Wall clock time and date at job start Tue Mar 31 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46844 * 2 1 4 4 H 1.09004 * 109.47218 * 305.00026 * 3 2 1 5 5 C 1.50698 * 109.47429 * 185.00338 * 3 2 1 6 6 H 1.07998 * 120.00140 * 240.00722 * 5 3 2 7 7 C 1.37872 * 119.99994 * 59.99537 * 5 3 2 8 8 N 1.31518 * 120.00179 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00167 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47228 * 60.00051 * 9 7 5 11 11 H 1.48494 * 109.47264 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47050 * 299.99943 * 9 7 5 13 13 N 1.46509 * 109.47484 * 64.99996 * 3 2 1 14 14 C 1.34768 * 120.00156 * 275.00593 * 13 3 2 15 15 O 1.21632 * 120.00188 * 359.97438 * 14 13 3 16 16 C 1.47264 * 120.00177 * 179.97438 * 14 13 3 17 17 N 1.33560 * 123.13820 * 5.39006 * 16 14 13 18 18 C 1.28653 * 115.76542 * 180.02562 * 17 16 14 19 19 S 1.70769 * 110.56005 * 359.97438 * 18 17 16 20 20 C 1.35206 * 123.14452 * 185.42315 * 16 14 13 21 21 C 1.50696 * 125.58416 * 359.70402 * 20 16 14 22 22 C 1.52998 * 109.47450 * 114.65286 * 21 20 16 23 23 C 1.53001 * 109.47213 * 234.64985 * 21 20 16 24 24 H 1.09008 * 109.47374 * 299.99661 * 1 2 3 25 25 H 1.08997 * 109.47670 * 60.00154 * 1 2 3 26 26 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47191 * 240.00385 * 2 1 3 28 28 H 1.08993 * 109.47228 * 119.99671 * 2 1 3 29 29 H 0.97001 * 120.00079 * 179.97438 * 8 7 5 30 30 H 0.96995 * 119.99355 * 94.99771 * 13 3 2 31 31 H 1.07995 * 124.72167 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47264 * 354.64870 * 21 20 16 33 33 H 1.09004 * 109.47309 * 180.02562 * 22 21 20 34 34 H 1.09008 * 109.46757 * 299.99659 * 22 21 20 35 35 H 1.08993 * 109.47370 * 59.99771 * 22 21 20 36 36 H 1.09009 * 109.47084 * 59.99979 * 23 21 20 37 37 H 1.08997 * 109.47739 * 179.97438 * 23 21 20 38 38 H 1.09001 * 109.47351 * 300.00403 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1431 0.8786 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8804 -1.3813 10 1 6.5967 0.1456 -0.2345 11 1 6.3977 0.2171 -2.6505 12 1 6.5002 2.2804 -1.3811 13 7 1.6523 2.0976 1.2519 14 6 0.4351 2.6644 1.3671 15 8 -0.3417 2.6325 0.4316 16 6 0.0453 3.3223 2.6256 17 7 0.8821 3.4860 3.6535 18 6 0.3922 4.0796 4.6845 19 16 -1.2423 4.4955 4.4166 20 6 -1.1933 3.8166 2.8486 21 6 -2.3405 3.7813 1.8720 22 6 -3.4544 2.8906 2.4256 23 6 -2.8771 5.1990 1.6641 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5137 0.8899 29 1 3.8291 -0.0603 -2.9503 30 1 2.2719 2.1232 1.9977 31 1 0.9387 4.2868 5.5925 32 1 -1.9944 3.3805 0.9192 33 1 -4.2840 2.8647 1.7189 34 1 -3.0721 1.8805 2.5736 35 1 -3.8005 3.2913 3.3782 36 1 -2.0834 5.8337 1.2696 37 1 -3.7065 5.1737 0.9574 38 1 -3.2231 5.5999 2.6168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290318769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:06 Heat of formation + Delta-G solvation = -10.689344 kcal Electronic energy + Delta-G solvation = -20472.144888 eV Core-core repulsion = 17440.933930 eV Total energy + Delta-G solvation = -3031.210958 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27665 -38.15902 -35.85794 -34.84298 -32.31856 -30.96663 -29.56019 -27.17521 -27.14125 -25.40787 -23.20504 -22.13063 -21.37192 -19.72209 -19.20021 -17.84687 -16.90946 -15.82352 -15.34551 -15.14127 -15.03076 -14.31030 -14.11612 -13.89659 -13.71610 -13.14053 -13.02035 -12.66856 -12.27486 -12.11849 -11.87169 -11.48975 -11.45304 -11.23217 -11.21660 -11.05178 -10.84631 -10.78939 -10.28592 -10.14076 -9.73149 -9.60139 -9.37836 -9.03940 -8.91240 -8.80527 -8.46731 -7.78905 -6.09427 -4.18251 0.66448 1.30503 1.71687 2.32341 3.28785 3.33407 3.35490 3.96504 4.07188 4.32770 4.48632 4.78902 4.94397 5.17144 5.21485 5.22494 5.52229 5.56402 5.63536 5.77792 5.90198 6.04556 6.12391 6.24145 6.40658 6.47459 6.53727 6.69279 7.06989 7.19705 7.37978 7.46656 7.52438 7.66929 7.79088 7.93581 8.19905 8.70835 8.79574 9.13068 9.48634 10.95992 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.004795 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.796719 B = 5837.614623 C = 6471.408394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.685 5.685 14 C 0.579 3.421 15 O -0.540 6.540 16 C 0.005 3.995 17 N -0.433 5.433 18 C -0.010 4.010 19 S 0.170 5.830 20 C -0.171 4.171 21 C -0.052 4.052 22 C -0.139 4.139 23 C -0.142 4.142 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.023 0.977 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.397 0.603 31 H 0.200 0.800 32 H 0.141 0.859 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.993 7.386 12.838 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.331 5.331 14 C 0.361 3.639 15 O -0.420 6.420 16 C -0.129 4.129 17 N -0.147 5.147 18 C -0.309 4.309 19 S 0.425 5.575 20 C -0.294 4.294 21 C -0.073 4.073 22 C -0.197 4.197 23 C -0.200 4.200 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.119 0.881 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.231 0.769 31 H 0.217 0.783 32 H 0.158 0.842 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.603 7.541 12.582 18.703 hybrid contribution 1.764 -0.419 -0.266 1.833 sum -9.839 7.123 12.316 17.298 Atomic orbital electron populations 1.21841 0.98358 0.98072 1.01177 1.21934 0.92630 0.99690 1.02369 1.18867 0.94383 0.89245 0.80754 0.93097 1.21199 0.90652 1.38998 1.06311 0.92068 1.24867 0.98603 0.94772 0.95336 1.69884 1.35193 1.37674 1.09331 0.86509 0.84876 0.78323 0.77403 1.20142 1.21139 1.20195 1.46401 1.13999 1.53906 1.18747 1.16999 0.83275 0.79010 0.84612 1.90611 1.51325 1.61227 1.38848 1.20823 0.89997 1.05693 0.96436 1.66984 1.34623 1.13643 0.99488 1.28282 0.96863 1.03616 1.02184 1.82613 1.12746 1.53740 1.08372 1.25607 1.00124 1.03422 1.00273 1.20315 0.90389 0.97074 0.99508 1.21850 0.97649 0.99756 1.00473 1.21889 1.01203 0.95427 1.01431 0.94379 0.93031 0.95836 0.88150 0.95005 0.92535 0.76896 0.78308 0.84173 0.91719 0.92348 0.93160 0.92325 0.91677 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.93 2.24 -69.08 -0.15 6.78 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.68 -15.36 5.02 -56.06 -0.28 -15.64 16 14 C 0.58 12.28 6.35 -12.60 -0.08 12.20 16 15 O -0.54 -12.28 11.00 5.25 0.06 -12.22 16 16 C 0.00 0.08 6.70 -84.53 -0.57 -0.48 16 17 N -0.43 -6.98 10.13 -12.36 -0.13 -7.10 16 18 C -0.01 -0.11 12.17 51.43 0.63 0.51 16 19 S 0.17 1.81 22.43 -107.50 -2.41 -0.60 16 20 C -0.17 -2.50 5.03 -35.39 -0.18 -2.68 16 21 C -0.05 -0.72 3.12 -91.77 -0.29 -1.01 16 22 C -0.14 -1.62 9.16 37.16 0.34 -1.28 16 23 C -0.14 -1.60 9.04 37.16 0.34 -1.27 16 24 H 0.04 0.84 5.65 -51.92 -0.29 0.54 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.40 8.44 8.07 -40.82 -0.33 8.11 16 31 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.14 2.41 4.95 -51.93 -0.26 2.15 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.49 7.83 -51.93 -0.41 0.08 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -29.80 321.49 -7.82 -37.62 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.32 Total: 7.74 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.19 Total: -6.31 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.22 Total: -46.99 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.06 Total: -12.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.41 Total: -0.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.80 -7.82 -37.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290318769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.928 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds