Wall clock time and date at job start Tue Mar 31 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46697 * 90.00078 * 5 4 3 7 7 N 1.46507 * 109.47017 * 180.02562 * 6 5 4 8 8 C 1.34767 * 120.00021 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00414 * 359.97438 * 8 7 6 10 10 C 1.50705 * 120.00082 * 179.97438 * 8 7 6 11 11 C 1.52994 * 109.47200 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.47200 * 180.02562 * 11 10 8 13 13 H 1.08008 * 119.99656 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00014 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99568 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00259 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47455 * 89.99846 * 16 14 12 18 18 H 1.48505 * 109.46833 * 210.00278 * 16 14 12 19 19 H 1.48508 * 109.47075 * 329.99550 * 16 14 12 20 20 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 21 21 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 22 22 C 1.50700 * 126.03597 * 0.25055 * 21 2 1 23 23 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 24 24 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 25 25 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 26 26 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 27 27 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 28 28 H 1.09005 * 109.47501 * 299.99332 * 6 5 4 29 29 H 1.08989 * 109.47322 * 60.00086 * 6 5 4 30 30 H 0.97002 * 119.99221 * 359.97438 * 7 6 5 31 31 H 1.09007 * 109.46925 * 299.99739 * 10 8 7 32 32 H 1.09006 * 109.47123 * 59.99407 * 10 8 7 33 33 H 1.08998 * 109.47405 * 300.00074 * 11 10 8 34 34 H 1.09002 * 109.47579 * 60.00243 * 11 10 8 35 35 H 0.97000 * 119.99281 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.47176 * 90.00027 * 22 21 2 37 37 H 1.09000 * 109.46916 * 209.99905 * 22 21 2 38 38 H 1.08999 * 109.47044 * 329.99869 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 6 4.8092 2.5190 1.4485 7 7 5.7610 3.6328 1.4490 8 6 6.1947 4.1481 2.6163 9 8 5.7967 3.6901 3.6665 10 6 7.1741 5.2934 2.6168 11 6 7.4998 5.6853 4.0594 12 6 8.4788 6.8311 4.0599 13 1 8.8336 7.2387 3.1247 14 6 8.9224 7.3583 5.2542 15 7 9.7771 8.3579 5.2545 16 14 8.3105 6.6520 6.8716 17 1 9.2130 5.5558 7.3060 18 1 8.2957 7.7196 7.9037 19 1 6.9361 6.1194 6.6907 20 16 3.9332 -0.6730 0.0121 21 6 2.2300 -1.1239 0.0058 22 6 1.6847 -2.5288 0.0078 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 5.3979 1.8233 -0.5034 27 1 4.0453 2.9803 -0.5122 28 1 3.8947 2.8230 1.9579 29 1 5.2474 1.6661 1.9666 30 1 6.0795 3.9988 0.6090 31 1 8.0886 4.9897 2.1072 32 1 6.7358 6.1466 2.0990 33 1 6.5853 5.9892 4.5687 34 1 7.9380 4.8324 4.5776 35 1 10.0889 8.7290 6.0947 36 1 1.5570 -2.8705 -1.0194 37 1 2.3811 -3.1881 0.5260 38 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291948113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:01 Heat of formation + Delta-G solvation = -44.261877 kcal Electronic energy + Delta-G solvation = -18603.484750 eV Core-core repulsion = 15570.817977 eV Total energy + Delta-G solvation = -3032.666772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05479 -40.64793 -36.84860 -35.52598 -34.58206 -33.35028 -31.92665 -30.42666 -28.25930 -26.29397 -25.37905 -23.24984 -22.76079 -21.22642 -19.89097 -19.23839 -18.84323 -17.57589 -17.20238 -16.81450 -16.25881 -16.03655 -15.78280 -15.59312 -14.88742 -14.60542 -14.41566 -14.30592 -13.94886 -13.92273 -13.69413 -13.58220 -13.39515 -12.96028 -12.88344 -12.80644 -12.43430 -12.09574 -12.02595 -11.96158 -11.76321 -11.39258 -10.86201 -10.77667 -10.62965 -10.23098 -10.11749 -9.56652 -8.31165 -6.33690 -0.34891 0.33441 0.72155 1.33065 1.35141 1.50376 1.67670 1.69814 2.19620 2.35265 3.04555 3.12250 3.76387 3.91335 4.01364 4.02556 4.06538 4.13486 4.41054 4.46496 4.51628 4.56749 4.65476 4.74207 4.77164 4.86004 4.94142 5.02576 5.02801 5.04016 5.32000 5.39696 5.43837 5.45855 5.61894 6.24105 6.57793 6.72867 6.74895 7.30024 7.31750 8.84413 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038636 B = 0.002565 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.531068 B =10912.474719 C =11049.998537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.032 3.968 3 N -0.493 5.493 4 C 0.033 3.967 5 C -0.044 4.044 6 C 0.132 3.868 7 N -0.716 5.716 8 C 0.514 3.486 9 O -0.589 6.589 10 C -0.115 4.115 11 C 0.003 3.997 12 C -0.527 4.527 13 H 0.052 0.948 14 C 0.013 3.987 15 N -0.943 5.943 16 Si 0.938 3.062 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 S 0.139 5.861 21 C -0.228 4.228 22 C -0.076 4.076 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.421 0.579 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.008 0.992 34 H 0.009 0.991 35 H 0.267 0.733 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 -23.506 -17.077 33.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 N -0.208 5.208 4 C -0.245 4.245 5 C -0.085 4.085 6 C 0.006 3.994 7 N -0.370 5.370 8 C 0.303 3.697 9 O -0.469 6.469 10 C -0.155 4.155 11 C -0.035 4.035 12 C -0.566 4.566 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.584 5.584 16 Si 0.762 3.238 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.188 1.188 20 S 0.395 5.605 21 C -0.349 4.349 22 C -0.135 4.135 23 H 0.103 0.897 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.259 0.741 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.645 -23.730 -16.241 33.226 hybrid contribution -0.672 0.464 0.646 1.042 sum -17.318 -23.266 -15.595 32.930 Atomic orbital electron populations 1.20440 0.85572 1.03867 1.03643 1.20635 0.99484 0.86222 1.03541 1.66137 1.05326 1.33075 1.16302 1.26771 0.93964 0.98993 1.04778 1.20390 0.97112 0.94786 0.96194 1.21129 0.92335 0.89366 0.96553 1.45785 1.46440 1.35824 1.08950 1.21264 0.81316 0.83919 0.83236 1.90648 1.59660 1.63058 1.33504 1.21502 0.98423 0.95753 0.99824 1.19240 0.95370 0.94925 0.93974 1.21438 1.25212 1.16133 0.93768 0.92927 1.25800 0.94829 0.95044 1.02819 1.70026 1.33674 1.26634 1.28043 0.85840 0.79892 0.78423 0.79620 1.19312 1.20377 1.18775 1.83900 1.07042 1.01682 1.67914 1.26191 0.94937 1.02277 1.11480 1.20408 1.01913 0.87047 1.04090 0.89675 0.88665 0.91612 0.86104 0.87095 0.93343 0.92234 0.74131 0.87439 0.87727 0.97393 0.97308 0.92398 0.89071 0.90378 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.06 71.24 0.72 -0.29 16 2 C 0.03 0.62 6.74 41.52 0.28 0.90 16 3 N -0.49 -11.48 10.53 -179.40 -1.89 -13.37 16 4 C 0.03 0.65 6.64 88.52 0.59 1.24 16 5 C -0.04 -0.70 5.91 29.85 0.18 -0.53 16 6 C 0.13 3.05 5.66 86.38 0.49 3.54 16 7 N -0.72 -17.28 5.56 -463.05 -2.57 -19.85 16 8 C 0.51 18.20 7.83 87.66 0.69 18.89 16 9 O -0.59 -26.60 15.98 -3.03 -0.05 -26.64 16 10 C -0.12 -4.29 5.64 29.85 0.17 -4.12 16 11 C 0.00 0.15 3.33 29.85 0.10 0.25 16 12 C -0.53 -30.50 9.66 25.60 0.25 -30.26 16 13 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 14 C 0.01 0.76 5.47 84.65 0.46 1.22 16 15 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 16 Si 0.94 47.26 27.47 68.60 1.88 49.14 16 17 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.26 -13.28 6.54 99.48 0.65 -12.63 16 20 S 0.14 2.27 23.18 -56.49 -1.31 0.96 16 21 C -0.23 -3.62 6.59 24.64 0.16 -3.45 16 22 C -0.08 -0.64 10.10 71.24 0.72 0.08 16 23 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.80 6.71 -2.38 -0.02 0.78 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.42 6.76 8.47 -92.71 -0.79 5.97 16 31 H 0.11 3.54 8.14 -2.38 -0.02 3.52 16 32 H 0.10 3.51 8.14 -2.38 -0.02 3.50 16 33 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 34 H 0.01 0.44 7.52 -2.39 -0.02 0.43 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 0.55 6.75 -2.39 -0.02 0.53 16 Total: -1.00 -78.59 335.40 1.38 -77.21 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 0.22 Total: 4.07 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 4.80 Total: -12.53 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -4.16 Total: -92.21 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.14 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -78.59 1.38 -77.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291948113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.943 kcal (2) G-P(sol) polarization free energy of solvation -78.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds