Wall clock time and date at job start Tue Mar 31 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47090 * 64.97793 * 6 5 4 8 8 C 1.52996 * 109.47048 * 184.97591 * 6 5 4 9 9 N 1.46500 * 109.46828 * 304.97508 * 6 5 4 10 10 C 1.34779 * 120.00015 * 179.97438 * 9 6 5 11 11 O 1.21290 * 119.99865 * 0.02562 * 10 9 6 12 12 C 1.50699 * 120.00287 * 180.02562 * 10 9 6 13 13 C 1.53001 * 109.46881 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.46881 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00234 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99659 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47044 * 89.99845 * 18 16 14 20 20 H 1.48498 * 109.47307 * 210.00195 * 18 16 14 21 21 H 1.48506 * 109.46968 * 330.00171 * 18 16 14 22 22 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 23 23 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 26 26 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 27 27 H 1.08991 * 109.47396 * 59.99724 * 7 6 5 28 28 H 1.09001 * 109.46649 * 180.02562 * 7 6 5 29 29 H 1.09007 * 109.46943 * 300.00033 * 7 6 5 30 30 H 1.09008 * 109.47053 * 59.99956 * 8 6 5 31 31 H 1.09001 * 109.47080 * 179.97438 * 8 6 5 32 32 H 1.08999 * 109.47559 * 300.00083 * 8 6 5 33 33 H 0.96996 * 120.00206 * 0.02562 * 9 6 5 34 34 H 1.08998 * 109.46906 * 300.00270 * 12 10 9 35 35 H 1.08993 * 109.46908 * 60.00027 * 12 10 9 36 36 H 1.08998 * 109.47105 * 299.99577 * 13 12 10 37 37 H 1.08993 * 109.47794 * 59.99998 * 13 12 10 38 38 H 0.97002 * 120.00095 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 6 6.0364 -0.5175 1.3066 8 6 5.3588 -2.4493 -0.1255 9 7 6.0760 -0.3390 -1.1323 10 6 7.3733 -0.6440 -1.3339 11 8 7.9422 -1.4035 -0.5785 12 6 8.1170 -0.0413 -2.4978 13 6 9.5607 -0.5479 -2.4978 14 6 10.3043 0.0543 -3.6621 15 1 9.7976 0.7303 -4.3350 16 6 11.6313 -0.2577 -3.8684 17 7 12.2800 0.2674 -4.8848 18 14 12.5078 -1.4264 -2.7042 19 1 12.3607 -2.8194 -3.1975 20 1 13.9488 -1.0734 -2.6404 21 1 11.9106 -1.3155 -1.3490 22 16 2.5436 -1.4247 0.0079 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5142 26 1 1.9024 2.0875 0.0004 27 1 5.4987 -0.9530 2.1486 28 1 7.0651 -0.8779 1.3063 29 1 6.0324 0.5689 1.3957 30 1 4.8720 -2.7393 -1.0567 31 1 6.3874 -2.8101 -0.1260 32 1 4.8210 -2.8850 0.7165 33 1 5.6212 0.2686 -1.7362 34 1 7.6305 -0.3312 -3.4291 35 1 8.1126 1.0449 -2.4085 36 1 10.0474 -0.2582 -1.5665 37 1 9.5648 -1.6341 -2.5873 38 1 13.2138 0.0482 -5.0297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291508656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:10 Heat of formation + Delta-G solvation = -6.917585 kcal Electronic energy + Delta-G solvation = -19636.782312 eV Core-core repulsion = 16605.734910 eV Total energy + Delta-G solvation = -3031.047402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42781 -39.34461 -36.19245 -33.45792 -32.78426 -31.86938 -30.75276 -27.52359 -27.31477 -26.05970 -24.56430 -22.41454 -20.90061 -19.57606 -19.24021 -18.18304 -17.24060 -16.31421 -15.82108 -15.19899 -15.05518 -14.85350 -14.14153 -13.95038 -13.74501 -13.50256 -13.35229 -13.12133 -13.00264 -12.58801 -12.54432 -12.33781 -11.92677 -11.74130 -11.46838 -11.36649 -11.24681 -10.91274 -10.13039 -10.00130 -9.91953 -9.74673 -9.50238 -9.23150 -9.16335 -8.99857 -8.85169 -8.48438 -6.00626 -3.99214 0.35923 0.99964 1.45910 2.52351 3.11463 3.39508 3.45927 3.50510 3.56836 3.72744 4.52899 4.54826 4.59373 4.75591 4.93856 4.99960 5.06418 5.33571 5.34886 5.36808 5.48036 5.52222 5.68013 5.70812 5.87563 5.89389 6.09459 6.12800 6.22228 6.32915 6.64161 6.73002 7.38893 7.46490 7.46700 7.78557 7.83699 8.52589 8.66640 9.02850 9.62355 11.12304 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038156 B = 0.003399 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.645647 B = 8234.956756 C = 8569.875397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.232 4.232 3 C 0.032 3.968 4 N -0.458 5.458 5 C 0.039 3.961 6 C 0.257 3.743 7 C -0.155 4.155 8 C -0.174 4.174 9 N -0.726 5.726 10 C 0.517 3.483 11 O -0.536 6.536 12 C -0.122 4.122 13 C 0.003 3.997 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.260 1.260 22 S 0.144 5.856 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.175 0.825 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.402 0.598 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.554 -2.352 11.617 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.353 4.353 3 C -0.119 4.119 4 N -0.171 5.171 5 C -0.239 4.239 6 C 0.167 3.833 7 C -0.215 4.215 8 C -0.233 4.233 9 N -0.381 5.381 10 C 0.306 3.694 11 O -0.412 6.412 12 C -0.162 4.162 13 C -0.035 4.035 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.185 1.185 22 S 0.399 5.601 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.192 0.808 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.236 0.764 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.705 -3.572 12.087 27.734 hybrid contribution -0.154 0.765 0.158 0.796 sum -24.859 -2.808 12.245 27.853 Atomic orbital electron populations 1.20229 0.86722 1.03398 1.03029 1.26157 1.01827 0.95752 1.11593 1.21732 0.86797 1.00157 1.03173 1.66197 1.17687 1.18577 1.14679 1.27145 1.00378 0.91699 1.04690 1.18667 0.82418 0.93038 0.89195 1.22203 1.02888 1.02403 0.93980 1.22383 1.05902 0.92967 1.02036 1.46246 1.11920 1.50199 1.29737 1.21495 0.80412 0.80546 0.86919 1.90582 1.67430 1.35914 1.47314 1.21678 0.98699 1.01352 0.94440 1.19359 0.89673 0.96643 0.97816 1.21126 0.95812 1.28447 1.10854 0.90977 1.24977 0.97405 0.95809 0.95099 1.69914 1.10481 1.44547 1.29388 0.86787 0.78538 0.81444 0.82725 1.20276 1.21510 1.18471 1.83991 0.97730 1.10622 1.67709 0.90430 0.90221 0.91097 0.80831 0.92211 0.88939 0.91681 0.91915 0.88079 0.91574 0.76355 0.89670 0.89532 0.95765 0.96245 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.42 36.01 0.38 -0.01 16 2 C -0.23 -1.95 6.60 -35.92 -0.24 -2.19 16 3 C 0.03 0.32 11.25 -19.18 -0.22 0.10 16 4 N -0.46 -5.61 10.54 -11.86 -0.13 -5.74 16 5 C 0.04 0.46 5.87 -13.45 -0.08 0.38 16 6 C 0.26 3.34 1.02 -132.97 -0.14 3.21 16 7 C -0.16 -2.09 8.38 37.16 0.31 -1.78 16 8 C -0.17 -2.12 7.48 37.16 0.28 -1.84 16 9 N -0.73 -10.49 5.10 -48.68 -0.25 -10.74 16 10 C 0.52 9.30 7.25 -10.98 -0.08 9.22 16 11 O -0.54 -11.05 12.19 5.55 0.07 -10.98 16 12 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 13 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16 14 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 18 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 22 S 0.14 1.33 21.59 -107.50 -2.32 -0.99 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.44 6.17 -51.93 -0.32 1.12 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.72 8.03 -51.92 -0.42 0.30 16 31 H 0.10 1.48 6.17 -51.93 -0.32 1.16 16 32 H 0.07 0.66 7.81 -51.93 -0.41 0.26 16 33 H 0.40 5.25 8.46 -40.82 -0.35 4.91 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.02 0.63 7.15 -51.93 -0.37 0.25 16 37 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -33.38 326.64 -7.60 -40.98 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.54 Total: 1.02 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.46 Total: -8.97 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.40 Total: -43.94 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.32 Total: -0.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.38 -7.60 -40.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291508656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.063 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds