Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47043 * 2 1 4 4 H 1.08991 * 109.47576 * 54.99838 * 3 2 1 5 5 N 1.46499 * 109.46747 * 294.99428 * 3 2 1 6 6 C 1.34773 * 119.99980 * 85.00723 * 5 3 2 7 7 O 1.21282 * 120.00030 * 359.97438 * 6 5 3 8 8 C 1.50695 * 120.00001 * 179.97438 * 6 5 3 9 9 C 1.53008 * 109.47098 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.46944 * 180.02562 * 9 8 6 11 11 H 1.07996 * 120.00195 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99669 * 180.02562 * 10 9 8 13 13 N 1.31521 * 120.00002 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00189 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46834 * 90.00086 * 14 12 10 16 16 H 1.48494 * 109.47164 * 210.00469 * 14 12 10 17 17 H 1.48499 * 109.46970 * 330.00325 * 14 12 10 18 18 C 1.50709 * 109.46724 * 174.99962 * 3 2 1 19 19 N 1.29023 * 124.91372 * 254.99187 * 18 3 2 20 20 C 1.31784 * 117.12236 * 179.97438 * 19 18 3 21 21 C 1.50698 * 122.74831 * 179.97438 * 20 19 18 22 22 C 1.33639 * 114.50230 * 0.02562 * 20 19 18 23 23 S 1.70979 * 124.91513 * 74.99536 * 18 3 2 24 24 H 1.08997 * 109.47059 * 60.00060 * 1 2 3 25 25 H 1.08993 * 109.47603 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47109 * 300.00780 * 1 2 3 27 27 H 1.08995 * 109.46813 * 239.99089 * 2 1 3 28 28 H 1.09001 * 109.46461 * 119.99515 * 2 1 3 29 29 H 0.97010 * 120.00074 * 265.00383 * 5 3 2 30 30 H 1.09002 * 109.47759 * 299.99952 * 8 6 5 31 31 H 1.08997 * 109.47614 * 60.00041 * 8 6 5 32 32 H 1.08995 * 109.47169 * 300.00026 * 9 8 6 33 33 H 1.08993 * 109.46871 * 60.00395 * 9 8 6 34 34 H 0.96995 * 119.99909 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.47707 * 90.00076 * 21 20 19 36 36 H 1.09002 * 109.46945 * 210.00660 * 21 20 19 37 37 H 1.09001 * 109.47276 * 330.00085 * 21 20 19 38 38 H 1.07997 * 126.03698 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 7 1.6525 2.0973 -1.2519 6 6 0.4353 2.6643 -1.3671 7 8 -0.3395 2.6320 -0.4346 8 6 0.0369 3.3384 -2.6547 9 6 -1.3824 3.8942 -2.5214 10 6 -1.7810 4.5677 -3.8093 11 1 -1.0910 4.5969 -4.6395 12 6 -3.0264 5.1477 -3.9272 13 7 -3.3741 5.7360 -5.0509 14 14 -4.2197 5.0978 -2.4909 15 1 -4.0168 6.2956 -1.6370 16 1 -5.6128 5.0865 -3.0049 17 1 -3.9781 3.8715 -1.6889 18 6 3.5420 1.4442 0.1239 19 7 4.1943 1.7486 1.1946 20 6 5.5097 1.6983 1.1315 21 6 6.3954 2.0285 2.3052 22 6 5.9939 1.3316 -0.0589 23 16 4.6282 1.0431 -1.1343 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8900 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.2721 2.1229 -1.9979 30 1 0.7283 4.1539 -2.8670 31 1 0.0682 2.6143 -3.4688 32 1 -2.0736 3.0785 -2.3094 33 1 -1.4141 4.6182 -1.7074 34 1 -4.2503 6.1436 -5.1339 35 1 6.5855 1.1240 2.8828 36 1 7.3404 2.4346 1.9443 37 1 5.9009 2.7660 2.9374 38 1 7.0378 1.2302 -0.3164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291768872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = -9.807187 kcal Electronic energy + Delta-G solvation = -19548.984780 eV Core-core repulsion = 16517.812076 eV Total energy + Delta-G solvation = -3031.172705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38195 -39.49730 -36.07348 -33.49899 -32.46635 -32.05998 -31.10283 -28.25137 -27.60807 -25.83680 -23.41926 -21.90438 -20.96500 -20.24924 -19.37710 -18.12099 -17.21250 -16.20002 -16.13761 -15.64954 -15.20227 -15.00202 -14.11661 -13.95659 -13.90215 -13.69840 -13.32407 -12.97999 -12.82824 -12.62603 -12.55089 -12.16124 -11.71697 -11.62537 -11.49866 -11.41555 -10.99362 -10.85134 -10.16560 -10.05655 -9.92170 -9.78381 -9.72303 -9.33668 -9.18640 -9.03314 -8.94585 -8.50587 -6.02911 -4.01787 0.36690 1.03129 1.43378 2.43399 3.04422 3.18725 3.38479 3.45135 3.55491 3.82235 4.51065 4.53027 4.80921 4.86425 4.91841 5.04027 5.24577 5.26520 5.32648 5.35311 5.41325 5.51672 5.68215 5.77293 5.90719 5.97612 6.04823 6.07413 6.14626 6.45436 6.53603 6.66409 7.35618 7.42692 7.44690 7.62894 7.78701 8.48244 8.58326 9.00106 9.60039 11.09917 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.003559 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.285087 B = 7865.686009 C = 8142.314568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.117 0.883 5 N -0.738 5.738 6 C 0.515 3.485 7 O -0.527 6.527 8 C -0.122 4.122 9 C 0.002 3.998 10 C -0.525 4.525 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.260 1.260 18 C 0.050 3.950 19 N -0.463 5.463 20 C 0.068 3.932 21 C -0.079 4.079 22 C -0.264 4.264 23 S 0.130 5.870 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.397 0.603 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.654 -12.457 10.492 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.135 0.865 5 N -0.394 5.394 6 C 0.304 3.696 7 O -0.402 6.402 8 C -0.162 4.162 9 C -0.036 4.036 10 C -0.563 4.563 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.229 4.229 19 N -0.178 5.178 20 C -0.064 4.064 21 C -0.138 4.138 22 C -0.403 4.403 23 S 0.385 5.615 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.231 0.769 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 19.504 -12.528 10.503 25.449 hybrid contribution 0.389 0.268 0.932 1.045 sum 19.893 -12.261 11.435 26.016 Atomic orbital electron populations 1.21811 0.93452 1.01003 1.04010 1.21967 0.98093 0.94028 1.02382 1.19382 0.83697 0.95420 0.90401 0.86511 1.46337 1.18195 1.59865 1.14974 1.21519 0.79927 0.76836 0.91296 1.90678 1.50670 1.57838 1.40966 1.21698 1.01898 1.00104 0.92505 1.19370 0.90089 0.96491 0.97605 1.21108 1.01037 1.35607 0.98561 0.90944 1.24975 0.98037 0.94543 0.95687 1.69913 1.21218 1.37523 1.25600 0.86793 0.80099 0.79573 0.83077 1.20260 1.21478 1.18473 1.27194 1.01141 1.02159 0.92442 1.66075 1.07165 1.16737 1.27791 1.20359 0.89251 1.00760 0.96072 1.20370 0.96958 1.02515 0.93979 1.26861 1.03825 1.12805 0.96831 1.83983 0.97523 1.62852 1.17127 0.91577 0.93173 0.91794 0.91554 0.90984 0.76903 0.89537 0.89444 0.95719 0.96217 0.92716 0.90569 0.90648 0.90400 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.52 37.16 0.32 -1.64 16 2 C -0.12 -1.43 5.59 -26.73 -0.15 -1.58 16 3 C 0.22 2.82 2.76 -69.08 -0.19 2.63 16 4 H 0.12 1.76 7.58 -51.93 -0.39 1.37 16 5 N -0.74 -9.88 5.01 -54.94 -0.28 -10.15 16 6 C 0.52 8.96 6.40 -10.99 -0.07 8.89 16 7 O -0.53 -10.84 13.12 5.56 0.07 -10.77 16 8 C -0.12 -2.30 5.64 -27.88 -0.16 -2.46 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.04 16 10 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 14 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 18 C 0.05 0.58 6.30 -13.45 -0.08 0.50 16 19 N -0.46 -5.87 10.53 -8.05 -0.08 -5.96 16 20 C 0.07 0.69 6.74 -84.22 -0.57 0.13 16 21 C -0.08 -0.56 10.31 36.00 0.37 -0.19 16 22 C -0.26 -2.28 11.13 29.12 0.32 -1.95 16 23 S 0.13 1.19 22.28 -107.50 -2.39 -1.21 16 24 H 0.07 1.04 5.64 -51.93 -0.29 0.75 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.94 7.85 -51.92 -0.41 0.53 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.40 4.38 7.79 -40.82 -0.32 4.06 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 33 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -33.49 327.98 -7.93 -41.42 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.56 Total: 0.09 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.73 Total: -9.01 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.41 Total: -43.29 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.39 Total: -1.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.49 -7.93 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291768872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.615 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds