Wall clock time and date at job start Tue Mar 31 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.33636 * 122.74633 * 124.73779 * 3 2 1 5 5 S 1.76201 * 107.92309 * 179.97438 * 4 3 2 6 6 C 1.70973 * 90.28082 * 0.27020 * 5 4 3 7 7 C 1.50705 * 124.91435 * 179.83684 * 6 5 4 8 8 C 1.50693 * 109.47261 * 270.00211 * 7 6 5 9 9 O 1.21280 * 120.00204 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00032 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99847 * 0.02562 * 10 8 7 12 12 C 1.53003 * 109.47081 * 89.99754 * 11 10 8 13 13 C 1.46504 * 120.00421 * 180.02562 * 10 8 7 14 14 C 1.50692 * 109.46990 * 90.00047 * 13 10 8 15 15 H 1.07996 * 120.00485 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99933 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99946 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00200 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46864 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47237 * 119.99583 * 18 16 14 21 21 H 1.48507 * 109.46711 * 240.00051 * 18 16 14 22 22 N 1.29021 * 110.16973 * 359.84427 * 6 5 4 23 23 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 25 25 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 27 27 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 28 28 H 1.08004 * 126.03886 * 0.02896 * 4 3 2 29 29 H 1.08998 * 109.47135 * 30.00603 * 7 6 5 30 30 H 1.09005 * 109.46463 * 150.00141 * 7 6 5 31 31 H 1.08996 * 109.46974 * 209.99764 * 11 10 8 32 32 H 1.08999 * 109.47295 * 329.99649 * 11 10 8 33 33 H 1.08996 * 109.47225 * 299.99857 * 12 11 10 34 34 H 1.08998 * 109.46837 * 60.00251 * 12 11 10 35 35 H 1.09001 * 109.47146 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47536 * 210.00475 * 13 10 8 37 37 H 1.09000 * 109.46937 * 330.00024 * 13 10 8 38 38 H 0.97002 * 120.00126 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8771 1.8890 0.9237 5 16 3.2032 3.5803 0.5528 6 6 2.1650 3.4920 -0.8027 7 6 1.8709 4.6350 -1.7399 8 6 0.6754 5.4023 -1.2368 9 8 0.1174 5.0555 -0.2174 10 7 0.2270 6.4745 -1.9192 11 6 0.9014 6.8938 -3.1503 12 6 0.2639 6.1857 -4.3475 13 6 -0.9349 7.2208 -1.4299 14 6 -0.4742 8.3177 -0.5051 15 1 0.5787 8.4465 -0.3024 16 6 -1.3969 9.1571 0.0823 17 7 -2.6791 9.0007 -0.1649 18 14 -0.8258 10.5174 1.2282 19 1 0.6546 10.4819 1.3393 20 1 -1.2505 11.8327 0.6853 21 1 -1.4275 10.3184 2.5712 22 7 1.6696 2.3053 -0.9071 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.2881 1.3291 1.7508 29 1 2.7348 5.2980 -1.7866 30 1 1.6590 4.2436 -2.7349 31 1 0.8008 7.9724 -3.2704 32 1 1.9578 6.6315 -3.0933 33 1 0.3645 5.1070 -4.2275 34 1 -0.7925 6.4480 -4.4045 35 1 0.7660 6.4973 -5.2635 36 1 -1.4683 7.6574 -2.2742 37 1 -1.5993 6.5458 -0.8903 38 1 -3.3283 9.5914 0.2481 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279141326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:04 Heat of formation + Delta-G solvation = -3.887671 kcal Electronic energy + Delta-G solvation = -19872.082206 eV Core-core repulsion = 16841.166190 eV Total energy + Delta-G solvation = -3030.916015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95704 -38.89124 -35.33454 -33.86095 -32.82418 -31.18349 -30.08151 -28.64182 -26.85554 -24.55639 -23.22488 -22.97985 -21.77060 -19.57098 -18.48490 -17.35254 -16.62804 -16.31878 -15.79523 -15.08826 -14.77301 -14.66201 -14.16587 -13.81560 -13.67030 -13.38924 -13.03995 -12.85363 -12.49644 -12.38056 -12.02370 -11.80894 -11.77087 -11.49121 -11.21098 -11.18815 -10.89528 -10.85226 -10.72762 -10.54002 -10.13307 -9.62061 -9.49470 -9.29818 -8.95456 -8.52411 -8.43496 -7.68247 -6.04235 -4.08926 0.84716 1.53405 1.90707 2.90356 3.29661 3.35029 3.38235 3.42500 3.87152 4.18826 4.45231 4.84813 4.99204 5.08505 5.22835 5.25744 5.29772 5.30863 5.35814 5.49606 5.58571 5.65366 5.69168 5.81194 5.84568 6.03709 6.09396 6.23319 6.23942 6.39111 6.49977 7.05485 7.45155 7.53469 7.91453 7.92336 8.23401 8.38312 8.89296 9.05861 9.56168 11.03930 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.004606 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.653487 B = 6077.356982 C = 6494.209886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C 0.073 3.927 4 C -0.272 4.272 5 S 0.129 5.871 6 C 0.086 3.914 7 C -0.072 4.072 8 C 0.512 3.488 9 O -0.530 6.530 10 N -0.595 5.595 11 C 0.104 3.896 12 C -0.171 4.171 13 C 0.247 3.753 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 N -0.465 5.465 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.173 0.827 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.313 -12.919 -4.451 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.060 4.060 4 C -0.411 4.411 5 S 0.386 5.614 6 C -0.192 4.192 7 C -0.115 4.115 8 C 0.296 3.704 9 O -0.407 6.407 10 N -0.327 5.327 11 C -0.020 4.020 12 C -0.229 4.229 13 C 0.128 3.872 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 N -0.179 5.179 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.190 0.810 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.087 -12.306 -3.842 17.671 hybrid contribution -0.091 0.072 0.672 0.682 sum 11.996 -12.233 -3.170 17.424 Atomic orbital electron populations 1.21677 0.94169 1.01295 1.03166 1.20099 0.96815 0.89017 1.02502 1.20219 0.96827 0.97374 0.91573 1.26759 1.09339 0.97842 1.07171 1.83911 1.43858 1.08824 1.24847 1.26208 0.98256 0.95723 0.99058 1.20432 0.99721 0.92764 0.98593 1.19850 0.84872 0.81080 0.84602 1.90709 1.58345 1.67536 1.24071 1.48223 1.32592 1.28157 1.23739 1.21458 0.95521 1.00716 0.84276 1.22234 1.02227 1.00587 0.97849 1.19285 0.82293 0.90848 0.94772 1.21465 0.93558 1.13853 1.27561 0.92391 1.24934 0.94761 0.97818 0.96583 1.69943 1.00592 1.38708 1.44099 0.86456 0.78852 0.81463 0.80736 1.19780 1.20959 1.20898 1.65963 1.23483 1.00783 1.27704 0.92662 0.91605 0.92543 0.90471 0.90624 0.80978 0.87348 0.86512 0.89742 0.91731 0.92934 0.91970 0.92089 0.94892 0.93896 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.81 37.16 0.36 -1.37 16 2 C -0.04 -0.49 6.43 -27.88 -0.18 -0.67 16 3 C 0.07 1.05 6.08 -84.22 -0.51 0.54 16 4 C -0.27 -3.57 11.07 29.12 0.32 -3.25 16 5 S 0.13 1.86 23.18 -107.50 -2.49 -0.63 16 6 C 0.09 1.42 5.88 -13.46 -0.08 1.34 16 7 C -0.07 -1.10 4.83 -29.04 -0.14 -1.24 16 8 C 0.51 10.72 7.67 -10.99 -0.08 10.63 16 9 O -0.53 -13.65 15.61 5.56 0.09 -13.57 16 10 N -0.59 -12.42 2.46 -175.06 -0.43 -12.85 16 11 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 12 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 13 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 14 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 22 N -0.46 -7.83 10.34 -8.06 -0.08 -7.91 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.66 8.03 -51.93 -0.42 0.25 16 28 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.11 1.34 7.40 -51.93 -0.38 0.95 16 30 H 0.12 1.55 7.19 -51.93 -0.37 1.18 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -34.33 336.49 -8.14 -42.47 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.61 Total: -2.09 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -0.40 Total: -1.39 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.22 Total: -46.70 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.49 Total: -0.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.33 -8.14 -42.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279141326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.585 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds