Wall clock time and date at job start Tue Mar 31 2020 05:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47290 * 302.95416 * 3 2 1 5 5 C 1.53000 * 109.46856 * 182.95467 * 3 2 1 6 6 N 1.46498 * 109.47296 * 62.95274 * 3 2 1 7 7 C 1.46501 * 120.00218 * 243.93210 * 6 3 2 8 8 C 1.50698 * 109.47123 * 262.86273 * 7 6 3 9 9 H 1.08004 * 119.99897 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00108 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00291 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99668 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47099 * 90.00434 * 12 10 8 14 14 H 1.48497 * 109.47219 * 210.00159 * 12 10 8 15 15 H 1.48506 * 109.47514 * 330.00278 * 12 10 8 16 16 C 1.34781 * 119.99804 * 63.93311 * 6 3 2 17 17 O 1.21683 * 120.00152 * 2.11605 * 16 6 3 18 18 C 1.46679 * 120.00032 * 182.11134 * 16 6 3 19 19 C 1.35666 * 126.13213 * 171.88129 * 18 16 6 20 20 N 1.30940 * 114.19220 * 180.02562 * 19 18 16 21 21 C 1.29437 * 117.36541 * 0.02562 * 20 19 18 22 22 S 1.70957 * 110.38912 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.46911 * 60.00249 * 1 2 3 24 24 H 1.08997 * 109.46980 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47212 * 300.00701 * 1 2 3 26 26 H 1.08994 * 109.46923 * 239.99764 * 2 1 3 27 27 H 1.08996 * 109.46798 * 119.99611 * 2 1 3 28 28 H 1.08997 * 109.47274 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47233 * 300.00128 * 4 3 2 30 30 H 1.09002 * 109.46878 * 60.00058 * 4 3 2 31 31 H 1.09001 * 109.47285 * 305.47672 * 5 3 2 32 32 H 1.08999 * 109.47278 * 65.48392 * 5 3 2 33 33 H 1.09007 * 109.46716 * 185.47789 * 5 3 2 34 34 H 1.08997 * 109.46698 * 22.86577 * 7 6 3 35 35 H 1.09000 * 109.46745 * 142.86307 * 7 6 3 36 36 H 0.96993 * 120.00092 * 180.02562 * 11 10 8 37 37 H 1.07997 * 122.90155 * 0.06257 * 19 18 16 38 38 H 1.08000 * 124.80339 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4703 2.1849 -1.2104 5 6 3.5682 1.4431 -0.0744 6 7 1.6107 2.1123 1.2301 7 6 0.6939 3.2529 1.1615 8 6 1.4828 4.5356 1.2196 9 1 2.5593 4.5043 1.3001 10 6 0.8301 5.7492 1.1711 11 7 1.5184 6.8686 1.2223 12 14 -1.0320 5.8033 1.0326 13 1 -1.6292 5.8176 2.3922 14 1 -1.4385 7.0295 0.3005 15 1 -1.5086 4.6056 0.2952 16 6 2.0591 1.6791 2.4250 17 8 2.8506 0.7564 2.4798 18 6 1.5933 2.3199 3.6595 19 6 1.8373 1.8929 4.9238 20 7 1.3068 2.6442 5.8558 21 6 0.6294 3.6784 5.4723 22 16 0.6153 3.7819 3.7660 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8332 3.2127 -1.2102 29 1 1.7897 1.6866 -2.1257 30 1 0.3815 2.1844 -1.1574 31 1 3.9716 0.8325 0.7335 32 1 3.8855 1.0329 -1.0331 33 1 3.9363 2.4644 0.0235 34 1 0.1336 3.2129 0.2274 35 1 0.0016 3.2137 2.0025 36 1 1.0592 7.7223 1.1886 37 1 2.4194 1.0099 5.1427 38 1 0.1428 4.3774 6.1364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276311350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:19 Heat of formation + Delta-G solvation = 17.173015 kcal Electronic energy + Delta-G solvation = -21510.646916 eV Core-core repulsion = 18480.644161 eV Total energy + Delta-G solvation = -3030.002755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98297 -38.71880 -36.36292 -34.11935 -32.35583 -30.33188 -29.40189 -28.48315 -26.65725 -25.30047 -23.29230 -22.56853 -21.72658 -19.12723 -18.68380 -17.37994 -17.05223 -16.04785 -15.57385 -14.98368 -14.73614 -14.29038 -14.14626 -13.66591 -13.37234 -13.20324 -13.07796 -12.83688 -12.64873 -12.27390 -11.97175 -11.66947 -11.56609 -11.33186 -11.24030 -10.91078 -10.69595 -10.59773 -10.44968 -10.36090 -10.28605 -9.81967 -9.16725 -9.08429 -8.69708 -8.65173 -8.27524 -7.79601 -6.45268 -4.41936 0.98209 2.06966 2.51442 2.99442 3.08236 3.12438 3.14554 3.63769 3.90079 4.04342 4.84386 4.90183 5.05949 5.26518 5.37734 5.50235 5.61156 5.77589 5.84129 5.89005 5.97166 6.03244 6.06523 6.14775 6.21670 6.27199 6.36670 6.43730 6.51940 6.55748 6.71177 6.80322 6.83677 7.12773 7.29218 7.94157 8.17480 8.30965 8.61655 8.80773 9.10086 10.65568 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.010871 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.247007 B = 2575.063843 C = 3881.814585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.183 3.817 4 C -0.156 4.156 5 C -0.161 4.161 6 N -0.577 5.577 7 C 0.191 3.809 8 C -0.531 4.531 9 H 0.087 0.913 10 C 0.090 3.910 11 N -0.871 5.871 12 Si 0.844 3.156 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.258 1.258 16 C 0.600 3.400 17 O -0.553 6.553 18 C -0.304 4.304 19 C 0.088 3.912 20 N -0.495 5.495 21 C -0.084 4.084 22 S 0.329 5.671 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.271 0.729 37 H 0.173 0.827 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -6.864 -1.745 8.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.099 3.901 4 C -0.213 4.213 5 C -0.219 4.219 6 N -0.308 5.308 7 C 0.068 3.932 8 C -0.572 4.572 9 H 0.105 0.895 10 C -0.117 4.117 11 N -0.506 5.506 12 Si 0.669 3.331 13 H -0.187 1.187 14 H -0.201 1.201 15 H -0.182 1.182 16 C 0.388 3.612 17 O -0.435 6.435 18 C -0.430 4.430 19 C -0.073 4.073 20 N -0.210 5.210 21 C -0.374 4.374 22 S 0.592 5.408 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.190 0.810 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.455 -6.416 -1.779 8.011 hybrid contribution -0.475 -0.208 0.243 0.573 sum -4.930 -6.624 -1.536 8.399 Atomic orbital electron populations 1.21797 0.96197 1.00802 1.01956 1.21934 0.95872 0.96490 1.02856 1.20245 0.94589 0.91297 0.84004 1.22211 1.01235 1.02135 0.95734 1.22225 0.94598 1.03094 1.02019 1.47841 1.46525 1.31815 1.04589 1.20207 0.90043 0.85353 0.97594 1.21389 0.96338 0.88153 1.51358 0.89541 1.24810 0.97779 0.95351 0.93799 1.69856 1.36026 0.97774 1.46953 0.87271 0.86548 0.79233 0.80046 1.18707 1.20079 1.18242 1.16703 0.80450 0.82051 0.81955 1.90662 1.35280 1.30583 1.86928 1.25855 1.14085 1.04021 0.99032 1.21909 0.99337 0.99990 0.86055 1.66304 1.11665 1.05378 1.37633 1.29470 1.02983 0.99484 1.05483 1.85980 1.40433 1.17902 0.96464 0.92616 0.93368 0.92819 0.91671 0.90336 0.90094 0.92230 0.91926 0.90262 0.92829 0.92139 0.92396 0.95771 0.91850 0.81027 0.80086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.35 37.16 0.35 -1.76 16 2 C -0.13 -2.03 4.89 -26.73 -0.13 -2.16 16 3 C 0.18 3.12 0.73 -131.82 -0.10 3.02 16 4 C -0.16 -2.44 6.79 37.16 0.25 -2.18 16 5 C -0.16 -2.77 8.22 37.16 0.31 -2.46 16 6 N -0.58 -11.29 1.79 -161.71 -0.29 -11.58 16 7 C 0.19 3.90 3.17 -5.19 -0.02 3.89 16 8 C -0.53 -12.52 7.26 -34.44 -0.25 -12.77 16 9 H 0.09 2.36 8.06 -52.48 -0.42 1.94 16 10 C 0.09 2.16 5.12 -17.82 -0.09 2.07 16 11 N -0.87 -22.92 13.96 55.43 0.77 -22.15 16 12 Si 0.84 17.56 26.82 -169.99 -4.56 13.00 16 13 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.26 -5.06 6.54 56.52 0.37 -4.69 16 16 C 0.60 12.51 6.98 -12.85 -0.09 12.42 16 17 O -0.55 -12.00 13.16 5.20 0.07 -11.94 16 18 C -0.30 -6.18 6.24 -37.10 -0.23 -6.41 16 19 C 0.09 1.71 11.10 -18.85 -0.21 1.50 16 20 N -0.49 -9.49 10.51 -15.38 -0.16 -9.65 16 21 C -0.08 -1.49 12.22 51.75 0.63 -0.86 16 22 S 0.33 6.39 15.61 -107.50 -1.68 4.71 16 23 H 0.05 0.72 6.37 -51.93 -0.33 0.39 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.83 7.69 -51.93 -0.40 0.44 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.35 6.46 -51.93 -0.34 1.01 16 28 H 0.08 1.44 7.55 -51.93 -0.39 1.04 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.95 4.99 -51.93 -0.26 0.69 16 31 H 0.08 1.48 6.03 -51.93 -0.31 1.16 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 34 H 0.06 1.15 4.56 -51.93 -0.24 0.91 16 35 H 0.03 0.51 3.91 -22.70 -0.09 0.42 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.17 3.06 8.06 -52.49 -0.42 2.63 16 38 H 0.18 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -26.70 305.45 -5.73 -32.43 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.90 Total: 6.28 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 0.42 Total: -5.70 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.32 Total: -43.38 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -4.56 Total: 13.00 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -1.68 Total: 4.71 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.70 -5.73 -32.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276311350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.599 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds