Wall clock time and date at job start Tue Mar 31 2020 05:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.33636 * 122.74633 * 124.73779 * 3 2 1 5 5 S 1.76201 * 107.92309 * 179.97438 * 4 3 2 6 6 C 1.70973 * 90.28082 * 0.27020 * 5 4 3 7 7 C 1.50705 * 124.91435 * 179.83684 * 6 5 4 8 8 C 1.50693 * 109.47261 * 270.00211 * 7 6 5 9 9 O 1.21280 * 120.00204 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00032 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00421 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47325 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46964 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.46761 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00436 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99759 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00198 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00272 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46953 * 59.99589 * 18 16 14 20 20 H 1.48496 * 109.47249 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46843 * 299.99733 * 18 16 14 22 22 N 1.29021 * 110.16973 * 359.84427 * 6 5 4 23 23 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 25 25 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 27 27 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 28 28 H 1.08004 * 126.03886 * 0.02896 * 4 3 2 29 29 H 1.08998 * 109.47135 * 30.00603 * 7 6 5 30 30 H 1.09005 * 109.46463 * 150.00141 * 7 6 5 31 31 H 0.97004 * 120.00046 * 0.02562 * 10 8 7 32 32 H 1.09007 * 109.46708 * 300.00480 * 11 10 8 33 33 H 1.09002 * 109.46873 * 59.99965 * 11 10 8 34 34 H 1.09007 * 109.47255 * 299.99699 * 12 11 10 35 35 H 1.09002 * 109.47538 * 59.99926 * 12 11 10 36 36 H 1.08998 * 109.46952 * 299.99295 * 13 12 11 37 37 H 1.08997 * 109.47117 * 60.00344 * 13 12 11 38 38 H 0.96996 * 120.00378 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8771 1.8890 0.9237 5 16 3.2032 3.5803 0.5528 6 6 2.1650 3.4920 -0.8027 7 6 1.8709 4.6350 -1.7399 8 6 0.6754 5.4023 -1.2368 9 8 0.1174 5.0555 -0.2174 10 7 0.2270 6.4745 -1.9192 11 6 -0.9349 7.2208 -1.4299 12 6 -1.2335 8.3810 -2.3814 13 6 -2.4465 9.1607 -1.8699 14 6 -2.7402 10.3040 -2.8069 15 1 -2.1237 10.4588 -3.6800 16 6 -3.7960 11.1525 -2.5494 17 7 -4.5472 10.9638 -1.4865 18 14 -4.1606 12.5692 -3.7111 19 1 -4.4511 12.0359 -5.0662 20 1 -5.3379 13.3260 -3.2147 21 1 -2.9830 13.4715 -3.7762 22 7 1.6696 2.3053 -0.9071 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.2881 1.3291 1.7508 29 1 2.7348 5.2980 -1.7866 30 1 1.6590 4.2436 -2.7349 31 1 0.6735 6.7521 -2.7344 32 1 -1.7991 6.5580 -1.3832 33 1 -0.7228 7.6118 -0.4348 34 1 -0.3694 9.0439 -2.4284 35 1 -1.4458 7.9897 -3.3763 36 1 -3.3107 8.4982 -1.8226 37 1 -2.2337 9.5522 -0.8752 38 1 -5.2902 11.5605 -1.3055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283209732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:06 Heat of formation + Delta-G solvation = -44.770667 kcal Electronic energy + Delta-G solvation = -18676.788051 eV Core-core repulsion = 15644.099216 eV Total energy + Delta-G solvation = -3032.688835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21556 -40.39817 -37.00337 -35.20052 -34.91009 -33.23780 -32.15606 -29.76121 -28.37061 -25.73024 -24.93658 -23.41040 -22.32067 -21.33693 -20.66656 -18.65917 -18.42033 -18.12212 -17.06277 -16.82251 -16.50213 -16.16012 -15.73833 -15.66094 -14.98055 -14.72715 -14.54009 -14.19155 -14.12506 -13.74354 -13.59255 -13.40906 -12.96391 -12.74371 -12.69387 -12.55281 -12.41008 -12.16403 -11.82713 -11.66481 -11.60706 -11.26773 -10.99667 -10.62769 -10.54826 -10.33134 -10.12124 -9.65228 -8.19369 -6.31159 -0.28785 0.43755 0.78663 1.41979 1.45130 1.52931 1.57372 1.72231 2.26459 2.43293 3.04394 3.14370 3.67228 3.93409 4.08394 4.18909 4.20070 4.25993 4.31653 4.38010 4.51406 4.55316 4.65057 4.66752 4.94454 4.98514 4.99611 5.15585 5.17533 5.20332 5.39906 5.41847 5.52666 5.70766 5.84267 6.21903 6.54333 6.79677 6.86633 7.22343 7.38653 8.92650 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035979 B = 0.002518 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.050414 B =11118.146067 C =11456.121147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.047 3.953 4 C -0.262 4.262 5 S 0.145 5.855 6 C 0.049 3.951 7 C -0.060 4.060 8 C 0.512 3.488 9 O -0.584 6.584 10 N -0.710 5.710 11 C 0.131 3.869 12 C -0.101 4.101 13 C 0.023 3.977 14 C -0.541 4.541 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.937 5.937 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.264 1.264 22 N -0.489 5.489 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.204 0.796 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.420 0.580 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.069 0.931 36 H -0.011 1.011 37 H -0.009 1.009 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.020 -19.354 0.293 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.400 4.400 5 S 0.401 5.599 6 C -0.229 4.229 7 C -0.103 4.103 8 C 0.297 3.703 9 O -0.464 6.464 10 N -0.362 5.362 11 C 0.006 3.994 12 C -0.139 4.139 13 C -0.015 4.015 14 C -0.579 4.579 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.189 1.189 22 N -0.204 5.204 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.221 0.779 29 H 0.172 0.828 30 H 0.163 0.837 31 H 0.258 0.742 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.753 -18.826 1.115 27.310 hybrid contribution -1.030 0.190 -0.415 1.127 sum 18.723 -18.636 0.700 26.426 Atomic orbital electron populations 1.21643 0.95096 1.02300 1.00990 1.20226 0.95891 0.87860 1.04404 1.20705 0.97607 0.98444 0.91725 1.27224 1.07946 0.97624 1.07249 1.83776 1.42986 1.09503 1.23666 1.26457 0.99784 0.96128 1.00519 1.20375 0.97984 0.92635 0.99320 1.20883 0.85487 0.80358 0.83541 1.90727 1.60272 1.68596 1.26810 1.45879 1.31993 1.29306 1.29049 1.21215 0.87403 0.92971 0.97772 1.21593 0.99048 0.95033 0.98200 1.18949 0.92932 0.94219 0.95407 1.21667 1.13703 1.12583 1.09958 0.91361 1.26047 0.96018 1.01029 0.97116 1.70110 1.19205 1.39724 1.28660 0.85459 0.77769 0.78641 0.78931 1.19006 1.21278 1.18879 1.65982 1.24122 1.01576 1.28735 0.94248 0.94100 0.90153 0.89464 0.87896 0.77936 0.82765 0.83668 0.74248 0.93743 0.93209 0.90960 0.91262 0.99232 0.99020 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.81 71.98 0.71 -2.00 16 2 C -0.04 -0.72 6.43 29.85 0.19 -0.52 16 3 C 0.05 1.04 6.08 41.52 0.25 1.29 16 4 C -0.26 -4.84 11.07 66.78 0.74 -4.10 16 5 S 0.14 2.85 23.18 -56.49 -1.31 1.54 16 6 C 0.05 1.15 5.88 88.52 0.52 1.67 16 7 C -0.06 -1.10 6.28 29.10 0.18 -0.91 16 8 C 0.51 14.18 7.82 87.66 0.69 14.86 16 9 O -0.58 -22.42 16.03 -3.03 -0.05 -22.47 16 10 N -0.71 -18.25 5.56 -463.06 -2.57 -20.83 16 11 C 0.13 4.55 5.67 86.38 0.49 5.04 16 12 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 13 C 0.02 1.18 4.97 29.85 0.15 1.32 16 14 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 16 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 17 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 18 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 N -0.49 -12.89 10.34 -179.40 -1.86 -14.74 16 23 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 1.11 8.03 -2.39 -0.02 1.09 16 28 H 0.20 2.35 8.06 -2.91 -0.02 2.32 16 29 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.15 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.42 7.40 8.47 -92.71 -0.79 6.61 16 32 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -76.74 341.36 1.57 -75.18 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.27 Total: 9.48 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 4.77 Total: -16.61 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -4.14 Total: -92.78 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -76.74 1.57 -75.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283209732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.407 kcal (2) G-P(sol) polarization free energy of solvation -76.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds