.0074 -3.6808 12 6 6.3985 8.1704 -3.6810 13 6 6.1053 9.0817 -4.8449 14 1 5.2914 8.8539 -5.5175 15 6 6.8758 10.2062 -5.0512 16 7 6.6203 11.0012 -6.0672 17 14 8.2829 10.6006 -3.8875 18 1 9.5282 9.9602 -4.3816 19 1 8.4747 12.0718 -3.8235 20 1 7.9642 10.0836 -2.5324 21 6 3.9354 -0.4006 -0.0039 22 16 2.4857 -1.4020 0.0006 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 5.5448 1.6353 -0.0894 27 1 4.4369 2.5834 0.9312 28 1 4.3272 2.3907 -2.1132 29 1 3.2192 3.3388 -1.0925 30 1 5.1332 4.6712 -0.2509 31 1 6.2418 3.7235 -1.2714 32 1 6.4196 6.3266 -1.9448 33 1 5.4982 6.4485 -4.6119 34 1 4.3902 7.3967 -3.5915 35 1 6.3042 8.7291 -2.7499 36 1 7.4127 7.7814 -3.7701 37 1 7.1621 11.7926 -6.2121 38 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273084973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:47 Heat of formation + Delta-G solvation = -46.553605 kcal Electronic energy + Delta-G solvation = -18455.615503 eV Core-core repulsion = 15422.849354 eV Total energy + Delta-G solvation = -3032.766149 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98663 -40.57812 -36.74377 -35.70015 -34.78864 -33.13226 -32.03487 -29.74948 -28.61112 -26.64598 -24.22958 -22.90606 -22.47492 -21.19693 -20.62187 -19.01074 -18.58155 -17.78569 -16.94645 -16.72386 -16.23264 -16.17706 -16.01600 -15.65034 -15.00480 -14.69961 -14.65380 -14.44032 -14.03519 -13.72456 -13.35027 -13.27492 -13.05930 -13.02248 -12.75282 -12.39553 -12.23133 -12.15619 -12.03563 -11.75939 -11.62668 -11.52717 -10.81770 -10.79474 -10.56016 -10.34448 -10.02537 -9.58893 -8.30719 -6.38498 -0.22189 0.46258 0.79574 1.38947 1.42223 1.53588 1.71802 1.81246 2.35488 2.36814 3.04137 3.19864 3.82134 3.88889 4.04765 4.17246 4.34799 4.37780 4.40768 4.48104 4.54384 4.63412 4.67393 4.74039 4.75784 4.81176 4.84720 5.04287 5.16875 5.26426 5.28430 5.39879 5.42410 5.47703 5.65694 6.21440 6.65088 6.72017 6.85322 7.26019 7.36468 8.86232 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046280 B = 0.002264 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.872826 B =12365.983359 C =12721.155350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.032 3.968 3 N -0.507 5.507 4 C 0.050 3.950 5 C -0.038 4.038 6 C -0.088 4.088 7 C -0.126 4.126 8 C 0.498 3.502 9 O -0.600 6.600 10 N -0.718 5.718 11 C 0.143 3.857 12 C -0.011 4.011 13 C -0.542 4.542 14 H 0.025 0.975 15 C 0.001 3.999 16 N -0.951 5.951 17 Si 0.963 3.037 18 H -0.264 1.264 19 H -0.287 1.287 20 H -0.235 1.235 21 C -0.265 4.265 22 S 0.138 5.862 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.416 0.584 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.268 0.732 38 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 -27.123 20.531 34.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.245 4.245 3 N -0.223 5.223 4 C -0.082 4.082 5 C -0.077 4.077 6 C -0.127 4.127 7 C -0.165 4.165 8 C 0.287 3.713 9 O -0.481 6.481 10 N -0.370 5.370 11 C 0.019 3.981 12 C -0.049 4.049 13 C -0.580 4.580 14 H 0.044 0.956 15 C -0.196 4.196 16 N -0.591 5.591 17 Si 0.784 3.216 18 H -0.189 1.189 19 H -0.213 1.213 20 H -0.158 1.158 21 C -0.403 4.403 22 S 0.392 5.608 23 H 0.110 0.890 24 H 0.123 0.877 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.253 0.747 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.096 -27.729 19.914 34.384 hybrid contribution 0.997 1.558 -0.345 1.881 sum -3.099 -26.171 19.570 32.826 Atomic orbital electron populations 1.20593 0.83576 1.05175 1.04662 1.27593 1.03176 0.91258 1.02517 1.66113 1.05698 1.33075 1.17456 1.20615 0.90182 0.95469 1.01890 1.20268 0.96576 0.91929 0.98959 1.21089 0.98582 0.95147 0.97852 1.21717 1.02986 0.95598 0.96211 1.21674 0.80938 0.81602 0.87111 1.90679 1.33080 1.74453 1.49925 1.46112 1.35345 1.25007 1.30510 1.20985 0.98538 0.90587 0.88032 1.19642 0.95644 0.93033 0.96600 1.21281 1.16161 1.08674 1.11916 0.95642 1.26143 1.00819 0.95366 0.97232 1.70082 1.41997 1.15382 1.31683 0.85487 0.78351 0.77329 0.80384 1.18863 1.21268 1.15792 1.27186 1.04573 0.95353 1.13224 1.83744 0.97350 1.11760 1.67912 0.88982 0.87718 0.89617 0.87151 0.89034 0.93642 0.93612 0.85932 0.85341 0.74709 0.94236 0.94372 0.94383 0.94426 0.92308 0.78124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.46 71.24 0.75 -0.22 16 2 C 0.03 0.59 7.39 88.52 0.65 1.25 16 3 N -0.51 -12.05 10.34 -179.40 -1.86 -13.91 16 4 C 0.05 0.99 6.08 41.52 0.25 1.24 16 5 C -0.04 -0.59 5.71 29.85 0.17 -0.42 16 6 C -0.09 -1.99 4.40 30.60 0.13 -1.85 16 7 C -0.13 -2.38 5.70 29.85 0.17 -2.21 16 8 C 0.50 15.76 7.83 87.66 0.69 16.45 16 9 O -0.60 -25.66 15.98 -3.03 -0.05 -25.71 16 10 N -0.72 -22.47 5.56 -463.06 -2.57 -25.04 16 11 C 0.14 6.01 5.61 86.38 0.48 6.50 16 12 C -0.01 -0.52 4.16 29.85 0.12 -0.39 16 13 C -0.54 -31.48 9.66 25.60 0.25 -31.24 16 14 H 0.03 1.66 7.99 -2.90 -0.02 1.64 16 15 C 0.00 0.08 5.47 84.65 0.46 0.54 16 16 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 17 Si 0.96 42.39 27.47 68.60 1.88 44.27 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 21 C -0.26 -4.05 11.07 66.78 0.74 -3.31 16 22 S 0.14 1.94 23.18 -56.49 -1.31 0.63 16 23 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 1.05 8.03 -2.39 -0.02 1.03 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 29 H 0.04 1.33 8.03 -2.39 -0.02 1.31 16 30 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.42 9.63 8.47 -92.71 -0.79 8.84 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 36 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -80.73 337.68 1.48 -79.25 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.21 Total: 13.83 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.87 Total: -13.66 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -4.13 Total: -98.61 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.31 Total: 0.63 kcal Total: -80.73 1.48 -79.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273084973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.696 kcal (2) G-P(sol) polarization free energy of solvation -80.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds