Wall clock time and date at job start Tue Mar 31 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46564 * 2 1 4 4 C 1.53002 * 109.46796 * 119.99756 * 2 1 3 5 5 C 1.52998 * 109.47049 * 60.00319 * 4 2 1 6 6 C 1.52995 * 109.47457 * 59.99996 * 5 4 2 7 7 C 1.53008 * 109.46840 * 299.99745 * 6 5 4 8 8 C 1.52993 * 109.47016 * 239.99631 * 2 1 3 9 9 H 1.09005 * 109.47071 * 180.02562 * 8 2 1 10 10 C 1.50705 * 109.47102 * 60.00144 * 8 2 1 11 11 N 1.29942 * 126.28617 * 299.97010 * 10 8 2 12 12 O 1.21300 * 110.24970 * 179.72438 * 11 10 8 13 13 C 1.33641 * 109.81057 * 0.47129 * 12 11 10 14 14 C 1.50703 * 126.55451 * 179.79798 * 13 12 11 15 15 S 1.81000 * 109.47038 * 269.69222 * 14 13 12 16 16 C 1.76209 * 99.99875 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99972 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99599 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99397 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00627 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00578 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00328 * 20 18 16 23 23 H 1.48498 * 109.47210 * 150.00039 * 20 18 16 24 24 N 1.31136 * 106.89898 * 359.53684 * 13 12 11 25 25 H 1.09007 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47411 * 300.00375 * 1 2 3 27 27 H 1.08997 * 109.47198 * 60.00425 * 1 2 3 28 28 H 1.09000 * 109.47033 * 300.00100 * 4 2 1 29 29 H 1.08995 * 109.46910 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47226 * 299.99045 * 5 4 2 31 31 H 1.09005 * 109.46908 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47479 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.47007 * 59.99628 * 6 5 4 34 34 H 1.08995 * 109.47149 * 300.00300 * 7 6 5 35 35 H 1.09000 * 109.46879 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47235 * 149.68882 * 14 13 12 37 37 H 1.09005 * 109.46867 * 29.68921 * 14 13 12 38 38 H 0.97005 * 119.99723 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1638 -1.2492 8 6 2.0400 -0.7213 -1.2491 9 1 3.1300 -0.7217 -1.2489 10 6 1.5376 -0.0109 -2.4797 11 7 0.2938 0.1766 -2.8055 12 8 0.2211 0.7868 -3.8513 13 6 1.4490 1.0457 -4.3109 14 6 1.7959 1.7788 -5.5811 15 16 1.9352 0.5942 -6.9425 16 6 2.3345 1.6908 -8.2627 17 1 2.4207 2.7512 -8.0765 18 6 2.5371 1.1920 -9.5419 19 7 2.8358 2.0112 -10.5280 20 14 2.3873 -0.6419 -9.8641 21 1 3.7103 -1.2881 -9.6710 22 1 1.4056 -1.2318 -8.9188 23 1 1.9268 -0.8636 -11.2584 24 7 2.2945 0.5450 -3.4425 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6765 -0.2073 2.1393 29 1 3.1299 -0.7208 1.2496 30 1 0.4400 -2.1637 1.2494 31 1 1.8936 -2.6776 2.1391 32 1 1.6763 -3.9126 -0.0001 33 1 3.1299 -2.8850 0.0002 34 1 0.4400 -2.1638 -1.2492 35 1 1.8937 -2.6774 -2.1391 36 1 2.7454 2.2984 -5.4530 37 1 1.0132 2.5027 -5.8081 38 1 2.9778 1.6626 -11.4221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273856758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:18 Heat of formation + Delta-G solvation = 40.062826 kcal Electronic energy + Delta-G solvation = -19791.987550 eV Core-core repulsion = 16762.977371 eV Total energy + Delta-G solvation = -3029.010179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.31549 -39.55985 -35.58498 -33.54114 -32.57223 -32.09752 -30.83996 -28.52391 -27.17663 -25.76385 -24.27568 -23.01366 -22.36361 -21.09478 -18.72628 -17.95550 -17.81712 -17.06568 -16.10167 -15.17885 -14.91856 -14.75087 -14.44454 -14.38326 -14.11693 -13.47143 -13.21897 -13.05012 -12.93220 -12.59164 -12.22211 -11.90495 -11.86194 -11.58349 -11.34027 -11.28853 -11.21481 -11.11844 -11.00303 -10.71801 -10.57573 -10.31088 -10.25561 -10.01682 -9.48231 -9.13345 -8.77927 -7.15419 -6.40743 -4.17377 1.27837 2.30528 2.89269 3.09343 3.23106 3.36502 3.44348 3.69051 4.17330 4.20279 4.45507 4.48773 4.60880 4.65884 4.91774 4.97456 4.98776 5.08649 5.13853 5.21936 5.27037 5.37295 5.46250 5.53905 5.64190 5.71504 5.78348 5.80979 5.83653 5.90280 5.90782 6.01590 6.09531 6.10919 6.14556 6.29196 6.38314 7.82228 8.31428 8.42225 9.03282 10.68150 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.003612 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.745745 B = 7749.321035 C = 8136.066633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.114 4.114 8 C 0.012 3.988 9 H 0.099 0.901 10 C 0.174 3.826 11 N -0.383 5.383 12 O 0.073 5.927 13 C 0.219 3.781 14 C -0.012 4.012 15 S -0.165 6.165 16 C -0.512 4.512 17 H 0.096 0.904 18 C 0.098 3.902 19 N -0.874 5.874 20 Si 0.856 3.144 21 H -0.266 1.266 22 H -0.238 1.238 23 H -0.271 1.271 24 N -0.479 5.479 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 -6.211 21.559 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.008 4.008 9 H 0.117 0.883 10 C -0.099 4.099 11 N -0.094 5.094 12 O 0.017 5.983 13 C -0.001 4.001 14 C -0.160 4.160 15 S 0.061 5.939 16 C -0.660 4.660 17 H 0.114 0.886 18 C -0.111 4.111 19 N -0.509 5.509 20 Si 0.681 3.319 21 H -0.191 1.191 22 H -0.162 1.162 23 H -0.196 1.196 24 N -0.213 5.213 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.240 -7.655 21.988 23.507 hybrid contribution 0.232 0.743 -0.721 1.061 sum -3.008 -6.912 21.267 22.563 Atomic orbital electron populations 1.22124 0.94509 1.02611 1.02399 1.21087 0.96881 0.99069 0.93221 0.91083 1.21537 1.00699 0.95647 0.96971 1.21603 1.01251 0.95497 0.97692 1.21511 1.00987 0.98869 0.94006 1.21628 1.01777 0.93301 0.98571 1.19584 1.01025 0.93587 0.86645 0.88290 1.25695 0.85596 1.00130 0.98515 1.74534 1.21282 1.14275 0.99274 1.85305 1.32611 1.52883 1.27494 1.28162 0.79547 0.95433 0.97007 1.21684 1.06238 0.99716 0.88401 1.84643 1.93052 1.13968 1.02270 1.22087 1.55818 0.95341 0.92725 0.88626 1.24696 0.93099 0.98531 0.94802 1.69920 1.44737 1.35173 1.01107 0.86751 0.80573 0.85055 0.79506 1.19075 1.16209 1.19647 1.71949 1.31433 1.14948 1.02992 0.91974 0.93013 0.90934 0.91628 0.91702 0.91506 0.91988 0.91618 0.91666 0.90817 0.91529 0.86519 0.87262 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.10 37.16 0.30 -1.39 16 2 C -0.08 -0.85 2.71 -90.62 -0.25 -1.10 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.11 -0.89 5.45 -26.73 -0.15 -1.03 16 5 C -0.12 -0.93 5.65 -26.73 -0.15 -1.08 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.11 -1.24 4.91 -26.73 -0.13 -1.37 16 8 C 0.01 0.14 2.44 -91.77 -0.22 -0.08 16 9 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 10 C 0.17 2.73 6.56 -156.37 -1.03 1.70 16 11 N -0.38 -6.29 9.53 30.90 0.29 -5.99 16 12 O 0.07 1.28 11.31 18.11 0.20 1.48 16 13 C 0.22 3.91 7.77 -13.05 -0.10 3.81 16 14 C -0.01 -0.22 6.30 36.01 0.23 0.01 16 15 S -0.16 -3.85 19.39 -107.50 -2.08 -5.93 16 16 C -0.51 -13.95 10.04 30.94 0.31 -13.64 16 17 H 0.10 2.71 8.03 -52.49 -0.42 2.29 16 18 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 19 N -0.87 -25.37 13.97 55.49 0.78 -24.60 16 20 Si 0.86 20.68 27.74 -169.99 -4.72 15.96 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 N -0.48 -8.54 11.55 -9.87 -0.11 -8.66 16 25 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.94 5.51 -51.93 -0.29 0.65 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.52 6.43 -51.93 -0.33 0.18 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.84 6.43 -51.93 -0.33 0.51 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 37 H 0.11 1.83 8.14 -51.91 -0.42 1.41 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 314.87 15.07 4.75 4.75 Total: -1.00 -29.19 314.87 -7.77 -36.95 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.43 Total: -1.32 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.44 Total: -12.65 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.96 Total: -39.25 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.48 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.72 Total: 15.96 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.08 Total: -5.93 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.19 -7.77 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273856758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.015 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds