Wall clock time and date at job start Tue Mar 31 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.33636 * 122.74633 * 124.73779 * 3 2 1 5 5 S 1.76201 * 107.92309 * 179.97438 * 4 3 2 6 6 C 1.70973 * 90.28082 * 0.27020 * 5 4 3 7 7 C 1.50705 * 124.91435 * 179.83684 * 6 5 4 8 8 C 1.50693 * 109.47261 * 270.00211 * 7 6 5 9 9 O 1.21280 * 120.00204 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00032 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00421 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47325 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46964 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.46761 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00436 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99759 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00198 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00272 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46953 * 59.99589 * 18 16 14 20 20 H 1.48496 * 109.47249 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46843 * 299.99733 * 18 16 14 22 22 N 1.29021 * 110.16973 * 359.84427 * 6 5 4 23 23 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 25 25 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 27 27 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 28 28 H 1.08004 * 126.03886 * 0.02896 * 4 3 2 29 29 H 1.08998 * 109.47135 * 30.00603 * 7 6 5 30 30 H 1.09005 * 109.46463 * 150.00141 * 7 6 5 31 31 H 0.97004 * 120.00046 * 0.02562 * 10 8 7 32 32 H 1.09007 * 109.46708 * 300.00480 * 11 10 8 33 33 H 1.09002 * 109.46873 * 59.99965 * 11 10 8 34 34 H 1.09007 * 109.47255 * 299.99699 * 12 11 10 35 35 H 1.09002 * 109.47538 * 59.99926 * 12 11 10 36 36 H 1.08998 * 109.46952 * 299.99295 * 13 12 11 37 37 H 1.08997 * 109.47117 * 60.00344 * 13 12 11 38 38 H 0.96996 * 120.00378 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8771 1.8890 0.9237 5 16 3.2032 3.5803 0.5528 6 6 2.1650 3.4920 -0.8027 7 6 1.8709 4.6350 -1.7399 8 6 0.6754 5.4023 -1.2368 9 8 0.1174 5.0555 -0.2174 10 7 0.2270 6.4745 -1.9192 11 6 -0.9349 7.2208 -1.4299 12 6 -1.2335 8.3810 -2.3814 13 6 -2.4465 9.1607 -1.8699 14 6 -2.7402 10.3040 -2.8069 15 1 -2.1237 10.4588 -3.6800 16 6 -3.7960 11.1525 -2.5494 17 7 -4.5472 10.9638 -1.4865 18 14 -4.1606 12.5692 -3.7111 19 1 -4.4511 12.0359 -5.0662 20 1 -5.3379 13.3260 -3.2147 21 1 -2.9830 13.4715 -3.7762 22 7 1.6696 2.3053 -0.9071 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.2881 1.3291 1.7508 29 1 2.7348 5.2980 -1.7866 30 1 1.6590 4.2436 -2.7349 31 1 0.6735 6.7521 -2.7344 32 1 -1.7991 6.5580 -1.3832 33 1 -0.7228 7.6118 -0.4348 34 1 -0.3694 9.0439 -2.4284 35 1 -1.4458 7.9897 -3.3763 36 1 -3.3107 8.4982 -1.8226 37 1 -2.2337 9.5522 -0.8752 38 1 -5.2902 11.5605 -1.3055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283209732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:07 Heat of formation + Delta-G solvation = -21.379654 kcal Electronic energy + Delta-G solvation = -18675.773741 eV Core-core repulsion = 15644.099216 eV Total energy + Delta-G solvation = -3031.674525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28958 -39.30457 -35.49061 -34.10743 -33.34724 -31.83649 -30.91906 -28.80875 -26.66388 -24.78047 -23.42461 -22.34830 -20.77984 -20.07604 -19.79600 -17.70038 -17.06725 -16.48097 -15.90695 -15.57679 -15.25468 -14.81246 -14.45997 -14.41211 -14.08947 -13.75102 -13.39207 -13.24437 -12.64322 -12.31536 -12.28719 -11.98554 -11.84869 -11.65166 -11.42576 -11.09346 -10.89313 -10.75107 -10.63853 -10.02284 -9.88262 -9.78271 -9.54738 -9.37975 -9.14699 -8.85027 -8.82484 -8.37957 -6.02592 -4.06000 0.53606 1.21963 1.59240 2.59054 2.68879 3.31425 3.33905 3.36440 3.38869 3.83461 4.43431 4.50202 4.76378 4.86525 4.91876 4.99521 5.10130 5.21316 5.33047 5.33726 5.43064 5.66593 5.69775 5.75603 5.88359 5.97713 6.13944 6.16882 6.43336 6.57712 6.79852 6.98111 7.60671 7.62010 7.63258 7.74662 7.95843 8.30233 8.37219 9.00518 9.58233 11.08678 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035979 B = 0.002518 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.050414 B =11118.146067 C =11456.121147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.073 3.927 4 C -0.266 4.266 5 S 0.131 5.869 6 C 0.075 3.925 7 C -0.069 4.069 8 C 0.513 3.487 9 O -0.533 6.533 10 N -0.723 5.723 11 C 0.117 3.883 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.460 5.460 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.175 0.825 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.400 0.600 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.961 -19.140 1.661 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.060 4.060 4 C -0.405 4.405 5 S 0.387 5.613 6 C -0.204 4.204 7 C -0.113 4.113 8 C 0.296 3.704 9 O -0.409 6.409 10 N -0.375 5.375 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.175 5.175 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.193 0.807 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.234 0.766 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.651 -18.611 2.530 25.775 hybrid contribution -0.395 0.172 -0.911 1.007 sum 17.256 -18.439 1.619 25.306 Atomic orbital electron populations 1.21680 0.94076 1.01534 1.03042 1.20128 0.96882 0.88842 1.02745 1.20251 0.96809 0.97464 0.91429 1.26818 1.08795 0.97742 1.07108 1.83900 1.43799 1.09108 1.24475 1.26093 0.99025 0.95815 0.99419 1.20288 0.98858 0.93038 0.99113 1.20146 0.84971 0.80801 0.84483 1.90745 1.58439 1.67300 1.24415 1.46145 1.33188 1.29740 1.28383 1.21670 0.86506 0.93620 0.98763 1.21891 1.01292 0.94956 0.97715 1.19027 0.91280 0.94382 0.96691 1.21164 1.13551 1.12082 1.09382 0.92678 1.25034 0.96142 0.97887 0.95396 1.69954 1.18488 1.38336 1.26518 0.86635 0.77759 0.82330 0.81136 1.20232 1.21269 1.20231 1.65955 1.23395 1.00686 1.27443 0.92703 0.91633 0.92355 0.90298 0.90460 0.80746 0.86689 0.85818 0.76646 0.91716 0.91696 0.92669 0.92657 0.96281 0.96282 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.81 37.16 0.36 -1.04 16 2 C -0.05 -0.40 6.43 -27.88 -0.18 -0.58 16 3 C 0.07 0.84 6.08 -84.22 -0.51 0.33 16 4 C -0.27 -2.68 11.07 29.12 0.32 -2.36 16 5 S 0.13 1.38 23.18 -107.50 -2.49 -1.11 16 6 C 0.08 0.92 5.88 -13.46 -0.08 0.84 16 7 C -0.07 -0.70 6.28 -29.04 -0.18 -0.89 16 8 C 0.51 7.33 7.82 -10.99 -0.09 7.25 16 9 O -0.53 -10.07 16.03 5.56 0.09 -9.98 16 10 N -0.72 -9.80 5.56 -60.30 -0.33 -10.14 16 11 C 0.12 2.03 5.67 -4.04 -0.02 2.00 16 12 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 N -0.46 -6.19 10.34 -8.06 -0.08 -6.27 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.51 8.03 -51.93 -0.42 0.09 16 28 H 0.18 1.24 8.06 -52.48 -0.42 0.82 16 29 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -34.25 341.36 -8.82 -43.07 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.80 Total: -1.25 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.06 Total: -9.76 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.32 Total: -42.51 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.49 Total: -1.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.25 -8.82 -43.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283209732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.691 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds