Wall clock time and date at job start Tue Mar 31 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33635 * 122.75264 * 2 1 4 4 S 1.76194 * 107.92869 * 180.02562 * 3 2 1 5 5 C 1.70985 * 90.28020 * 0.02562 * 4 3 2 6 6 C 1.50702 * 124.91564 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47027 * 270.02437 * 6 5 4 8 8 C 1.52995 * 109.47156 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47444 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99712 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00212 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99847 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47136 * 34.99910 * 12 11 9 14 14 C 1.53003 * 109.46937 * 275.00212 * 12 11 9 15 15 C 1.50697 * 109.46937 * 155.00322 * 12 11 9 16 16 H 1.08001 * 120.00040 * 5.46020 * 15 12 11 17 17 C 1.37877 * 120.00057 * 185.46240 * 15 12 11 18 18 N 1.31519 * 119.99869 * 9.55495 * 17 15 12 19 19 Si 1.86794 * 119.99998 * 189.55849 * 17 15 12 20 20 H 1.48504 * 109.47413 * 84.99254 * 19 17 15 21 21 H 1.48504 * 109.47330 * 204.99188 * 19 17 15 22 22 H 1.48498 * 109.47435 * 324.99361 * 19 17 15 23 23 N 1.29028 * 110.16555 * 0.23963 * 5 4 3 24 24 H 1.08998 * 109.47381 * 89.97345 * 1 2 3 25 25 H 1.09004 * 109.47488 * 209.97805 * 1 2 3 26 26 H 1.09006 * 109.47295 * 329.97123 * 1 2 3 27 27 H 1.08001 * 126.03612 * 0.03846 * 3 2 1 28 28 H 1.09000 * 109.47134 * 150.02011 * 6 5 4 29 29 H 1.09000 * 109.47116 * 30.01994 * 6 5 4 30 30 H 1.09000 * 109.47512 * 59.99805 * 7 6 5 31 31 H 1.09000 * 109.46810 * 299.99744 * 7 6 5 32 32 H 1.09000 * 109.47361 * 59.99356 * 8 7 6 33 33 H 1.08999 * 109.47134 * 299.99797 * 8 7 6 34 34 H 0.96992 * 119.99622 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.47156 * 303.67686 * 14 12 11 36 36 H 1.08996 * 109.46715 * 63.68334 * 14 12 11 37 37 H 1.09005 * 109.46844 * 183.67940 * 14 12 11 38 38 H 0.96999 * 120.00039 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5039 -0.9820 -0.0018 6 6 4.4834 -2.1272 -0.0033 7 6 4.8144 -2.5132 -1.4464 8 6 5.8083 -3.6763 -1.4480 9 6 6.1338 -4.0570 -2.8693 10 8 5.6209 -3.4573 -3.7903 11 7 6.9950 -5.0638 -3.1170 12 6 7.3118 -5.4335 -4.4987 13 1 7.3224 -4.5385 -5.1210 14 6 6.2528 -6.4059 -5.0221 15 6 8.6659 -6.0932 -4.5443 16 1 9.1951 -6.3038 -3.6267 17 6 9.2293 -6.4277 -5.7574 18 7 8.6801 -6.0069 -6.8759 19 14 10.7727 -7.4786 -5.8124 20 1 10.3966 -8.9140 -5.7522 21 1 11.5084 -7.2122 -7.0745 22 1 11.6401 -7.1453 -4.6540 23 7 2.2198 -1.1084 -0.0066 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5143 27 1 1.8392 2.1307 0.0006 28 1 4.0435 -2.9823 0.5098 29 1 5.3961 -1.8254 0.5104 30 1 5.2543 -1.6581 -1.9595 31 1 3.9016 -2.8151 -1.9601 32 1 5.3680 -4.5313 -0.9350 33 1 6.7211 -3.3750 -0.9341 34 1 7.4048 -5.5436 -2.3804 35 1 6.1967 -7.2716 -4.3622 36 1 5.2841 -5.9072 -5.0506 37 1 6.5235 -6.7317 -6.0265 38 1 9.0762 -6.2426 -7.7294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283108670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:27 Heat of formation + Delta-G solvation = -21.028792 kcal Electronic energy + Delta-G solvation = -18883.115599 eV Core-core repulsion = 15851.456289 eV Total energy + Delta-G solvation = -3031.659310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04052 -38.89644 -35.35477 -34.53218 -32.36375 -31.92524 -29.51674 -28.15359 -27.55977 -25.21238 -23.88102 -21.80458 -20.65912 -19.86719 -19.33660 -17.84180 -17.02158 -15.72407 -15.64290 -15.39135 -15.11055 -15.00452 -14.21384 -13.99794 -13.55747 -13.24781 -13.22070 -12.81072 -12.63071 -12.35993 -12.05151 -11.86860 -11.63890 -11.48965 -11.39511 -11.02118 -10.98441 -10.75341 -10.66973 -10.34323 -10.26200 -9.77560 -9.55133 -9.10622 -8.95811 -8.81970 -8.49147 -7.88920 -6.13538 -4.19028 0.54501 1.21565 1.59659 2.61353 3.25434 3.32040 3.33364 3.46107 3.83223 4.15948 4.40083 4.68817 4.92378 4.97775 5.03548 5.12147 5.20063 5.26607 5.34893 5.43396 5.46010 5.61016 5.67862 5.70167 5.90666 6.06341 6.19732 6.38806 6.77844 6.91735 7.10529 7.46454 7.58171 7.61057 7.69286 7.87314 8.08666 8.71448 8.81549 9.18367 9.47345 10.95040 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040785 B = 0.002648 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.368064 B =10572.238283 C =10765.662206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 C -0.272 4.272 4 S 0.117 5.883 5 C 0.066 3.934 6 C -0.047 4.047 7 C -0.095 4.095 8 C -0.141 4.141 9 C 0.499 3.501 10 O -0.556 6.556 11 N -0.711 5.711 12 C 0.261 3.739 13 H 0.055 0.945 14 C -0.141 4.141 15 C -0.536 4.536 16 H 0.061 0.939 17 C 0.068 3.932 18 N -0.881 5.881 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.474 5.474 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.174 0.826 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.388 0.612 35 H 0.028 0.972 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 11.180 16.787 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.411 4.411 4 S 0.373 5.627 5 C -0.212 4.212 6 C -0.088 4.088 7 C -0.135 4.135 8 C -0.181 4.181 9 C 0.284 3.716 10 O -0.436 6.436 11 N -0.359 5.359 12 C 0.160 3.840 13 H 0.072 0.928 14 C -0.200 4.200 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.518 5.518 19 Si 0.726 3.274 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.189 5.189 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.192 0.808 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.220 0.780 35 H 0.047 0.953 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.278 11.631 15.888 22.211 hybrid contribution 0.146 -0.773 0.191 0.810 sum -10.132 10.858 16.079 21.888 Atomic orbital electron populations 1.20358 0.87196 1.03195 1.03055 1.20333 0.98294 0.86576 1.01200 1.26770 0.95242 1.03883 1.15195 1.84042 1.07331 1.03347 1.68019 1.27101 0.94047 0.98294 1.01763 1.20401 0.95230 0.93723 0.99395 1.21289 1.00123 0.98416 0.93662 1.21659 1.00722 0.99672 0.96066 1.20450 0.79867 0.80699 0.90616 1.90661 1.52669 1.53700 1.46542 1.46521 1.44059 1.33942 1.11352 1.18734 0.92941 0.95381 0.76994 0.92762 1.22011 0.97167 0.98661 1.02159 1.21179 1.02417 1.40880 0.92972 0.92092 1.24903 0.97491 0.95794 0.95422 1.69989 1.40856 1.43324 0.97655 0.86522 0.82621 0.80798 0.77508 1.20423 1.21178 1.19911 1.66133 1.04577 1.31531 1.16628 0.90556 0.90571 0.90852 0.80815 0.88586 0.89452 0.90899 0.90501 0.89263 0.89272 0.77965 0.95283 0.96185 0.90948 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.31 36.00 0.37 -0.26 16 2 C 0.07 0.76 6.74 -84.23 -0.57 0.19 16 3 C -0.27 -2.64 11.13 29.12 0.32 -2.32 16 4 S 0.12 1.18 23.18 -107.50 -2.49 -1.31 16 5 C 0.07 0.78 6.64 -13.45 -0.09 0.69 16 6 C -0.05 -0.48 5.80 -27.88 -0.16 -0.64 16 7 C -0.10 -1.25 4.49 -26.73 -0.12 -1.37 16 8 C -0.14 -1.85 5.70 -27.89 -0.16 -2.01 16 9 C 0.50 9.77 7.79 -10.99 -0.09 9.69 16 10 O -0.56 -13.39 15.65 5.55 0.09 -13.31 16 11 N -0.71 -14.68 5.07 -54.93 -0.28 -14.96 16 12 C 0.26 6.70 2.42 -69.08 -0.17 6.53 16 13 H 0.05 1.63 7.52 -51.93 -0.39 1.24 16 14 C -0.14 -3.51 9.36 37.16 0.35 -3.16 16 15 C -0.54 -14.27 8.66 -34.44 -0.30 -14.57 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 18 N -0.88 -25.31 12.16 55.43 0.67 -24.63 16 19 Si 0.90 20.67 29.55 -169.99 -5.02 15.65 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 N -0.47 -6.23 10.53 -8.06 -0.08 -6.32 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.39 6.79 8.53 -40.82 -0.35 6.45 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 1.93 6.83 -51.93 -0.35 1.58 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -32.83 338.10 -8.42 -41.25 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.70 Total: 4.01 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.70 Total: -5.48 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.31 Total: -45.91 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.83 -8.42 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283108670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.218 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds