Wall clock time and date at job start Tue Mar 31 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47290 * 302.95416 * 3 2 1 5 5 C 1.53000 * 109.46856 * 182.95467 * 3 2 1 6 6 N 1.46498 * 109.47296 * 62.95274 * 3 2 1 7 7 C 1.46501 * 120.00218 * 243.93210 * 6 3 2 8 8 C 1.50698 * 109.47123 * 262.86273 * 7 6 3 9 9 H 1.08004 * 119.99897 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00108 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00291 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99668 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47099 * 90.00434 * 12 10 8 14 14 H 1.48497 * 109.47219 * 210.00159 * 12 10 8 15 15 H 1.48506 * 109.47514 * 330.00278 * 12 10 8 16 16 C 1.34781 * 119.99804 * 63.93311 * 6 3 2 17 17 O 1.21683 * 120.00152 * 2.11605 * 16 6 3 18 18 C 1.46679 * 120.00032 * 182.11134 * 16 6 3 19 19 C 1.35666 * 126.13213 * 171.88129 * 18 16 6 20 20 N 1.30940 * 114.19220 * 180.02562 * 19 18 16 21 21 C 1.29437 * 117.36541 * 0.02562 * 20 19 18 22 22 S 1.70957 * 110.38912 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.46911 * 60.00249 * 1 2 3 24 24 H 1.08997 * 109.46980 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47212 * 300.00701 * 1 2 3 26 26 H 1.08994 * 109.46923 * 239.99764 * 2 1 3 27 27 H 1.08996 * 109.46798 * 119.99611 * 2 1 3 28 28 H 1.08997 * 109.47274 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47233 * 300.00128 * 4 3 2 30 30 H 1.09002 * 109.46878 * 60.00058 * 4 3 2 31 31 H 1.09001 * 109.47285 * 305.47672 * 5 3 2 32 32 H 1.08999 * 109.47278 * 65.48392 * 5 3 2 33 33 H 1.09007 * 109.46716 * 185.47789 * 5 3 2 34 34 H 1.08997 * 109.46698 * 22.86577 * 7 6 3 35 35 H 1.09000 * 109.46745 * 142.86307 * 7 6 3 36 36 H 0.96993 * 120.00092 * 180.02562 * 11 10 8 37 37 H 1.07997 * 122.90155 * 0.06257 * 19 18 16 38 38 H 1.08000 * 124.80339 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4703 2.1849 -1.2104 5 6 3.5682 1.4431 -0.0744 6 7 1.6107 2.1123 1.2301 7 6 0.6939 3.2529 1.1615 8 6 1.4828 4.5356 1.2196 9 1 2.5593 4.5043 1.3001 10 6 0.8301 5.7492 1.1711 11 7 1.5184 6.8686 1.2223 12 14 -1.0320 5.8033 1.0326 13 1 -1.6292 5.8176 2.3922 14 1 -1.4385 7.0295 0.3005 15 1 -1.5086 4.6056 0.2952 16 6 2.0591 1.6791 2.4250 17 8 2.8506 0.7564 2.4798 18 6 1.5933 2.3199 3.6595 19 6 1.8373 1.8929 4.9238 20 7 1.3068 2.6442 5.8558 21 6 0.6294 3.6784 5.4723 22 16 0.6153 3.7819 3.7660 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8332 3.2127 -1.2102 29 1 1.7897 1.6866 -2.1257 30 1 0.3815 2.1844 -1.1574 31 1 3.9716 0.8325 0.7335 32 1 3.8855 1.0329 -1.0331 33 1 3.9363 2.4644 0.0235 34 1 0.1336 3.2129 0.2274 35 1 0.0016 3.2137 2.0025 36 1 1.0592 7.7223 1.1886 37 1 2.4194 1.0099 5.1427 38 1 0.1428 4.3774 6.1364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276311350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:18 Heat of formation + Delta-G solvation = 1.385838 kcal Electronic energy + Delta-G solvation = -21511.331500 eV Core-core repulsion = 18480.644161 eV Total energy + Delta-G solvation = -3030.687339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50542 -40.23405 -37.88164 -35.73123 -34.08082 -31.63621 -30.88132 -30.11525 -28.09229 -26.81458 -24.67661 -24.16305 -23.21147 -20.59153 -20.18854 -19.17848 -18.65398 -17.56089 -17.12088 -16.56453 -16.16074 -15.80653 -15.64920 -15.03624 -14.88458 -14.71753 -14.65559 -14.35562 -14.05243 -13.81479 -13.45530 -12.97234 -12.85398 -12.79287 -12.65235 -12.44878 -12.14162 -12.09453 -11.88950 -11.80761 -11.65949 -11.52721 -10.92850 -10.62793 -10.25909 -10.21878 -9.85066 -9.36245 -8.31028 -6.32693 -0.53818 0.51993 0.99199 1.37636 1.42783 1.48471 1.59484 2.13366 2.31348 2.32598 3.02942 3.45294 3.66645 3.97971 4.05175 4.15672 4.37363 4.38064 4.45447 4.49836 4.62056 4.65319 4.76565 4.81982 4.87622 4.94727 5.08300 5.17094 5.21361 5.21554 5.30447 5.34715 5.43855 5.54094 5.81505 6.15382 6.51427 6.66875 6.77694 7.17647 7.27544 8.83903 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.010871 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.247007 B = 2575.063843 C = 3881.814585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.170 3.830 4 C -0.150 4.150 5 C -0.155 4.155 6 N -0.577 5.577 7 C 0.198 3.802 8 C -0.523 4.523 9 H 0.035 0.965 10 C 0.050 3.950 11 N -0.923 5.923 12 Si 0.889 3.111 13 H -0.243 1.243 14 H -0.281 1.281 15 H -0.235 1.235 16 C 0.592 3.408 17 O -0.569 6.569 18 C -0.326 4.326 19 C 0.092 3.908 20 N -0.506 5.506 21 C -0.058 4.058 22 S 0.304 5.696 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.033 0.967 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.271 0.729 37 H 0.183 0.817 38 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 -8.046 -2.038 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.086 3.914 4 C -0.207 4.207 5 C -0.213 4.213 6 N -0.306 5.306 7 C 0.074 3.926 8 C -0.564 4.564 9 H 0.053 0.947 10 C -0.153 4.153 11 N -0.561 5.561 12 Si 0.710 3.290 13 H -0.167 1.167 14 H -0.206 1.206 15 H -0.157 1.157 16 C 0.381 3.619 17 O -0.452 6.452 18 C -0.451 4.451 19 C -0.069 4.069 20 N -0.221 5.221 21 C -0.349 4.349 22 S 0.565 5.435 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.200 0.800 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.549 -7.627 -2.101 10.269 hybrid contribution 0.287 0.117 0.437 0.536 sum -6.262 -7.509 -1.663 9.918 Atomic orbital electron populations 1.21782 0.95019 1.01995 1.01662 1.21863 0.96844 0.94659 1.03034 1.20597 0.94426 0.92759 0.83569 1.22167 1.01570 1.00598 0.96361 1.22156 0.95041 1.01033 1.03043 1.47937 1.46091 1.31419 1.05199 1.20088 0.89902 0.84054 0.98516 1.21233 0.94018 0.89935 1.51200 0.94669 1.25430 1.02082 0.94561 0.93190 1.69996 1.38121 0.98533 1.49409 0.86530 0.81273 0.79847 0.81313 1.16660 1.20630 1.15736 1.16896 0.80433 0.82051 0.82570 1.90643 1.35984 1.31349 1.87267 1.25923 1.15180 1.04713 0.99297 1.22158 0.98734 1.00159 0.85828 1.66386 1.12346 1.05987 1.37361 1.29986 1.01186 0.98972 1.04713 1.85889 1.41075 1.18181 0.98313 0.91162 0.91515 0.94759 0.88976 0.92609 0.92872 0.89003 0.91081 0.92101 0.89650 0.94990 0.91031 0.94764 0.91910 0.79994 0.76251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.35 71.98 0.67 -3.05 16 2 C -0.13 -3.57 4.89 30.60 0.15 -3.42 16 3 C 0.17 5.64 0.73 3.60 0.00 5.64 16 4 C -0.15 -4.40 6.79 71.98 0.49 -3.91 16 5 C -0.15 -5.32 8.22 71.98 0.59 -4.73 16 6 N -0.58 -22.59 1.79 -783.74 -1.40 -23.99 16 7 C 0.20 7.98 3.17 85.63 0.27 8.25 16 8 C -0.52 -25.28 7.26 25.60 0.19 -25.09 16 9 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 10 C 0.05 2.43 5.12 84.66 0.43 2.86 16 11 N -0.92 -50.04 13.96 21.45 0.30 -49.74 16 12 Si 0.89 34.90 26.82 68.60 1.84 36.74 16 13 H -0.24 -8.75 7.11 99.48 0.71 -8.04 16 14 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 15 H -0.23 -8.25 6.54 99.48 0.65 -7.60 16 16 C 0.59 24.97 6.98 86.45 0.60 25.58 16 17 O -0.57 -25.15 13.16 -4.29 -0.06 -25.21 16 18 C -0.33 -13.20 6.24 23.88 0.15 -13.05 16 19 C 0.09 3.50 11.10 84.23 0.93 4.44 16 20 N -0.51 -18.47 10.51 -202.56 -2.13 -20.60 16 21 C -0.06 -1.92 12.22 130.60 1.60 -0.33 16 22 S 0.30 11.48 15.61 -56.49 -0.88 10.60 16 23 H 0.07 1.56 6.37 -2.38 -0.02 1.55 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.03 0.99 7.69 -2.39 -0.02 0.97 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 1.86 6.46 -2.39 -0.02 1.84 16 28 H 0.05 1.86 7.55 -2.39 -0.02 1.84 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 1.95 4.99 -2.39 -0.01 1.94 16 31 H 0.06 2.31 6.03 -2.39 -0.01 2.29 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 2.71 4.56 -2.39 -0.01 2.69 16 35 H 0.04 1.38 3.91 -20.97 -0.08 1.30 16 36 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 37 H 0.18 6.38 8.06 -2.91 -0.02 6.36 16 38 H 0.22 5.42 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -59.56 305.45 4.69 -54.87 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.94 Total: 24.16 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 6.08 Total: -6.82 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -3.23 Total: -94.33 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 1.84 Total: 36.74 kcal Atomic # 16 Polarization: 11.48 SS G_CDS: -0.88 Total: 10.60 kcal Total: -59.56 4.69 -54.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276311350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.258 kcal (2) G-P(sol) polarization free energy of solvation -59.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds