Wall clock time and date at job start Tue Mar 31 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 C 1.50703 * 109.46675 * 240.00480 * 2 1 3 5 5 S 1.70942 * 125.58980 * 54.40436 * 4 2 1 6 6 C 1.70768 * 91.13193 * 179.97438 * 5 4 2 7 7 N 1.28651 * 110.55906 * 0.34925 * 6 5 4 8 8 C 1.33567 * 115.76655 * 359.73410 * 7 6 5 9 9 C 1.47257 * 123.14344 * 180.02562 * 8 7 6 10 10 O 1.21630 * 120.00249 * 185.39670 * 9 8 7 11 11 N 1.34781 * 120.00065 * 5.39289 * 9 8 7 12 12 C 1.46503 * 120.00396 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47270 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47166 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47202 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99949 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99961 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00286 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00091 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47031 * 60.00124 * 19 17 15 21 21 H 1.48502 * 109.47309 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47215 * 300.00231 * 19 17 15 23 23 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47307 * 59.99210 * 1 2 3 25 25 H 1.09002 * 109.46255 * 299.99743 * 1 2 3 26 26 H 1.09001 * 109.47307 * 120.00790 * 2 1 3 27 27 H 1.09006 * 109.46558 * 60.00571 * 3 2 1 28 28 H 1.09000 * 109.47072 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47047 * 300.00639 * 3 2 1 30 30 H 1.07997 * 124.72457 * 180.08283 * 6 5 4 31 31 H 0.96998 * 119.99731 * 0.02562 * 11 9 8 32 32 H 1.08998 * 109.46639 * 299.99996 * 12 11 9 33 33 H 1.09003 * 109.46761 * 59.99974 * 12 11 9 34 34 H 1.09004 * 109.46987 * 299.99946 * 13 12 11 35 35 H 1.09003 * 109.47328 * 60.00225 * 13 12 11 36 36 H 1.08999 * 109.46689 * 300.00438 * 14 13 12 37 37 H 1.09003 * 109.46787 * 59.99926 * 14 13 12 38 38 H 0.97002 * 120.00145 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 16 1.6009 -0.3351 -2.8416 6 6 2.6010 -1.5850 -3.4363 7 7 3.1779 -2.2023 -2.4661 8 6 2.8925 -1.7535 -1.2409 9 6 3.4620 -2.3395 -0.0158 10 8 3.0885 -1.9512 1.0746 11 7 4.3971 -3.3062 -0.1029 12 6 4.9633 -3.8897 1.1158 13 6 5.9946 -4.9554 0.7396 14 6 6.5864 -5.5643 2.0124 15 6 7.6017 -6.6144 1.6418 16 1 7.8049 -6.8261 0.6024 17 6 8.2719 -7.3042 2.6297 18 7 8.0249 -7.0461 3.8954 19 14 9.5310 -8.6054 2.1704 20 1 10.6152 -7.9838 1.3682 21 1 10.1062 -9.1956 3.4057 22 1 8.8732 -9.6709 1.3720 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3632 0.5138 0.8901 26 1 1.8934 -0.5140 0.8899 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 2.7280 -1.8268 -4.4811 31 1 4.6952 -3.6157 -0.9725 32 1 5.4464 -3.1081 1.7022 33 1 4.1670 -4.3457 1.7041 34 1 5.5118 -5.7370 0.1529 35 1 6.7908 -4.4989 0.1515 36 1 7.0691 -4.7824 2.5987 37 1 5.7904 -6.0206 2.6009 38 1 8.4967 -7.5312 4.5904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290248298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:17 Heat of formation + Delta-G solvation = -20.749343 kcal Electronic energy + Delta-G solvation = -19204.138778 eV Core-core repulsion = 16172.491586 eV Total energy + Delta-G solvation = -3031.647192 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68167 -38.55516 -36.16275 -35.21633 -33.27486 -31.26819 -29.97184 -27.41125 -27.15773 -25.59319 -23.48097 -22.05704 -21.61584 -20.64295 -19.45100 -18.15570 -16.83770 -16.24332 -15.89195 -15.63602 -15.15830 -14.68972 -14.45469 -14.40967 -14.05238 -13.61890 -13.56147 -13.27678 -12.49382 -12.32145 -12.23614 -11.82919 -11.72714 -11.70978 -11.48502 -11.31656 -10.86878 -10.69870 -10.60015 -10.05705 -9.83985 -9.74422 -9.67565 -9.34295 -9.21117 -9.11081 -8.72391 -8.35097 -5.99977 -4.02951 0.32771 0.98864 1.40457 1.88070 3.33776 3.38090 3.38509 3.39431 3.43669 3.97446 4.43039 4.46452 4.64254 4.83858 4.90555 5.15572 5.30042 5.34057 5.35708 5.55251 5.63107 5.65566 5.78101 5.79296 5.84431 5.98943 6.16263 6.18004 6.55313 6.62164 6.85333 7.02156 7.17509 7.65247 7.75381 7.78143 7.98825 8.33515 8.40852 9.03455 9.61083 11.11327 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033305 B = 0.002918 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.505213 B = 9592.833799 C =10228.086167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.167 4.167 5 S 0.192 5.808 6 C -0.007 4.007 7 N -0.436 5.436 8 C -0.003 4.003 9 C 0.589 3.411 10 O -0.535 6.535 11 N -0.705 5.705 12 C 0.115 3.885 13 C -0.121 4.121 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.138 0.862 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.204 0.796 31 H 0.407 0.593 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 16.900 -14.698 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.292 4.292 5 S 0.448 5.552 6 C -0.307 4.307 7 N -0.150 5.150 8 C -0.138 4.138 9 C 0.372 3.628 10 O -0.414 6.414 11 N -0.354 5.354 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.220 0.780 31 H 0.243 0.757 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.124 17.328 -14.346 27.678 hybrid contribution 1.333 -1.407 -0.092 1.940 sum -14.791 15.921 -14.439 26.091 Atomic orbital electron populations 1.21902 0.93801 1.02305 1.02071 1.20332 0.95897 0.95972 0.95167 1.21870 1.01623 0.94384 1.02021 1.25686 1.01586 1.00609 1.01273 1.82760 1.42936 1.33145 0.96388 1.28316 1.00415 0.98375 1.03598 1.66959 1.22570 1.27416 0.98074 1.20455 1.02491 0.98362 0.92452 1.17056 0.79558 0.79727 0.86422 1.90650 1.61413 1.61879 1.27459 1.46073 1.40040 1.37804 1.11499 1.21729 0.96929 0.96599 0.85441 1.21899 0.96239 0.95935 1.01860 1.19024 0.95670 0.95540 0.91057 1.21177 1.22063 1.20117 0.92744 0.92669 1.25024 0.97149 0.97270 0.94995 1.69956 1.42364 1.41872 0.99161 0.86640 0.81657 0.81874 0.77709 1.20243 1.21274 1.20231 0.92263 0.92898 0.91433 0.84512 0.91471 0.92301 0.92911 0.77965 0.75736 0.91487 0.91481 0.92620 0.92647 0.96250 0.96248 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.04 37.16 0.34 -0.90 16 2 C -0.05 -0.58 3.12 -91.77 -0.29 -0.86 16 3 C -0.14 -1.27 9.16 37.16 0.34 -0.93 16 4 C -0.17 -1.92 5.03 -35.38 -0.18 -2.10 16 5 S 0.19 1.50 22.43 -107.50 -2.41 -0.91 16 6 C -0.01 -0.06 12.17 51.43 0.63 0.56 16 7 N -0.44 -5.45 10.13 -12.36 -0.13 -5.57 16 8 C 0.00 -0.05 6.70 -84.52 -0.57 -0.61 16 9 C 0.59 9.73 7.79 -12.59 -0.10 9.63 16 10 O -0.54 -9.88 13.86 5.25 0.07 -9.81 16 11 N -0.70 -11.50 5.55 -61.43 -0.34 -11.84 16 12 C 0.12 2.12 5.67 -4.04 -0.02 2.10 16 13 C -0.12 -2.47 5.27 -26.73 -0.14 -2.61 16 14 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.38 7.83 -51.93 -0.41 -0.03 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.14 1.89 4.94 -51.93 -0.26 1.63 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.41 6.08 8.00 -40.82 -0.33 5.75 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -32.34 334.07 -8.20 -40.54 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.60 Total: 1.00 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.54 Total: -8.82 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.27 Total: -43.75 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.41 Total: -0.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.34 -8.20 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290248298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.793 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds