Wall clock time and date at job start Tue Mar 31 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 6 6 C 1.34776 * 120.00080 * 275.00208 * 5 3 2 7 7 O 1.21276 * 120.00121 * 0.02562 * 6 5 3 8 8 C 1.50698 * 119.99878 * 179.97438 * 6 5 3 9 9 C 1.53003 * 109.47304 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47304 * 179.97438 * 9 8 6 11 11 H 1.08003 * 120.00078 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99945 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99984 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99687 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46834 * 90.00545 * 14 12 10 16 16 H 1.48500 * 109.46822 * 210.00326 * 14 12 10 17 17 H 1.48495 * 109.47381 * 330.00442 * 14 12 10 18 18 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 19 19 N 1.29018 * 124.91880 * 104.71662 * 18 3 2 20 20 C 1.31786 * 117.12676 * 179.81782 * 19 18 3 21 21 C 1.50699 * 122.75129 * 180.22541 * 20 19 18 22 22 C 1.33632 * 114.49681 * 0.47589 * 20 19 18 23 23 S 1.70978 * 124.91631 * 285.03082 * 18 3 2 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.97001 * 119.99703 * 95.00546 * 5 3 2 30 30 H 1.08998 * 109.47466 * 299.99891 * 8 6 5 31 31 H 1.09003 * 109.47620 * 60.00219 * 8 6 5 32 32 H 1.08998 * 109.46959 * 300.00432 * 9 8 6 33 33 H 1.08999 * 109.46826 * 60.00009 * 9 8 6 34 34 H 0.96999 * 119.99873 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.47308 * 270.24769 * 21 20 19 36 36 H 1.09002 * 109.47094 * 30.24716 * 21 20 19 37 37 H 1.08992 * 109.47258 * 150.24332 * 21 20 19 38 38 H 1.08009 * 126.03466 * 179.78605 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6643 1.3670 7 8 -0.3395 2.6319 0.4345 8 6 0.0363 3.3376 2.6549 9 6 -1.3824 3.8946 2.5211 10 6 -1.7815 4.5673 3.8092 11 1 -1.0920 4.5952 4.6401 12 6 -3.0268 5.1472 3.9271 13 7 -3.3749 5.7347 5.0510 14 14 -4.2190 5.0996 2.4898 15 1 -5.0546 3.8753 2.5802 16 1 -5.0929 6.2996 2.5316 17 1 -3.4574 5.0860 1.2151 18 6 3.5419 1.4443 -0.1238 19 7 4.1942 1.7436 -1.1960 20 6 5.5097 1.6984 -1.1314 21 6 6.3954 2.0278 -2.3053 22 6 5.9937 1.3314 0.0589 23 16 4.6281 1.0427 1.1341 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.2720 2.1231 1.9978 30 1 0.0673 2.6129 3.4685 31 1 0.7277 4.1529 2.8680 32 1 -1.4129 4.6194 1.7076 33 1 -2.0740 3.0796 2.3078 34 1 -4.2509 6.1430 5.1338 35 1 6.5858 1.1228 -2.8821 36 1 5.9007 2.7646 -2.9382 37 1 7.3402 2.4344 -1.9448 38 1 7.0378 1.2302 0.3164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291768874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:44 Heat of formation + Delta-G solvation = -32.822370 kcal Electronic energy + Delta-G solvation = -19549.725571 eV Core-core repulsion = 16517.554853 eV Total energy + Delta-G solvation = -3032.170718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36195 -40.63231 -37.25073 -35.50976 -33.81535 -32.94348 -32.80049 -29.20745 -28.49999 -27.52285 -24.30296 -23.52487 -22.06796 -21.59720 -20.41346 -19.28320 -18.80429 -17.66826 -17.25306 -16.87941 -16.31713 -16.05167 -15.88435 -15.28830 -14.96885 -14.69733 -14.59599 -14.41679 -14.00328 -13.70473 -13.41254 -13.36994 -13.24973 -12.88686 -12.66604 -12.55267 -12.29573 -12.07347 -11.96849 -11.90057 -11.73148 -11.38458 -10.80211 -10.76839 -10.71865 -10.48401 -10.19790 -9.71588 -8.30436 -6.33055 -0.39381 0.29039 0.69884 1.34169 1.36421 1.51215 1.60915 1.69132 2.08290 2.35927 2.94757 3.05640 3.73136 3.89313 3.96814 4.05842 4.24293 4.31439 4.39274 4.42378 4.49997 4.57117 4.76091 4.79609 4.81394 4.91188 4.96190 4.99140 5.08478 5.28602 5.33039 5.41189 5.43029 5.46704 5.62533 6.24403 6.43580 6.70804 6.73631 7.23642 7.32288 8.85287 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.003559 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.164207 B = 7866.320161 C = 8142.619323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.223 3.777 4 H 0.088 0.912 5 N -0.719 5.719 6 C 0.522 3.478 7 O -0.563 6.563 8 C -0.117 4.117 9 C 0.006 3.994 10 C -0.528 4.528 11 H 0.050 0.950 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.261 1.261 18 C 0.020 3.980 19 N -0.492 5.492 20 C 0.042 3.958 21 C -0.077 4.077 22 C -0.251 4.251 23 S 0.171 5.829 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.410 0.590 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.009 0.991 33 H 0.012 0.988 34 H 0.267 0.733 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.830 -13.743 -10.906 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.115 3.885 4 H 0.106 0.894 5 N -0.374 5.374 6 C 0.311 3.689 7 O -0.441 6.441 8 C -0.157 4.157 9 C -0.032 4.032 10 C -0.566 4.566 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.585 5.585 14 Si 0.762 3.238 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.185 1.185 18 C -0.258 4.258 19 N -0.208 5.208 20 C -0.090 4.090 21 C -0.136 4.136 22 C -0.390 4.390 23 S 0.426 5.574 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.247 0.753 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.028 0.972 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 21.724 -13.834 -10.911 27.970 hybrid contribution -0.156 0.626 -0.731 0.975 sum 21.568 -13.208 -11.642 27.841 Atomic orbital electron populations 1.21746 0.94958 1.01432 1.01823 1.21910 0.96541 0.93358 1.03832 1.19258 0.84981 0.95621 0.88633 0.89424 1.46032 1.16977 1.58505 1.15860 1.21101 0.80794 0.76868 0.90164 1.90673 1.52094 1.59437 1.41891 1.21521 0.98889 1.01157 0.94106 1.19213 0.93307 0.95527 0.95111 1.21439 1.00583 1.35267 0.99308 0.93141 1.25796 1.00044 0.94524 0.98053 1.70021 1.22010 1.38966 1.27506 0.85837 0.79140 0.78064 0.80723 1.19278 1.20573 1.18535 1.26863 1.00732 1.04360 0.93813 1.66054 1.08684 1.17206 1.28845 1.20803 0.88712 1.01750 0.97701 1.20453 0.97252 1.02785 0.93119 1.27327 1.05239 1.10513 0.95962 1.83781 0.96608 1.61496 1.15498 0.93793 0.93910 0.91379 0.89664 0.89820 0.75266 0.87587 0.88150 0.97221 0.96943 0.92419 0.89588 0.91563 0.88329 0.77256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.51 71.98 0.61 -3.15 16 2 C -0.12 -2.53 5.59 30.59 0.17 -2.36 16 3 C 0.22 5.60 2.76 44.24 0.12 5.72 16 4 H 0.09 2.73 7.58 -2.39 -0.02 2.71 16 5 N -0.72 -18.45 5.01 -446.11 -2.24 -20.68 16 6 C 0.52 17.95 6.40 87.66 0.56 18.51 16 7 O -0.56 -23.51 13.12 -3.02 -0.04 -23.55 16 8 C -0.12 -4.32 5.64 29.85 0.17 -4.15 16 9 C 0.01 0.31 3.33 29.85 0.10 0.41 16 10 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 11 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 12 C 0.01 0.80 5.47 84.66 0.46 1.26 16 13 N -0.94 -59.15 13.96 21.45 0.30 -58.85 16 14 Si 0.94 46.75 27.47 68.60 1.88 48.64 16 15 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 17 H -0.26 -12.94 6.54 99.48 0.65 -12.29 16 18 C 0.02 0.44 6.30 88.52 0.56 1.00 16 19 N -0.49 -11.98 10.53 -179.41 -1.89 -13.87 16 20 C 0.04 0.77 6.74 41.52 0.28 1.05 16 21 C -0.08 -0.95 10.31 71.24 0.73 -0.21 16 22 C -0.25 -3.49 11.13 66.77 0.74 -2.75 16 23 S 0.17 2.64 22.28 -56.49 -1.26 1.38 16 24 H 0.04 1.31 7.85 -2.39 -0.02 1.30 16 25 H 0.04 1.33 5.64 -2.39 -0.01 1.31 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.41 8.22 7.79 -92.71 -0.72 7.49 16 30 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.01 0.49 7.16 -2.39 -0.02 0.47 16 33 H 0.01 0.62 7.53 -2.39 -0.02 0.60 16 34 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.71 8.12 -2.39 -0.02 0.69 16 38 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -73.51 327.98 1.80 -71.71 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.28 Total: 9.91 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 4.76 Total: -14.68 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.83 Total: -93.41 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.04 Total: -23.55 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.88 Total: 48.64 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.26 Total: 1.38 kcal Total: -73.51 1.80 -71.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291768874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.887 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds