Wall clock time and date at job start Tue Mar 31 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09001 * 109.46651 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46983 * 59.96344 * 6 5 4 9 9 C 1.52998 * 109.47605 * 299.96091 * 6 5 4 10 10 N 1.46500 * 109.47000 * 185.00187 * 9 6 5 11 11 C 1.34780 * 119.99675 * 180.02562 * 10 9 6 12 12 O 1.21284 * 119.99683 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00075 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47400 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46944 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00053 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99373 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00508 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99500 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47298 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46867 * 120.00116 * 19 17 15 22 22 H 1.48503 * 109.47001 * 240.00004 * 19 17 15 23 23 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 24 24 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 27 27 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.47327 * 179.97438 * 8 6 5 29 29 H 1.09001 * 109.47213 * 299.99602 * 8 6 5 30 30 H 1.09004 * 109.46919 * 59.99781 * 8 6 5 31 31 H 1.08999 * 109.46900 * 305.00516 * 9 6 5 32 32 H 1.09002 * 109.46931 * 65.00164 * 9 6 5 33 33 H 0.96997 * 120.00131 * 359.97438 * 10 9 6 34 34 H 1.09005 * 109.47053 * 300.00167 * 13 11 10 35 35 H 1.09002 * 109.46919 * 59.99372 * 13 11 10 36 36 H 1.08994 * 109.46993 * 299.99856 * 14 13 11 37 37 H 1.09002 * 109.46931 * 59.99969 * 14 13 11 38 38 H 0.97001 * 120.00168 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3559 -2.0145 -0.0098 8 6 6.0727 -0.4189 1.2478 9 6 6.0737 -0.4067 -1.2507 10 7 7.4172 -0.9873 -1.3147 11 6 8.2399 -0.6714 -2.3345 12 8 7.8677 0.0932 -3.1993 13 6 9.6217 -1.2689 -2.4007 14 6 10.3422 -0.7510 -3.6471 15 6 11.7243 -1.3482 -3.7129 16 1 12.0554 -2.0293 -2.9430 17 6 12.5659 -1.0249 -4.7561 18 7 12.1628 -0.1951 -5.6933 19 14 14.2793 -1.7645 -4.8373 20 1 14.4877 -2.6601 -3.6712 21 1 14.4224 -2.5453 -6.0923 22 1 15.2898 -0.6765 -4.8133 23 16 2.5436 -1.4248 -0.0077 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5091 27 1 1.9025 2.0874 -0.0004 28 1 7.1012 -0.7799 1.2466 29 1 6.0700 0.6711 1.2531 30 1 5.5595 -0.7879 2.1358 31 1 5.5117 -0.6921 -2.1400 32 1 6.1492 0.6796 -1.2017 33 1 7.7149 -1.5984 -0.6228 34 1 10.1837 -0.9843 -1.5111 35 1 9.5458 -2.3552 -2.4503 36 1 9.7801 -1.0360 -4.5364 37 1 10.4181 0.3353 -3.5978 38 1 12.7548 0.0321 -6.4274 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291969001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:27 Heat of formation + Delta-G solvation = -19.345343 kcal Electronic energy + Delta-G solvation = -18826.029417 eV Core-core repulsion = 15794.443106 eV Total energy + Delta-G solvation = -3031.586310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16639 -39.10572 -36.31806 -33.43022 -33.33573 -31.94246 -30.84113 -27.35429 -26.90339 -25.31412 -24.52883 -22.23299 -21.32845 -19.82886 -18.88330 -18.36458 -16.85233 -15.96020 -15.75573 -15.42175 -15.21161 -14.90099 -14.41196 -14.29208 -14.05364 -13.50859 -13.46391 -13.13521 -13.00706 -12.84722 -12.25085 -12.16124 -11.91481 -11.55077 -11.44075 -11.28722 -11.12476 -10.92297 -10.56018 -9.92791 -9.83662 -9.63469 -9.51250 -9.16920 -9.06660 -8.93712 -8.75253 -8.29816 -5.93655 -3.97938 0.39147 1.00772 1.43216 2.55934 3.30745 3.34275 3.40795 3.43972 3.49597 3.92198 4.49506 4.52381 4.59415 4.65072 4.76662 4.77530 5.05822 5.09802 5.35490 5.41272 5.43963 5.49746 5.57625 5.63944 5.73554 5.85684 6.00723 6.08696 6.26522 6.27821 6.72631 6.92898 7.48555 7.77613 7.89869 7.91197 8.10374 8.41551 8.82529 9.11177 9.65478 11.17352 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.047484 B = 0.002544 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.526215 B =11003.782808 C =11198.545493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.228 4.228 3 C 0.036 3.964 4 N -0.462 5.462 5 C 0.058 3.942 6 C -0.024 4.024 7 H 0.095 0.905 8 C -0.140 4.140 9 C 0.134 3.866 10 N -0.744 5.744 11 C 0.510 3.490 12 O -0.533 6.533 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 S 0.118 5.882 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.175 0.825 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.397 0.603 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.025 -3.278 16.740 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.349 4.349 3 C -0.115 4.115 4 N -0.175 5.175 5 C -0.221 4.221 6 C -0.046 4.046 7 H 0.113 0.887 8 C -0.199 4.199 9 C 0.009 3.991 10 N -0.399 5.399 11 C 0.298 3.702 12 O -0.408 6.408 13 C -0.169 4.169 14 C -0.002 4.002 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 S 0.374 5.626 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.192 0.808 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.231 0.769 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.000 -3.293 15.919 28.165 hybrid contribution 0.636 0.249 0.217 0.716 sum -22.364 -3.044 16.136 27.745 Atomic orbital electron populations 1.20227 0.86751 1.03509 1.02887 1.26005 1.01664 0.95083 1.12197 1.21732 0.86848 1.00126 1.02813 1.66192 1.17630 1.18558 1.15134 1.26761 1.00138 0.91425 1.03756 1.20053 0.86589 1.00396 0.97585 0.88683 1.21821 1.00070 1.02879 0.95085 1.21152 0.83262 0.99256 0.95469 1.46190 1.14876 1.50446 1.28404 1.21565 0.87695 0.80901 0.80041 1.90681 1.76501 1.35208 1.38391 1.21862 0.90268 1.00828 1.03959 1.18908 0.93769 0.97045 0.90450 1.21264 0.98963 1.27511 1.08673 0.92536 1.25037 0.98492 0.95219 0.95735 1.70008 1.36285 1.34373 1.12165 0.86536 0.84548 0.78982 0.77888 1.19756 1.21047 1.21034 1.83991 0.98729 1.11429 1.68427 0.90575 0.91083 0.90149 0.80829 0.91135 0.91099 0.92354 0.91828 0.90566 0.76940 0.90205 0.90238 0.95829 0.95801 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.42 36.01 0.38 -0.01 16 2 C -0.23 -1.92 6.60 -35.92 -0.24 -2.15 16 3 C 0.04 0.35 11.25 -19.18 -0.22 0.13 16 4 N -0.46 -5.55 10.53 -11.86 -0.12 -5.68 16 5 C 0.06 0.62 5.91 -13.45 -0.08 0.54 16 6 C -0.02 -0.23 2.86 -91.77 -0.26 -0.49 16 7 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 8 C -0.14 -1.23 9.04 37.16 0.34 -0.90 16 9 C 0.13 1.79 5.04 -4.04 -0.02 1.77 16 10 N -0.74 -10.45 5.28 -60.29 -0.32 -10.77 16 11 C 0.51 9.97 7.83 -10.99 -0.09 9.89 16 12 O -0.53 -13.00 15.98 5.55 0.09 -12.91 16 13 C -0.13 -2.63 5.64 -27.89 -0.16 -2.79 16 14 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 15 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.73 13.29 55.43 0.74 -27.00 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 S 0.12 1.03 23.17 -107.50 -2.49 -1.46 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.07 0.55 7.18 -51.93 -0.37 0.18 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.40 4.17 7.65 -40.82 -0.31 3.85 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -35.64 339.06 -8.61 -44.26 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.72 Total: -1.41 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.88 Total: -6.94 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.29 Total: -43.44 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.64 -8.61 -44.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291969001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.913 kcal (2) G-P(sol) polarization free energy of solvation -35.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds