Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46889 * 2 1 4 4 N 1.29025 * 124.91855 * 90.00380 * 3 2 1 5 5 C 1.31785 * 117.12780 * 180.02562 * 4 3 2 6 6 C 1.50696 * 122.74916 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46984 * 145.02446 * 6 5 4 8 8 C 1.53008 * 109.46920 * 265.02158 * 6 5 4 9 9 N 1.46499 * 109.47278 * 25.01997 * 6 5 4 10 10 C 1.34777 * 119.99665 * 155.27952 * 9 6 5 11 11 O 1.21283 * 119.99990 * 359.71991 * 10 9 6 12 12 C 1.50698 * 119.99538 * 179.72653 * 10 9 6 13 13 C 1.52999 * 109.47004 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47522 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99446 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00275 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99887 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99895 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47152 * 89.99529 * 18 16 14 20 20 H 1.48501 * 109.46639 * 209.99684 * 18 16 14 21 21 H 1.48502 * 109.47002 * 329.99588 * 18 16 14 22 22 C 1.33640 * 114.49562 * 0.22744 * 5 4 3 23 23 S 1.70979 * 124.91563 * 269.99879 * 3 2 1 24 24 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47277 * 300.00015 * 1 2 3 26 26 H 1.08998 * 109.47204 * 60.00431 * 1 2 3 27 27 H 1.09006 * 109.47221 * 240.00224 * 2 1 3 28 28 H 1.08999 * 109.47648 * 119.99866 * 2 1 3 29 29 H 1.08995 * 109.47066 * 180.02562 * 8 6 5 30 30 H 1.09005 * 109.46722 * 300.00150 * 8 6 5 31 31 H 1.09000 * 109.47169 * 59.99791 * 8 6 5 32 32 H 0.97001 * 119.99790 * 334.99665 * 9 6 5 33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 35 35 H 1.09000 * 109.47527 * 299.99994 * 13 12 10 36 36 H 1.09007 * 109.47302 * 59.99534 * 13 12 10 37 37 H 0.96995 * 119.99958 * 180.02562 * 17 16 14 38 38 H 1.08000 * 126.03251 * 179.77589 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7132 3.3483 0.8793 6 6 3.0391 4.2720 2.0245 7 1 3.8862 4.9020 1.7534 8 6 1.8259 5.1527 2.3306 9 7 3.3788 3.4800 3.2092 10 6 4.1607 4.0084 4.1715 11 8 4.5872 5.1377 4.0542 12 6 4.5051 3.1959 5.3930 13 6 5.3982 4.0227 6.3203 14 6 5.7422 3.2105 7.5422 15 1 5.3621 2.2049 7.6467 16 6 6.5428 3.7506 8.5262 17 7 6.8434 3.0416 9.5923 18 14 7.2006 5.4896 8.3450 19 1 6.2395 6.4477 8.9478 20 1 8.5091 5.5985 9.0387 21 1 7.3763 5.8048 6.9045 22 6 2.8361 3.7123 -0.4007 23 16 2.3585 2.3435 -1.4020 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0618 5.8211 3.1586 30 1 1.5731 5.7420 1.4490 31 1 0.9787 4.5227 2.6016 32 1 3.0377 2.5768 3.3030 33 1 3.5896 2.9232 5.9180 34 1 5.0338 2.2919 5.0911 35 1 6.3137 4.2952 5.7952 36 1 4.8698 4.9270 6.6224 37 1 7.4063 3.4217 10.2847 38 1 3.1713 4.6747 -0.7581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291808984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = -13.693515 kcal Electronic energy + Delta-G solvation = -19277.255884 eV Core-core repulsion = 16245.914655 eV Total energy + Delta-G solvation = -3031.341229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52570 -39.02530 -35.57622 -33.90606 -33.41761 -31.58413 -30.70980 -28.98201 -26.29715 -25.81019 -24.09576 -21.88125 -20.95677 -20.04031 -19.51753 -18.03287 -17.20217 -16.17123 -15.58391 -15.53892 -15.19842 -14.86384 -14.62623 -14.15869 -13.93475 -13.48786 -13.41023 -13.08857 -12.63150 -12.51623 -12.48915 -12.18228 -12.07579 -11.76376 -11.54254 -11.36652 -11.27246 -10.91702 -10.11214 -9.99480 -9.93476 -9.74524 -9.70018 -9.20968 -9.13399 -9.06112 -8.77210 -8.46844 -5.99267 -3.97587 0.40397 1.04944 1.40851 2.47164 3.18644 3.40768 3.46800 3.49395 3.58493 3.72159 4.42090 4.54438 4.68218 4.80625 4.85561 5.07202 5.14456 5.19905 5.28101 5.36275 5.42247 5.46272 5.55135 5.61690 5.75171 5.83939 5.91887 6.14688 6.16641 6.18476 6.68318 6.77272 7.41476 7.46576 7.49015 7.82546 7.92250 8.54942 8.72976 9.04376 9.63937 11.13680 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028254 B = 0.003268 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.765428 B = 8565.795450 C = 9141.774906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.057 3.943 4 N -0.465 5.465 5 C 0.070 3.930 6 C 0.218 3.782 7 H 0.101 0.899 8 C -0.157 4.157 9 N -0.729 5.729 10 C 0.512 3.488 11 O -0.544 6.544 12 C -0.121 4.121 13 C 0.002 3.998 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.068 3.932 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C -0.254 4.254 23 S 0.117 5.883 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.408 0.592 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -4.000 -25.540 29.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.222 4.222 4 N -0.180 5.180 5 C -0.062 4.062 6 C 0.109 3.891 7 H 0.119 0.881 8 C -0.215 4.215 9 N -0.384 5.384 10 C 0.300 3.700 11 O -0.421 6.421 12 C -0.161 4.161 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.544 5.544 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.393 4.393 23 S 0.372 5.628 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.243 0.757 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -13.545 -3.607 -26.028 29.562 hybrid contribution 0.417 1.064 0.670 1.325 sum -13.128 -2.544 -25.358 28.667 Atomic orbital electron populations 1.21766 0.93368 1.02685 1.02691 1.20256 0.96803 0.87370 1.04525 1.27089 1.02468 1.01802 0.90807 1.65917 1.14684 1.05588 1.31781 1.20379 1.00206 0.91433 0.94215 1.19324 0.98284 0.89735 0.81708 0.88125 1.22165 0.97271 0.99589 1.02513 1.46138 1.53106 1.18926 1.20181 1.21551 0.76332 0.87690 0.84384 1.90637 1.52992 1.19607 1.78829 1.21653 1.02265 0.99578 0.92620 1.19365 0.94732 0.95362 0.94115 1.21133 1.31004 1.01867 1.02155 0.90940 1.24976 0.95684 0.97684 0.94946 1.69914 1.37885 1.37346 1.09215 0.86789 0.78317 0.85236 0.79180 1.20255 1.21493 1.18515 1.26723 1.12474 1.04574 0.95561 1.83925 1.60698 1.05332 1.12819 0.91273 0.91791 0.92497 0.89625 0.88425 0.90894 0.91893 0.92189 0.75655 0.89601 0.89659 0.95858 0.96271 0.92762 0.80351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.47 16 2 C -0.05 -0.32 6.52 -27.88 -0.18 -0.50 16 3 C 0.06 0.53 6.64 -13.46 -0.09 0.44 16 4 N -0.47 -5.43 9.52 -8.06 -0.08 -5.51 16 5 C 0.07 0.82 5.80 -84.23 -0.49 0.33 16 6 C 0.22 2.88 2.91 -69.08 -0.20 2.68 16 7 H 0.10 1.42 7.58 -51.93 -0.39 1.03 16 8 C -0.16 -1.87 9.46 37.16 0.35 -1.52 16 9 N -0.73 -11.03 5.06 -54.93 -0.28 -11.31 16 10 C 0.51 9.77 7.79 -10.99 -0.09 9.68 16 11 O -0.54 -12.20 15.65 5.55 0.09 -12.11 16 12 C -0.12 -2.47 5.64 -27.88 -0.16 -2.62 16 13 C 0.00 0.06 3.33 -27.88 -0.09 -0.04 16 14 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 18 Si 0.88 22.95 27.47 -169.99 -4.67 18.28 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 22 C -0.25 -2.42 11.14 29.12 0.32 -2.10 16 23 S 0.12 0.93 23.18 -107.50 -2.49 -1.56 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.41 5.65 7.81 -40.82 -0.32 5.33 16 33 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 36 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 37 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -34.49 335.70 -7.99 -42.49 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.71 Total: 0.15 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.68 Total: -7.80 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.42 Total: -44.50 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.28 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.49 -7.99 -42.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291808984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.791 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds