Wall clock time and date at job start Tue Mar 31 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09001 * 109.46651 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46983 * 59.96344 * 6 5 4 9 9 C 1.52998 * 109.47605 * 299.96091 * 6 5 4 10 10 N 1.46500 * 109.47000 * 185.00187 * 9 6 5 11 11 C 1.34780 * 119.99675 * 180.02562 * 10 9 6 12 12 O 1.21284 * 119.99683 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00075 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47400 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46944 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00053 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99373 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00508 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99500 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47298 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46867 * 120.00116 * 19 17 15 22 22 H 1.48503 * 109.47001 * 240.00004 * 19 17 15 23 23 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 24 24 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 27 27 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.47327 * 179.97438 * 8 6 5 29 29 H 1.09001 * 109.47213 * 299.99602 * 8 6 5 30 30 H 1.09004 * 109.46919 * 59.99781 * 8 6 5 31 31 H 1.08999 * 109.46900 * 305.00516 * 9 6 5 32 32 H 1.09002 * 109.46931 * 65.00164 * 9 6 5 33 33 H 0.96997 * 120.00131 * 359.97438 * 10 9 6 34 34 H 1.09005 * 109.47053 * 300.00167 * 13 11 10 35 35 H 1.09002 * 109.46919 * 59.99372 * 13 11 10 36 36 H 1.08994 * 109.46993 * 299.99856 * 14 13 11 37 37 H 1.09002 * 109.46931 * 59.99969 * 14 13 11 38 38 H 0.97001 * 120.00168 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3559 -2.0145 -0.0098 8 6 6.0727 -0.4189 1.2478 9 6 6.0737 -0.4067 -1.2507 10 7 7.4172 -0.9873 -1.3147 11 6 8.2399 -0.6714 -2.3345 12 8 7.8677 0.0932 -3.1993 13 6 9.6217 -1.2689 -2.4007 14 6 10.3422 -0.7510 -3.6471 15 6 11.7243 -1.3482 -3.7129 16 1 12.0554 -2.0293 -2.9430 17 6 12.5659 -1.0249 -4.7561 18 7 12.1628 -0.1951 -5.6933 19 14 14.2793 -1.7645 -4.8373 20 1 14.4877 -2.6601 -3.6712 21 1 14.4224 -2.5453 -6.0923 22 1 15.2898 -0.6765 -4.8133 23 16 2.5436 -1.4248 -0.0077 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5091 27 1 1.9025 2.0874 -0.0004 28 1 7.1012 -0.7799 1.2466 29 1 6.0700 0.6711 1.2531 30 1 5.5595 -0.7879 2.1358 31 1 5.5117 -0.6921 -2.1400 32 1 6.1492 0.6796 -1.2017 33 1 7.7149 -1.5984 -0.6228 34 1 10.1837 -0.9843 -1.5111 35 1 9.5458 -2.3552 -2.4503 36 1 9.7801 -1.0360 -4.5364 37 1 10.4181 0.3353 -3.5978 38 1 12.7548 0.0321 -6.4274 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291969001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:26 Heat of formation + Delta-G solvation = -44.363922 kcal Electronic energy + Delta-G solvation = -18827.114304 eV Core-core repulsion = 15794.443106 eV Total energy + Delta-G solvation = -3032.671197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.03499 -40.52323 -37.41496 -35.54674 -34.40654 -33.07184 -32.49367 -28.44165 -27.99158 -26.78024 -25.41608 -23.64519 -22.64176 -21.34820 -19.71851 -19.16815 -18.73746 -17.46392 -17.08774 -16.73057 -16.44799 -16.15667 -15.73479 -15.47348 -14.86058 -14.80000 -14.38034 -14.17966 -13.99362 -13.86753 -13.61765 -13.53704 -13.21275 -12.84488 -12.73885 -12.45085 -12.37873 -12.19770 -12.05212 -11.90342 -11.62013 -11.27117 -10.81064 -10.57324 -10.55043 -10.20527 -10.09781 -9.73053 -8.16853 -6.30888 -0.31942 0.33023 0.72255 1.43222 1.44854 1.58164 1.72366 1.80504 2.23693 2.45658 3.13848 3.16269 3.72336 3.81679 3.94536 4.04749 4.09808 4.25748 4.34974 4.52874 4.57379 4.65924 4.71322 4.73161 4.85567 4.88142 4.98392 5.04214 5.12048 5.21623 5.34499 5.42930 5.52901 5.64993 5.87248 6.18879 6.61556 6.77195 6.88331 7.35800 7.39636 8.96188 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.047484 B = 0.002544 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.526215 B =11003.782808 C =11198.545493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.221 4.221 3 C 0.009 3.991 4 N -0.494 5.494 5 C 0.031 3.969 6 C -0.014 4.014 7 H 0.123 0.877 8 C -0.136 4.136 9 C 0.139 3.861 10 N -0.714 5.714 11 C 0.511 3.489 12 O -0.592 6.592 13 C -0.117 4.117 14 C 0.040 3.960 15 C -0.540 4.540 16 H 0.079 0.921 17 C -0.010 4.010 18 N -0.939 5.939 19 Si 0.975 3.025 20 H -0.251 1.251 21 H -0.281 1.281 22 H -0.282 1.282 23 S 0.150 5.850 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.187 0.813 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.419 0.581 34 H 0.108 0.892 35 H 0.109 0.891 36 H -0.019 1.019 37 H -0.020 1.020 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.260 -5.648 19.035 30.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.342 4.342 3 C -0.141 4.141 4 N -0.208 5.208 5 C -0.247 4.247 6 C -0.036 4.036 7 H 0.141 0.859 8 C -0.195 4.195 9 C 0.013 3.987 10 N -0.368 5.368 11 C 0.299 3.701 12 O -0.472 6.472 13 C -0.157 4.157 14 C 0.002 3.998 15 C -0.578 4.578 16 H 0.097 0.903 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.799 3.201 20 H -0.174 1.174 21 H -0.207 1.207 22 H -0.208 1.208 23 S 0.405 5.595 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.204 0.796 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.258 0.742 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.000 1.000 37 H -0.001 1.001 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.251 -5.708 18.294 30.131 hybrid contribution 0.564 1.012 -0.483 1.255 sum -22.687 -4.696 17.810 29.222 Atomic orbital electron populations 1.20386 0.84425 1.04538 1.04142 1.26471 1.03199 0.94560 1.09970 1.22016 0.86539 1.01371 1.04189 1.66179 1.19063 1.19750 1.15825 1.26856 1.01098 0.91744 1.04981 1.20022 0.86079 1.01751 0.95780 0.85925 1.21805 1.00926 1.01563 0.95219 1.21101 0.82620 0.97876 0.97066 1.45808 1.14453 1.49479 1.27097 1.21421 0.88021 0.80217 0.80419 1.90668 1.77543 1.37996 1.41005 1.21640 0.90381 1.02234 1.01451 1.18712 0.94307 0.94533 0.92250 1.21760 0.99354 1.27529 1.09141 0.90325 1.26179 1.03754 0.95573 0.95236 1.70192 1.38350 1.36263 1.13164 0.85248 0.78010 0.78213 0.78600 1.17398 1.20698 1.20750 1.83795 0.97448 1.10690 1.67547 0.89058 0.90192 0.88971 0.79591 0.89825 0.93220 0.90698 0.93352 0.93138 0.74239 0.87424 0.87309 1.00041 1.00145 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.42 71.24 0.74 0.13 16 2 C -0.22 -3.37 6.60 24.64 0.16 -3.21 16 3 C 0.01 0.17 11.25 83.66 0.94 1.11 16 4 N -0.49 -11.93 10.53 -191.44 -2.02 -13.95 16 5 C 0.03 0.63 5.91 88.52 0.52 1.16 16 6 C -0.01 -0.26 2.86 -11.54 -0.03 -0.29 16 7 H 0.12 1.55 8.12 -2.39 -0.02 1.53 16 8 C -0.14 -2.17 9.04 71.98 0.65 -1.52 16 9 C 0.14 3.72 5.04 86.38 0.44 4.15 16 10 N -0.71 -19.21 5.28 -463.06 -2.45 -21.66 16 11 C 0.51 20.12 7.83 87.66 0.69 20.81 16 12 O -0.59 -30.38 15.98 -3.04 -0.05 -30.43 16 13 C -0.12 -4.68 5.64 29.85 0.17 -4.52 16 14 C 0.04 2.24 4.26 29.85 0.13 2.36 16 15 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 16 H 0.08 4.06 7.74 -2.91 -0.02 4.03 16 17 C -0.01 -0.61 5.46 84.66 0.46 -0.14 16 18 N -0.94 -60.44 13.29 21.45 0.28 -60.15 16 19 Si 0.98 44.57 29.54 68.60 2.03 46.60 16 20 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 S 0.15 2.33 23.17 -56.49 -1.31 1.02 16 24 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.08 1.08 7.18 -2.39 -0.02 1.06 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.42 7.53 7.65 -92.71 -0.71 6.82 16 34 H 0.11 3.71 8.14 -2.38 -0.02 3.69 16 35 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 36 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 37 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 38 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -82.11 339.06 1.93 -80.18 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.34 Total: 8.98 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.10 Total: -10.59 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -4.18 Total: -95.76 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.05 Total: -30.43 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.02 kcal Total: -82.11 1.93 -80.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291969001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.812 kcal (2) G-P(sol) polarization free energy of solvation -82.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds