Wall clock time and date at job start Tue Mar 31 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46564 * 2 1 4 4 C 1.53002 * 109.46796 * 119.99756 * 2 1 3 5 5 C 1.52998 * 109.47049 * 60.00319 * 4 2 1 6 6 C 1.52995 * 109.47457 * 59.99996 * 5 4 2 7 7 C 1.53008 * 109.46840 * 299.99745 * 6 5 4 8 8 C 1.52993 * 109.47016 * 239.99631 * 2 1 3 9 9 H 1.09005 * 109.47071 * 180.02562 * 8 2 1 10 10 C 1.50705 * 109.47102 * 60.00144 * 8 2 1 11 11 N 1.29942 * 126.28617 * 299.97010 * 10 8 2 12 12 O 1.21300 * 110.24970 * 179.72438 * 11 10 8 13 13 C 1.33641 * 109.81057 * 0.47129 * 12 11 10 14 14 C 1.50703 * 126.55451 * 179.79798 * 13 12 11 15 15 S 1.81000 * 109.47038 * 269.69222 * 14 13 12 16 16 C 1.76209 * 99.99875 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99972 * 359.97438 * 16 15 14 18 18 C 1.38798 * 119.99599 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99397 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00627 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00578 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00328 * 20 18 16 23 23 H 1.48498 * 109.47210 * 150.00039 * 20 18 16 24 24 N 1.31136 * 106.89898 * 359.53684 * 13 12 11 25 25 H 1.09007 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47411 * 300.00375 * 1 2 3 27 27 H 1.08997 * 109.47198 * 60.00425 * 1 2 3 28 28 H 1.09000 * 109.47033 * 300.00100 * 4 2 1 29 29 H 1.08995 * 109.46910 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47226 * 299.99045 * 5 4 2 31 31 H 1.09005 * 109.46908 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47479 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.47007 * 59.99628 * 6 5 4 34 34 H 1.08995 * 109.47149 * 300.00300 * 7 6 5 35 35 H 1.09000 * 109.46879 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47235 * 149.68882 * 14 13 12 37 37 H 1.09005 * 109.46867 * 29.68921 * 14 13 12 38 38 H 0.97005 * 119.99723 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1638 -1.2492 8 6 2.0400 -0.7213 -1.2491 9 1 3.1300 -0.7217 -1.2489 10 6 1.5376 -0.0109 -2.4797 11 7 0.2938 0.1766 -2.8055 12 8 0.2211 0.7868 -3.8513 13 6 1.4490 1.0457 -4.3109 14 6 1.7959 1.7788 -5.5811 15 16 1.9352 0.5942 -6.9425 16 6 2.3345 1.6908 -8.2627 17 1 2.4207 2.7512 -8.0765 18 6 2.5371 1.1920 -9.5419 19 7 2.8358 2.0112 -10.5280 20 14 2.3873 -0.6419 -9.8641 21 1 3.7103 -1.2881 -9.6710 22 1 1.4056 -1.2318 -8.9188 23 1 1.9268 -0.8636 -11.2584 24 7 2.2945 0.5450 -3.4425 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6765 -0.2073 2.1393 29 1 3.1299 -0.7208 1.2496 30 1 0.4400 -2.1637 1.2494 31 1 1.8936 -2.6776 2.1391 32 1 1.6763 -3.9126 -0.0001 33 1 3.1299 -2.8850 0.0002 34 1 0.4400 -2.1638 -1.2492 35 1 1.8937 -2.6774 -2.1391 36 1 2.7454 2.2984 -5.4530 37 1 1.0132 2.5027 -5.8081 38 1 2.9778 1.6626 -11.4221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273856758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:18 Heat of formation + Delta-G solvation = 22.957032 kcal Electronic energy + Delta-G solvation = -19792.729313 eV Core-core repulsion = 16762.977371 eV Total energy + Delta-G solvation = -3029.751942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.65602 -40.38117 -36.88881 -34.79840 -34.69089 -32.89380 -31.78134 -29.95638 -28.04106 -27.86749 -25.36374 -24.18666 -23.15814 -22.18629 -20.02837 -19.37025 -19.22954 -18.43586 -17.16463 -16.96267 -16.33437 -15.91652 -15.76146 -15.41115 -15.06488 -14.91288 -14.68520 -14.10385 -13.85460 -13.54391 -13.50132 -13.44813 -13.12603 -13.03534 -12.76915 -12.57889 -12.37677 -12.28260 -12.00750 -11.94018 -11.88931 -11.34064 -11.19725 -11.18793 -11.07641 -10.86124 -10.54500 -9.10476 -8.53140 -6.28192 -0.16917 0.87844 1.25906 1.31678 1.45640 1.56391 1.77062 2.21475 2.45326 2.62005 2.85370 2.97898 3.61341 3.66810 3.76696 3.99225 4.07425 4.20817 4.26790 4.35149 4.38152 4.45169 4.49443 4.55833 4.68900 4.74311 4.79481 4.92237 4.98839 5.06099 5.12814 5.18306 5.22921 5.31439 5.39248 5.40946 5.60778 5.69566 6.12446 6.90087 7.06799 8.59132 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.003612 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.745745 B = 7749.321035 C = 8136.066633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.080 4.080 3 H 0.063 0.937 4 C -0.106 4.106 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.111 4.111 8 C 0.009 3.991 9 H 0.102 0.898 10 C 0.177 3.823 11 N -0.385 5.385 12 O 0.066 5.934 13 C 0.213 3.787 14 C 0.003 3.997 15 S -0.177 6.177 16 C -0.521 4.521 17 H 0.070 0.930 18 C 0.048 3.952 19 N -0.913 5.913 20 Si 0.913 3.087 21 H -0.262 1.262 22 H -0.233 1.233 23 H -0.260 1.260 24 N -0.492 5.492 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 -7.725 23.757 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.099 4.099 3 H 0.082 0.918 4 C -0.144 4.144 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.011 4.011 9 H 0.121 0.879 10 C -0.096 4.096 11 N -0.096 5.096 12 O 0.012 5.988 13 C -0.007 4.007 14 C -0.146 4.146 15 S 0.048 5.952 16 C -0.669 4.669 17 H 0.088 0.912 18 C -0.158 4.158 19 N -0.551 5.551 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.157 1.157 23 H -0.184 1.184 24 N -0.228 5.228 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.321 -9.161 24.187 26.076 hybrid contribution 0.241 1.290 -1.276 1.830 sum -3.080 -7.871 22.911 24.420 Atomic orbital electron populations 1.22086 0.94784 1.02677 1.01804 1.21091 0.96578 0.98810 0.93448 0.91827 1.21529 1.01134 0.95773 0.95935 1.21605 1.01193 0.95131 0.97877 1.21506 1.01351 0.99123 0.92947 1.21608 1.01250 0.92561 0.99530 1.19859 1.01234 0.94174 0.85873 0.87947 1.26380 0.85105 0.99241 0.98897 1.74577 1.21663 1.14381 0.98970 1.85304 1.32416 1.53167 1.27925 1.27917 0.79940 0.95922 0.96966 1.21579 1.07490 0.98680 0.86831 1.84396 1.92980 1.14986 1.02788 1.22249 1.55222 0.95082 0.94334 0.91171 1.25544 0.92837 1.02698 0.94704 1.70006 1.46058 1.37223 1.01786 0.85898 0.80747 0.79951 0.79952 1.18700 1.15664 1.18387 1.71963 1.32028 1.15195 1.03580 0.91589 0.91568 0.93453 0.90305 0.90993 0.91637 0.90163 0.90600 0.91041 0.91584 0.92938 0.85737 0.85475 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.10 71.98 0.58 -2.49 16 2 C -0.08 -1.49 2.71 -10.80 -0.03 -1.52 16 3 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.11 -1.38 5.45 30.59 0.17 -1.21 16 5 C -0.12 -1.43 5.65 30.59 0.17 -1.26 16 6 C -0.11 -1.56 5.92 30.60 0.18 -1.38 16 7 C -0.11 -2.25 4.91 30.60 0.15 -2.10 16 8 C 0.01 0.20 2.44 -11.54 -0.03 0.17 16 9 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 10 C 0.18 5.41 6.56 138.47 0.91 6.32 16 11 N -0.38 -12.40 9.53 -60.34 -0.57 -12.98 16 12 O 0.07 2.27 11.31 74.85 0.85 3.12 16 13 C 0.21 7.48 7.77 88.38 0.69 8.16 16 14 C 0.00 0.11 6.30 71.24 0.45 0.56 16 15 S -0.18 -8.19 19.39 -56.49 -1.10 -9.28 16 16 C -0.52 -28.70 10.04 67.95 0.68 -28.02 16 17 H 0.07 4.09 8.03 -2.91 -0.02 4.07 16 18 C 0.05 2.70 5.50 84.86 0.47 3.17 16 19 N -0.91 -53.76 13.97 21.65 0.30 -53.46 16 20 Si 0.91 42.41 27.74 68.60 1.90 44.32 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.23 -10.54 6.74 99.48 0.67 -9.87 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 N -0.49 -17.21 11.55 -303.21 -3.50 -20.72 16 25 H 0.07 1.23 4.81 -2.38 -0.01 1.22 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.18 5.51 -2.39 -0.01 1.17 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 31 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 1.43 6.43 -2.39 -0.02 1.41 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.12 4.37 8.14 -2.40 -0.02 4.35 16 37 H 0.13 4.18 8.14 -2.39 -0.02 4.16 16 38 H 0.28 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -62.23 314.87 3.29 -58.94 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.02 Total: 9.66 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.39 Total: -19.60 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.78 Total: -87.15 kcal Atomic # 8 Polarization: 2.27 SS G_CDS: 0.85 Total: 3.12 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.90 Total: 44.32 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.10 Total: -9.28 kcal Total: -62.23 3.29 -58.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273856758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.894 kcal (2) G-P(sol) polarization free energy of solvation -62.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds