Wall clock time and date at job start Tue Mar 31 2020 05:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.76201 * 126.03732 * 2 1 4 4 C 1.70972 * 90.28385 * 180.02562 * 3 2 1 5 5 C 1.50698 * 124.91750 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46977 * 269.69267 * 5 4 3 7 7 O 1.21288 * 119.99676 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99993 * 179.72262 * 6 5 4 9 9 C 1.46502 * 120.00192 * 0.27596 * 8 6 5 10 10 C 1.37101 * 119.99950 * 180.27512 * 8 6 5 11 11 H 1.08001 * 119.99851 * 24.42330 * 10 8 6 12 12 C 1.38951 * 119.99658 * 204.41907 * 10 8 6 13 13 N 1.31403 * 120.00382 * 12.60497 * 12 10 8 14 14 Si 1.86800 * 119.99651 * 192.60440 * 12 10 8 15 15 H 1.48508 * 109.47264 * 60.00207 * 14 12 10 16 16 H 1.48497 * 109.47373 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47497 * 300.00457 * 14 12 10 18 18 N 1.29026 * 110.16621 * 359.70920 * 4 3 2 19 19 C 1.31780 * 117.12887 * 0.23001 * 18 4 3 20 20 C 1.50704 * 122.75311 * 180.02562 * 19 18 4 21 21 C 1.52999 * 109.46560 * 299.97342 * 20 19 18 22 22 C 1.52998 * 109.46867 * 59.97463 * 20 19 18 23 23 H 1.09002 * 109.47516 * 270.25530 * 1 2 3 24 24 H 1.08992 * 109.47311 * 30.26218 * 1 2 3 25 25 H 1.09008 * 109.46540 * 150.26051 * 1 2 3 26 26 H 1.09004 * 109.47288 * 149.69355 * 5 4 3 27 27 H 1.09005 * 109.47352 * 29.69034 * 5 4 3 28 28 H 1.09003 * 109.47173 * 85.83358 * 9 8 6 29 29 H 1.09002 * 109.47473 * 205.83427 * 9 8 6 30 30 H 1.09002 * 109.46929 * 325.83293 * 9 8 6 31 31 H 0.96997 * 120.00219 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.46981 * 179.97438 * 20 19 18 33 33 H 1.08998 * 109.47146 * 60.00501 * 21 20 19 34 34 H 1.09010 * 109.46628 * 179.97438 * 21 20 19 35 35 H 1.08998 * 109.47397 * 299.99904 * 21 20 19 36 36 H 1.09004 * 109.47408 * 60.00461 * 22 20 19 37 37 H 1.08998 * 109.46600 * 180.02562 * 22 20 19 38 38 H 1.08993 * 109.47281 * 299.99572 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5436 1.4248 0.0000 4 6 3.9311 0.4258 -0.0008 5 6 5.3531 0.9246 -0.0017 6 6 5.8288 1.0836 -1.4229 7 8 5.0859 0.8183 -2.3442 8 7 7.0775 1.5262 -1.6700 9 6 7.9746 1.8471 -0.5571 10 6 7.5083 1.6761 -2.9629 11 1 6.7919 1.8305 -3.7563 12 6 8.8665 1.6296 -3.2524 13 7 9.7169 1.2004 -2.3473 14 14 9.4834 2.1773 -4.9284 15 1 9.1179 3.5996 -5.1499 16 1 10.9601 2.0308 -4.9844 17 1 8.8627 1.3366 -5.9834 18 7 3.5844 -0.8170 0.0052 19 6 2.2932 -1.0806 0.0058 20 6 1.7480 -2.4856 0.0130 21 6 2.2362 -3.2283 -1.2323 22 6 2.2356 -3.2154 1.2662 23 1 -0.3634 0.0046 1.0276 24 1 -0.3633 0.8875 -0.5179 25 1 -0.3633 -0.8924 -0.5098 26 1 5.9900 0.2077 0.5166 27 1 5.4009 1.8874 0.5072 28 1 8.4865 0.9419 -0.2304 29 1 8.7100 2.5825 -0.8836 30 1 7.3949 2.2557 0.2706 31 1 10.6651 1.1683 -2.5493 32 1 0.6585 -2.4524 0.0126 33 1 3.3257 -3.2614 -1.2319 34 1 1.8422 -4.2447 -1.2269 35 1 1.8888 -2.7083 -2.1251 36 1 1.8878 -2.6862 2.1534 37 1 1.8416 -4.2316 1.2711 38 1 3.3250 -3.2485 1.2665 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279333317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:04 Heat of formation + Delta-G solvation = -0.722457 kcal Electronic energy + Delta-G solvation = -19962.035850 eV Core-core repulsion = 16931.257089 eV Total energy + Delta-G solvation = -3030.778761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90612 -38.37136 -35.13003 -34.53233 -32.43065 -31.68849 -30.10561 -27.02445 -26.42563 -25.73103 -24.36478 -23.27776 -21.47094 -19.04124 -18.43499 -17.11847 -16.88258 -16.12095 -15.44255 -14.82794 -14.47268 -14.25968 -14.07710 -13.98938 -13.42476 -13.02102 -12.96745 -12.73238 -12.59140 -12.12099 -12.00688 -11.95404 -11.80285 -11.46429 -11.26014 -11.17823 -11.04515 -10.84806 -10.75472 -10.53434 -10.39875 -10.25800 -9.20672 -9.00071 -8.85454 -8.51913 -8.17512 -7.66339 -6.31944 -3.88379 1.04476 1.68506 2.09504 3.13043 3.19625 3.25228 3.29606 3.87131 4.13408 4.35527 4.86800 4.93749 5.01895 5.11655 5.18022 5.26012 5.27509 5.42401 5.49446 5.66021 5.73273 5.78852 5.81559 5.83281 5.99489 6.02017 6.05425 6.14280 6.32118 6.35075 6.45071 6.60893 6.83369 7.18493 7.57153 8.12750 8.17781 8.48249 9.18215 9.40556 9.96347 10.73069 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025173 B = 0.004267 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.056723 B = 6560.600328 C = 6803.026795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.244 4.244 3 S 0.111 5.889 4 C 0.101 3.899 5 C -0.062 4.062 6 C 0.454 3.546 7 O -0.578 6.578 8 N -0.444 5.444 9 C 0.109 3.891 10 C -0.306 4.306 11 H 0.097 0.903 12 C 0.032 3.968 13 N -0.882 5.882 14 Si 0.927 3.073 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.462 5.462 19 C 0.077 3.923 20 C -0.018 4.018 21 C -0.142 4.142 22 C -0.139 4.139 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.268 0.732 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.224 -2.289 9.065 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.365 4.365 3 S 0.368 5.632 4 C -0.178 4.178 5 C -0.106 4.106 6 C 0.240 3.760 7 O -0.462 6.462 8 N -0.163 5.163 9 C -0.034 4.034 10 C -0.434 4.434 11 H 0.115 0.885 12 C -0.172 4.172 13 N -0.521 5.521 14 Si 0.753 3.247 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.198 1.198 18 N -0.175 5.175 19 C -0.056 4.056 20 C -0.039 4.039 21 C -0.199 4.199 22 C -0.197 4.197 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.073 -1.718 8.630 15.758 hybrid contribution 0.404 -0.529 -0.763 1.013 sum -12.669 -2.247 7.867 15.081 Atomic orbital electron populations 1.20157 0.87406 1.02943 1.02235 1.25543 1.00978 0.94823 1.15137 1.83706 0.99022 1.11622 1.68803 1.26192 0.99771 0.90909 1.00934 1.20299 0.88745 1.02190 0.99353 1.19639 0.84475 0.83134 0.88788 1.90550 1.55430 1.54522 1.45727 1.43518 1.10463 1.55573 1.06780 1.21524 0.93262 1.01402 0.87262 1.19585 0.91696 1.47576 0.84502 0.88515 1.25338 0.96142 0.96395 0.99293 1.69976 1.03327 1.43956 1.34852 0.85995 0.77366 0.79321 0.81994 1.19894 1.20923 1.19803 1.65952 1.16868 1.18592 1.16063 1.19988 0.87356 0.96229 1.02012 1.19728 0.99006 0.88490 0.96661 1.21774 1.02740 0.98906 0.96502 1.21756 1.02495 0.99143 0.96266 0.91143 0.91421 0.90606 0.87227 0.88440 0.92817 0.90529 0.95597 0.92173 0.90137 0.91491 0.92595 0.92801 0.93068 0.92526 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 9.91 36.00 0.36 -0.36 16 2 C -0.24 -3.63 6.59 -35.92 -0.24 -3.87 16 3 S 0.11 1.79 23.18 -107.50 -2.49 -0.70 16 4 C 0.10 1.92 5.88 -13.46 -0.08 1.84 16 5 C -0.06 -1.19 4.89 -29.03 -0.14 -1.33 16 6 C 0.45 11.25 7.62 -10.99 -0.08 11.17 16 7 O -0.58 -16.48 15.75 5.55 0.09 -16.39 16 8 N -0.44 -11.45 3.01 -122.19 -0.37 -11.82 16 9 C 0.11 2.40 8.45 59.85 0.51 2.90 16 10 C -0.31 -8.60 9.24 -14.93 -0.14 -8.74 16 11 H 0.10 2.85 7.45 -52.49 -0.39 2.46 16 12 C 0.03 0.84 5.04 -17.47 -0.09 0.75 16 13 N -0.88 -23.61 10.83 55.50 0.60 -23.00 16 14 Si 0.93 20.91 29.57 -169.99 -5.03 15.88 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 N -0.46 -8.88 10.43 -8.06 -0.08 -8.96 16 19 C 0.08 1.25 5.31 -84.22 -0.45 0.81 16 20 C -0.02 -0.23 3.18 -91.77 -0.29 -0.52 16 21 C -0.14 -1.93 9.14 37.16 0.34 -1.59 16 22 C -0.14 -1.63 9.14 37.16 0.34 -1.29 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.71 6.82 -51.92 -0.35 0.35 16 26 H 0.11 1.98 8.11 -51.93 -0.42 1.56 16 27 H 0.10 1.55 7.40 -51.93 -0.38 1.17 16 28 H 0.05 1.21 7.83 -51.93 -0.41 0.81 16 29 H 0.08 1.77 6.80 -51.93 -0.35 1.42 16 30 H 0.03 0.45 6.60 -51.93 -0.34 0.11 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.08 0.86 6.30 -51.93 -0.33 0.54 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -32.58 329.24 -7.78 -40.36 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.50 Total: -0.11 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 0.04 Total: -0.22 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.15 Total: -43.79 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.09 Total: -16.39 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.58 -7.78 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279333317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.640 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds