Wall clock time and date at job start Tue Mar 31 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 C 1.53008 * 109.46911 * 173.62988 * 3 2 1 5 5 N 1.46496 * 109.47275 * 53.63289 * 3 2 1 6 6 C 1.34777 * 120.00417 * 59.99594 * 5 3 2 7 7 O 1.21285 * 119.99721 * 0.02562 * 6 5 3 8 8 C 1.50698 * 120.00397 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.47227 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46854 * 180.02562 * 9 8 6 11 11 H 1.07992 * 120.00362 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99648 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99835 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47297 * 90.00139 * 14 12 10 16 16 H 1.48504 * 109.47126 * 210.00110 * 14 12 10 17 17 H 1.48498 * 109.47015 * 330.00045 * 14 12 10 18 18 C 1.50690 * 109.46987 * 293.63081 * 3 2 1 19 19 N 1.29034 * 124.91760 * 171.26563 * 18 3 2 20 20 C 1.31781 * 117.12700 * 180.02562 * 19 18 3 21 21 C 1.33639 * 114.49904 * 359.97438 * 20 19 18 22 22 S 1.70978 * 124.91922 * 351.57660 * 18 3 2 23 23 H 1.08998 * 109.46839 * 306.53213 * 1 2 3 24 24 H 1.09000 * 109.46673 * 66.53054 * 1 2 3 25 25 H 1.08993 * 109.47025 * 186.52951 * 1 2 3 26 26 H 1.09000 * 109.47273 * 239.99946 * 2 1 3 27 27 H 1.09002 * 109.46635 * 120.00042 * 2 1 3 28 28 H 1.09001 * 109.46757 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.46872 * 299.99878 * 4 3 2 30 30 H 1.08998 * 109.46662 * 60.00074 * 4 3 2 31 31 H 0.97006 * 120.00194 * 240.00091 * 5 3 2 32 32 H 1.09002 * 109.47298 * 300.00005 * 8 6 5 33 33 H 1.08994 * 109.47079 * 60.00192 * 8 6 5 34 34 H 1.09002 * 109.46584 * 299.99351 * 9 8 6 35 35 H 1.08994 * 109.47417 * 59.99807 * 9 8 6 36 36 H 0.96999 * 119.99961 * 179.97438 * 13 12 10 37 37 H 1.07997 * 122.74868 * 179.97438 * 20 19 18 38 38 H 1.08000 * 126.03570 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5617 1.4454 0.1601 5 7 1.4307 2.1759 1.1122 6 6 1.6255 1.7617 2.3798 7 8 2.3057 0.7819 2.5998 8 6 0.9982 2.5158 3.5238 9 6 1.3739 1.8427 4.8454 10 6 0.7460 2.5965 5.9894 11 1 0.1401 3.4686 5.7935 12 6 0.9453 2.1726 7.2862 13 7 0.3978 2.8307 8.2845 14 14 1.9929 0.6636 7.6250 15 1 3.4087 1.0740 7.8049 16 1 1.5111 -0.0064 8.8597 17 1 1.8916 -0.2765 6.4800 18 6 1.6706 2.1059 -1.3016 19 7 1.8111 3.3631 -1.5558 20 6 1.4361 3.7806 -2.7482 21 6 0.9529 2.8221 -3.5443 22 16 0.9974 1.3030 -2.6528 23 1 -0.3633 0.6117 0.8257 24 1 -0.3633 0.4093 -0.9427 25 1 -0.3633 -1.0209 0.1169 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9251 2.4731 0.1596 29 1 3.8289 0.9655 1.1016 30 1 4.0151 0.8997 -0.6674 31 1 0.8869 2.9597 0.9363 32 1 1.3612 3.5436 3.5240 33 1 -0.0857 2.5133 3.4097 34 1 1.0112 0.8148 4.8455 35 1 2.4579 1.8455 4.9594 36 1 0.5377 2.5323 9.1968 37 1 1.5131 4.8127 -3.0567 38 1 0.5944 2.9559 -4.5543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291377943.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:22 Heat of formation + Delta-G solvation = -1.272634 kcal Electronic energy + Delta-G solvation = -20143.828562 eV Core-core repulsion = 17113.025943 eV Total energy + Delta-G solvation = -3030.802619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52649 -39.33008 -36.48394 -33.45591 -32.39470 -31.16979 -30.71390 -29.45828 -26.15461 -25.75204 -23.73342 -22.19577 -20.94426 -19.93432 -19.25088 -18.27723 -17.18122 -16.40961 -15.74813 -15.32623 -15.27184 -14.87295 -14.14388 -14.05827 -13.95029 -13.54621 -13.37995 -13.28200 -12.60006 -12.54354 -12.29033 -11.99949 -11.67860 -11.47747 -11.39552 -11.20770 -11.04678 -10.87974 -10.13354 -10.00438 -9.95586 -9.75918 -9.67721 -9.16828 -9.15238 -9.03382 -8.84953 -8.48623 -6.00840 -3.99417 0.38290 1.04791 1.48182 2.54478 3.11996 3.39414 3.45762 3.50134 3.56303 3.71868 4.50904 4.52645 4.83014 4.87880 4.94655 5.12074 5.20798 5.34547 5.34739 5.52898 5.55308 5.67777 5.79856 5.84413 5.93129 6.09854 6.11197 6.14650 6.25182 6.30783 6.64220 6.72794 7.38785 7.45765 7.46284 7.78673 7.83814 8.52481 8.67131 9.02701 9.62164 11.12107 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033922 B = 0.003831 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.223019 B = 7307.450593 C = 7556.571402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C 0.259 3.741 4 C -0.157 4.157 5 N -0.724 5.724 6 C 0.517 3.483 7 O -0.536 6.536 8 C -0.122 4.122 9 C 0.003 3.997 10 C -0.525 4.525 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.904 5.904 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.261 1.261 18 C 0.045 3.955 19 N -0.463 5.463 20 C 0.039 3.961 21 C -0.273 4.273 22 S 0.151 5.849 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.402 0.598 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.263 0.737 37 H 0.176 0.824 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -2.639 -26.275 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C 0.169 3.831 4 C -0.216 4.216 5 N -0.378 5.378 6 C 0.306 3.694 7 O -0.412 6.412 8 C -0.162 4.162 9 C -0.035 4.035 10 C -0.562 4.562 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.234 4.234 19 N -0.177 5.177 20 C -0.113 4.113 21 C -0.413 4.413 22 S 0.406 5.594 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.237 0.763 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.193 0.807 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.319 -4.025 -25.741 26.087 hybrid contribution 0.274 0.801 -0.313 0.903 sum 1.593 -3.224 -26.054 26.301 Atomic orbital electron populations 1.21935 0.95064 1.02495 1.01977 1.22123 0.97035 0.94597 1.04501 1.18727 0.94434 0.90389 0.79547 1.22218 0.92069 1.03245 1.04079 1.46217 1.54282 1.32325 1.05023 1.21469 0.79936 0.84719 0.83238 1.90583 1.39099 1.27056 1.84425 1.21677 1.00942 1.00156 0.93409 1.19357 0.97060 0.96392 0.90655 1.21125 1.31798 1.13514 0.89810 0.90983 1.24975 0.95399 0.96732 0.96159 1.69913 1.44895 1.40309 0.99198 0.86789 0.80826 0.83990 0.77899 1.20269 1.21514 1.18495 1.27241 1.02296 0.92796 1.01023 1.66212 1.18317 1.13449 1.19736 1.21836 0.99682 1.01423 0.88310 1.27303 1.11361 0.96368 1.06229 1.84086 1.56778 1.11968 1.06561 0.91708 0.92879 0.92016 0.91273 0.87673 0.91669 0.88866 0.92180 0.76294 0.89584 0.89682 0.95800 0.96237 0.92748 0.80746 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.43 37.16 0.35 -1.41 16 2 C -0.14 -1.72 4.23 -26.73 -0.11 -1.83 16 3 C 0.26 3.27 0.72 -132.97 -0.10 3.18 16 4 C -0.16 -2.05 8.38 37.16 0.31 -1.74 16 5 N -0.72 -10.15 4.03 -48.69 -0.20 -10.35 16 6 C 0.52 9.11 6.96 -10.99 -0.08 9.03 16 7 O -0.54 -10.86 12.27 5.55 0.07 -10.79 16 8 C -0.12 -2.36 5.64 -27.88 -0.16 -2.52 16 9 C 0.00 0.08 3.33 -27.88 -0.09 -0.01 16 10 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 11 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 14 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 18 C 0.04 0.50 5.54 -13.46 -0.07 0.43 16 19 N -0.46 -5.47 10.48 -11.87 -0.12 -5.60 16 20 C 0.04 0.36 11.35 -19.18 -0.22 0.14 16 21 C -0.27 -2.12 11.37 29.12 0.33 -1.79 16 22 S 0.15 1.32 19.25 -107.50 -2.07 -0.75 16 23 H 0.06 0.82 6.98 -51.93 -0.36 0.46 16 24 H 0.05 0.52 5.55 -50.72 -0.28 0.24 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.69 7.42 -51.93 -0.39 0.30 16 27 H 0.10 1.52 6.37 -51.93 -0.33 1.19 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.42 6.17 -51.93 -0.32 1.10 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.40 5.14 8.41 -40.82 -0.34 4.80 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 35 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -32.97 318.98 -7.01 -39.97 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.33 Total: 2.14 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.27 Total: -9.95 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.45 Total: -43.32 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.07 Total: -0.75 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.97 -7.01 -39.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291377943.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.700 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds