Wall clock time and date at job start Tue Mar 31 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46697 * 90.00078 * 5 4 3 7 7 N 1.46507 * 109.47017 * 180.02562 * 6 5 4 8 8 C 1.34767 * 120.00021 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00414 * 359.97438 * 8 7 6 10 10 C 1.50705 * 120.00082 * 179.97438 * 8 7 6 11 11 C 1.52994 * 109.47200 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.47200 * 180.02562 * 11 10 8 13 13 H 1.08008 * 119.99656 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00014 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99568 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00259 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47455 * 89.99846 * 16 14 12 18 18 H 1.48505 * 109.46833 * 210.00278 * 16 14 12 19 19 H 1.48508 * 109.47075 * 329.99550 * 16 14 12 20 20 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 21 21 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 22 22 C 1.50700 * 126.03597 * 0.25055 * 21 2 1 23 23 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 24 24 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 25 25 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 26 26 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 27 27 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 28 28 H 1.09005 * 109.47501 * 299.99332 * 6 5 4 29 29 H 1.08989 * 109.47322 * 60.00086 * 6 5 4 30 30 H 0.97002 * 119.99221 * 359.97438 * 7 6 5 31 31 H 1.09007 * 109.46925 * 299.99739 * 10 8 7 32 32 H 1.09006 * 109.47123 * 59.99407 * 10 8 7 33 33 H 1.08998 * 109.47405 * 300.00074 * 11 10 8 34 34 H 1.09002 * 109.47579 * 60.00243 * 11 10 8 35 35 H 0.97000 * 119.99281 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.47176 * 90.00027 * 22 21 2 37 37 H 1.09000 * 109.46916 * 209.99905 * 22 21 2 38 38 H 1.08999 * 109.47044 * 329.99869 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 6 4.8092 2.5190 1.4485 7 7 5.7610 3.6328 1.4490 8 6 6.1947 4.1481 2.6163 9 8 5.7967 3.6901 3.6665 10 6 7.1741 5.2934 2.6168 11 6 7.4998 5.6853 4.0594 12 6 8.4788 6.8311 4.0599 13 1 8.8336 7.2387 3.1247 14 6 8.9224 7.3583 5.2542 15 7 9.7771 8.3579 5.2545 16 14 8.3105 6.6520 6.8716 17 1 9.2130 5.5558 7.3060 18 1 8.2957 7.7196 7.9037 19 1 6.9361 6.1194 6.6907 20 16 3.9332 -0.6730 0.0121 21 6 2.2300 -1.1239 0.0058 22 6 1.6847 -2.5288 0.0078 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 5.3979 1.8233 -0.5034 27 1 4.0453 2.9803 -0.5122 28 1 3.8947 2.8230 1.9579 29 1 5.2474 1.6661 1.9666 30 1 6.0795 3.9988 0.6090 31 1 8.0886 4.9897 2.1072 32 1 6.7358 6.1466 2.0990 33 1 6.5853 5.9892 4.5687 34 1 7.9380 4.8324 4.5776 35 1 10.0889 8.7290 6.0947 36 1 1.5570 -2.8705 -1.0194 37 1 2.3811 -3.1881 0.5260 38 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291948113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:02 Heat of formation + Delta-G solvation = -18.911194 kcal Electronic energy + Delta-G solvation = -18602.385461 eV Core-core repulsion = 15570.817977 eV Total energy + Delta-G solvation = -3031.567484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30796 -39.25815 -35.77391 -33.73822 -33.45960 -31.54971 -30.86853 -29.79526 -26.60898 -25.45454 -24.38050 -22.20217 -21.19207 -19.73850 -19.17465 -18.19533 -17.19152 -16.13895 -15.95682 -15.55334 -15.29844 -15.01239 -14.40143 -14.07883 -13.80185 -13.48533 -13.44657 -13.25982 -13.11554 -12.83085 -12.60233 -12.54283 -12.35150 -12.01962 -11.57109 -11.41566 -11.39842 -10.93959 -10.15043 -10.03090 -9.92719 -9.76860 -9.51936 -9.26599 -9.15991 -8.91881 -8.88179 -8.49088 -6.01604 -4.00217 0.35139 1.00060 1.41615 2.43467 3.12916 3.31082 3.39450 3.45961 3.57396 3.85298 4.50879 4.52592 4.60553 4.66601 4.70433 4.78646 4.98488 5.06990 5.19909 5.25509 5.33973 5.40770 5.42903 5.46163 5.55312 5.71144 5.84833 5.97194 6.09485 6.11516 6.56271 6.71017 7.38284 7.45293 7.45446 7.74430 7.81115 8.51368 8.65504 9.01506 9.61596 11.11206 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038636 B = 0.002565 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.531068 B =10912.474719 C =11049.998537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.061 3.939 3 N -0.464 5.464 4 C 0.055 3.945 5 C -0.055 4.055 6 C 0.127 3.873 7 N -0.742 5.742 8 C 0.511 3.489 9 O -0.539 6.539 10 C -0.121 4.121 11 C 0.001 3.999 12 C -0.524 4.524 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.261 1.261 20 S 0.124 5.876 21 C -0.231 4.231 22 C -0.074 4.074 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.400 0.600 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 -21.628 -16.009 31.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 N -0.178 5.178 4 C -0.224 4.224 5 C -0.096 4.096 6 C 0.001 3.999 7 N -0.397 5.397 8 C 0.299 3.701 9 O -0.415 6.415 10 C -0.161 4.161 11 C -0.037 4.037 12 C -0.562 4.562 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.543 5.543 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.185 1.185 20 S 0.380 5.620 21 C -0.352 4.352 22 C -0.133 4.133 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.234 0.766 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.821 -21.849 -15.105 30.917 hybrid contribution -0.916 -0.080 0.410 1.007 sum -16.737 -21.929 -14.694 31.256 Atomic orbital electron populations 1.20369 0.87111 1.03417 1.02850 1.20184 0.98209 0.86165 1.02551 1.66121 1.04447 1.31645 1.15586 1.26582 0.93966 0.97875 1.03969 1.20440 0.96082 0.94631 0.98453 1.21155 0.93899 0.90393 0.94408 1.46108 1.47595 1.36449 1.09518 1.21562 0.81619 0.84258 0.82659 1.90661 1.57813 1.61531 1.31489 1.21671 0.96784 0.94383 1.03294 1.19376 0.97307 0.96787 0.90251 1.21117 1.25070 1.15482 0.94565 0.90910 1.24977 0.94484 0.94590 0.99248 1.69918 1.32216 1.25198 1.26941 0.86792 0.80612 0.78757 0.83378 1.20249 1.21455 1.18518 1.84022 1.06702 1.02796 1.68453 1.25725 0.95187 1.01059 1.13196 1.20245 1.01226 0.88984 1.02848 0.90673 0.90695 0.90500 0.88830 0.87905 0.91077 0.91545 0.76591 0.89540 0.89499 0.95815 0.96273 0.92736 0.90556 0.91080 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.06 36.01 0.36 -0.20 16 2 C 0.06 0.61 6.74 -84.22 -0.57 0.05 16 3 N -0.46 -5.54 10.53 -8.06 -0.08 -5.62 16 4 C 0.05 0.57 6.64 -13.45 -0.09 0.49 16 5 C -0.05 -0.49 5.91 -27.88 -0.16 -0.66 16 6 C 0.13 1.54 5.66 -4.04 -0.02 1.52 16 7 N -0.74 -9.69 5.56 -60.29 -0.33 -10.02 16 8 C 0.51 9.34 7.83 -10.99 -0.09 9.25 16 9 O -0.54 -12.21 15.98 5.56 0.09 -12.12 16 10 C -0.12 -2.34 5.64 -27.88 -0.16 -2.50 16 11 C 0.00 0.02 3.33 -27.88 -0.09 -0.08 16 12 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 13 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 16 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 20 S 0.12 1.11 23.18 -107.50 -2.49 -1.38 16 21 C -0.23 -2.02 6.59 -35.92 -0.24 -2.26 16 22 C -0.07 -0.40 10.10 36.01 0.36 -0.04 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.39 6.71 -51.92 -0.35 0.04 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.86 8.14 -51.94 -0.42 0.44 16 30 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 34 H 0.02 0.49 7.52 -51.93 -0.39 0.10 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.35 6.75 -51.93 -0.35 0.00 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -35.97 335.40 -8.41 -44.37 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.62 Total: -3.11 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.12 Total: -7.92 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.35 Total: -43.04 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.97 -8.41 -44.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291948113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.463 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds