Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 6 6 C 1.34776 * 120.00080 * 275.00208 * 5 3 2 7 7 O 1.21276 * 120.00121 * 0.02562 * 6 5 3 8 8 C 1.50698 * 119.99878 * 179.97438 * 6 5 3 9 9 C 1.53003 * 109.47304 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47304 * 179.97438 * 9 8 6 11 11 H 1.08003 * 120.00078 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99945 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99984 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99687 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46834 * 90.00545 * 14 12 10 16 16 H 1.48500 * 109.46822 * 210.00326 * 14 12 10 17 17 H 1.48495 * 109.47381 * 330.00442 * 14 12 10 18 18 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 19 19 N 1.29018 * 124.91880 * 104.71662 * 18 3 2 20 20 C 1.31786 * 117.12676 * 179.81782 * 19 18 3 21 21 C 1.50699 * 122.75129 * 180.22541 * 20 19 18 22 22 C 1.33632 * 114.49681 * 0.47589 * 20 19 18 23 23 S 1.70978 * 124.91631 * 285.03082 * 18 3 2 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.97001 * 119.99703 * 95.00546 * 5 3 2 30 30 H 1.08998 * 109.47466 * 299.99891 * 8 6 5 31 31 H 1.09003 * 109.47620 * 60.00219 * 8 6 5 32 32 H 1.08998 * 109.46959 * 300.00432 * 9 8 6 33 33 H 1.08999 * 109.46826 * 60.00009 * 9 8 6 34 34 H 0.96999 * 119.99873 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.47308 * 270.24769 * 21 20 19 36 36 H 1.09002 * 109.47094 * 30.24716 * 21 20 19 37 37 H 1.08992 * 109.47258 * 150.24332 * 21 20 19 38 38 H 1.08009 * 126.03466 * 179.78605 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6643 1.3670 7 8 -0.3395 2.6319 0.4345 8 6 0.0363 3.3376 2.6549 9 6 -1.3824 3.8946 2.5211 10 6 -1.7815 4.5673 3.8092 11 1 -1.0920 4.5952 4.6401 12 6 -3.0268 5.1472 3.9271 13 7 -3.3749 5.7347 5.0510 14 14 -4.2190 5.0996 2.4898 15 1 -5.0546 3.8753 2.5802 16 1 -5.0929 6.2996 2.5316 17 1 -3.4574 5.0860 1.2151 18 6 3.5419 1.4443 -0.1238 19 7 4.1942 1.7436 -1.1960 20 6 5.5097 1.6984 -1.1314 21 6 6.3954 2.0278 -2.3053 22 6 5.9937 1.3314 0.0589 23 16 4.6281 1.0427 1.1341 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.2720 2.1231 1.9978 30 1 0.0673 2.6129 3.4685 31 1 0.7277 4.1529 2.8680 32 1 -1.4129 4.6194 1.7076 33 1 -2.0740 3.0796 2.3078 34 1 -4.2509 6.1430 5.1338 35 1 6.5858 1.1228 -2.8821 36 1 5.9007 2.7646 -2.9382 37 1 7.3402 2.4344 -1.9448 38 1 7.0378 1.2302 0.3164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291768874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = -9.799986 kcal Electronic energy + Delta-G solvation = -19548.727245 eV Core-core repulsion = 16517.554853 eV Total energy + Delta-G solvation = -3031.172392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38274 -39.49816 -36.07446 -33.49964 -32.46753 -32.06014 -31.10429 -28.25188 -27.60814 -25.83664 -23.41926 -21.90506 -20.96455 -20.24982 -19.37666 -18.12145 -17.21234 -16.19839 -16.13890 -15.64908 -15.20269 -15.00181 -14.12097 -13.94432 -13.91596 -13.69785 -13.31853 -12.98041 -12.82935 -12.61807 -12.56357 -12.15771 -11.71955 -11.62495 -11.49519 -11.42287 -10.99179 -10.85091 -10.17964 -10.03806 -9.92200 -9.78976 -9.72217 -9.33523 -9.18593 -9.03453 -8.94482 -8.50675 -6.02927 -4.01777 0.36742 1.03133 1.43423 2.43376 3.04459 3.18725 3.38270 3.45064 3.55779 3.82229 4.51077 4.53032 4.80899 4.86400 4.91878 5.03957 5.24586 5.26494 5.32661 5.35331 5.41308 5.51678 5.68175 5.77234 5.90714 5.97464 6.04906 6.07324 6.14526 6.45388 6.53383 6.66431 7.35369 7.42937 7.44700 7.62931 7.78728 8.48238 8.58331 9.00090 9.60044 11.09912 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.003559 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.164207 B = 7866.320161 C = 8142.619323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.117 0.883 5 N -0.738 5.738 6 C 0.515 3.485 7 O -0.527 6.527 8 C -0.122 4.122 9 C 0.002 3.998 10 C -0.525 4.525 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.261 1.261 18 C 0.050 3.950 19 N -0.463 5.463 20 C 0.068 3.932 21 C -0.079 4.079 22 C -0.264 4.264 23 S 0.130 5.870 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.396 0.604 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.679 -12.383 -10.512 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.135 0.865 5 N -0.394 5.394 6 C 0.304 3.696 7 O -0.401 6.401 8 C -0.162 4.162 9 C -0.036 4.036 10 C -0.563 4.563 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.542 5.542 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.229 4.229 19 N -0.178 5.178 20 C -0.064 4.064 21 C -0.138 4.138 22 C -0.403 4.403 23 S 0.385 5.615 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.231 0.769 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 19.533 -12.455 -10.527 25.446 hybrid contribution 0.368 0.220 -0.912 1.008 sum 19.901 -12.236 -11.440 26.012 Atomic orbital electron populations 1.21811 0.93458 1.01002 1.04006 1.21965 0.98093 0.94029 1.02383 1.19381 0.83700 0.95419 0.90405 0.86512 1.46336 1.18201 1.59858 1.14978 1.21519 0.79932 0.76828 0.91297 1.90676 1.50687 1.57812 1.40970 1.21698 1.01913 1.00107 0.92486 1.19369 0.89962 0.96381 0.97840 1.21108 1.01060 1.35687 0.98466 0.90945 1.24972 0.98041 0.94570 0.95649 1.69909 1.21193 1.37591 1.25552 0.86797 0.81185 0.77524 0.84059 1.20237 1.21475 1.18486 1.27190 1.01142 1.02203 0.92392 1.66070 1.07167 1.16762 1.27777 1.20358 0.89245 1.00770 0.96064 1.20370 0.96958 1.02518 0.93975 1.26860 1.03829 1.12769 0.96876 1.83980 0.97525 1.62795 1.17184 0.91790 0.91577 0.93173 0.91556 0.90983 0.76904 0.89467 0.89514 0.95766 0.96177 0.92714 0.90571 0.90401 0.90645 0.80465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.51 37.16 0.32 -1.64 16 2 C -0.12 -1.43 5.59 -26.74 -0.15 -1.58 16 3 C 0.22 2.82 2.76 -69.08 -0.19 2.63 16 4 H 0.12 1.76 7.58 -51.93 -0.39 1.37 16 5 N -0.74 -9.88 5.01 -54.94 -0.28 -10.15 16 6 C 0.52 8.96 6.40 -10.99 -0.07 8.89 16 7 O -0.53 -10.84 13.12 5.56 0.07 -10.77 16 8 C -0.12 -2.30 5.64 -27.88 -0.16 -2.46 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 10 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 11 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 14 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 17 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 18 C 0.05 0.59 6.30 -13.46 -0.08 0.50 16 19 N -0.46 -5.87 10.53 -8.06 -0.08 -5.96 16 20 C 0.07 0.69 6.74 -84.23 -0.57 0.13 16 21 C -0.08 -0.56 10.31 36.01 0.37 -0.19 16 22 C -0.26 -2.28 11.13 29.12 0.32 -1.95 16 23 S 0.13 1.19 22.28 -107.50 -2.39 -1.21 16 24 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 25 H 0.07 1.04 5.64 -51.93 -0.29 0.74 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.40 4.38 7.79 -40.82 -0.32 4.06 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 33 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 38 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -33.49 327.98 -7.93 -41.43 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.56 Total: 0.08 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.73 Total: -9.00 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.41 Total: -43.29 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.39 Total: -1.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.49 -7.93 -41.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291768874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.625 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds