Wall clock time and date at job start Tue Mar 31 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09004 * 109.46655 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47295 * 300.03744 * 6 5 4 9 9 C 1.52992 * 109.47227 * 60.04099 * 6 5 4 10 10 N 1.46498 * 109.46939 * 174.99512 * 9 6 5 11 11 C 1.34782 * 119.99784 * 180.02562 * 10 9 6 12 12 O 1.21279 * 120.00280 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99828 * 180.02562 * 11 10 9 14 14 C 1.53003 * 109.47119 * 179.97438 * 13 11 10 15 15 C 1.50690 * 109.47107 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00518 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00238 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00680 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99749 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46878 * 90.00118 * 19 17 15 21 21 H 1.48495 * 109.47149 * 210.00023 * 19 17 15 22 22 H 1.48497 * 109.47129 * 330.00464 * 19 17 15 23 23 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 24 24 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 27 27 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.47034 * 60.00520 * 8 6 5 29 29 H 1.09000 * 109.47194 * 179.97438 * 8 6 5 30 30 H 1.08997 * 109.47636 * 300.00701 * 8 6 5 31 31 H 1.08996 * 109.47442 * 295.00145 * 9 6 5 32 32 H 1.09004 * 109.46899 * 55.00022 * 9 6 5 33 33 H 0.96999 * 120.00617 * 0.02562 * 10 9 6 34 34 H 1.09006 * 109.46767 * 299.99428 * 13 11 10 35 35 H 1.08992 * 109.47339 * 59.99472 * 13 11 10 36 36 H 1.08997 * 109.46745 * 299.99598 * 14 13 11 37 37 H 1.09005 * 109.46837 * 59.99320 * 14 13 11 38 38 H 0.96994 * 120.00523 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3559 -2.0146 -0.0119 8 6 6.0727 -0.4055 -1.2522 9 6 6.0736 -0.4201 1.2462 10 7 7.4172 -1.0013 1.3040 11 6 8.2395 -0.6971 2.3276 12 8 7.8674 0.0581 3.2006 13 6 9.6218 -1.2946 2.3868 14 6 10.3422 -0.7902 3.6388 15 6 11.7242 -1.3881 3.6983 16 1 12.0558 -2.0603 2.9206 17 6 12.5658 -1.0762 4.7449 18 7 13.7721 -1.5976 4.7966 19 14 11.9932 0.0880 6.0888 20 1 11.3397 -0.6896 7.1721 21 1 13.1615 0.8200 6.6405 22 1 11.0231 1.0591 5.5222 23 16 2.5436 -1.4248 -0.0077 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5091 27 1 1.9025 2.0874 -0.0004 28 1 6.0700 0.6845 -1.2458 29 1 7.1014 -0.7658 -1.2544 30 1 5.5595 -0.7648 -2.1441 31 1 6.1491 0.6666 1.2089 32 1 5.5117 -0.7151 2.1324 33 1 7.7150 -1.6050 0.6056 34 1 9.5465 -2.3814 2.4234 35 1 10.1836 -0.9990 1.5008 36 1 10.4174 0.2965 3.6017 37 1 9.7804 -1.0855 4.5250 38 1 14.3640 -1.3785 5.5331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291969003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:29 Heat of formation + Delta-G solvation = -16.653319 kcal Electronic energy + Delta-G solvation = -18888.807384 eV Core-core repulsion = 15857.337809 eV Total energy + Delta-G solvation = -3031.469575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21603 -39.23795 -36.40525 -33.45904 -33.41781 -32.00539 -31.15966 -27.40442 -27.17041 -25.49373 -24.58374 -22.19263 -21.12793 -19.86378 -18.94001 -18.42146 -17.17896 -16.08631 -15.93117 -15.53637 -15.32478 -14.94558 -14.39939 -14.22559 -13.99031 -13.57414 -13.50575 -13.20151 -13.05099 -12.95740 -12.54114 -12.39512 -12.00721 -11.60073 -11.53363 -11.38540 -11.34018 -10.93027 -10.13819 -10.01821 -9.88376 -9.75685 -9.55394 -9.25594 -9.15712 -9.04695 -8.86037 -8.48407 -6.00898 -3.99470 0.35025 0.96593 1.39160 2.51589 3.16257 3.39229 3.40274 3.46712 3.58327 3.86447 4.47829 4.53343 4.54445 4.59264 4.72464 4.72663 5.03150 5.05076 5.31642 5.34706 5.36394 5.44743 5.52750 5.54909 5.66013 5.81482 5.92391 6.03190 6.11035 6.13016 6.60931 6.72482 7.39617 7.44094 7.46740 7.77123 7.82532 8.52404 8.68687 9.02276 9.62358 11.11891 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.039245 B = 0.002749 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.299788 B =10184.803223 C =10509.074072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.228 4.228 3 C 0.035 3.965 4 N -0.462 5.462 5 C 0.057 3.943 6 C -0.024 4.024 7 H 0.096 0.904 8 C -0.140 4.140 9 C 0.134 3.866 10 N -0.742 5.742 11 C 0.510 3.490 12 O -0.539 6.539 13 C -0.121 4.121 14 C 0.001 3.999 15 C -0.524 4.524 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.261 1.261 23 S 0.120 5.880 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.175 0.825 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.398 0.602 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.991 -0.023 -14.968 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.349 4.349 3 C -0.116 4.116 4 N -0.175 5.175 5 C -0.222 4.222 6 C -0.046 4.046 7 H 0.114 0.886 8 C -0.199 4.199 9 C 0.008 3.992 10 N -0.396 5.396 11 C 0.299 3.701 12 O -0.415 6.415 13 C -0.161 4.161 14 C -0.037 4.037 15 C -0.562 4.562 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.704 3.296 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.185 1.185 23 S 0.376 5.624 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.192 0.808 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.233 0.767 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.858 -0.136 -14.210 30.385 hybrid contribution -0.472 1.143 0.416 1.305 sum -27.330 1.006 -13.794 30.630 Atomic orbital electron populations 1.20231 0.86733 1.03393 1.03045 1.26013 1.01684 0.95089 1.12099 1.21729 0.86843 1.00129 1.02876 1.66191 1.17647 1.18568 1.15127 1.26752 1.00136 0.91443 1.03854 1.20050 0.86604 1.00457 0.97517 0.88625 1.21823 1.00091 1.02817 0.95158 1.21167 0.83138 0.99313 0.95545 1.46149 1.14914 1.50902 1.27680 1.21541 0.87714 0.80701 0.80180 1.90663 1.76670 1.35887 1.38243 1.21667 0.90020 1.01225 1.03230 1.19372 0.95292 0.97104 0.91935 1.21116 0.96776 1.28635 1.09686 0.90919 1.24974 0.94671 0.95729 0.97907 1.69907 1.07483 1.44590 1.32317 0.86797 0.78397 0.82038 0.82342 1.20261 1.21466 1.18499 1.84005 0.98679 1.11375 1.68373 0.90457 0.91109 0.90184 0.80830 0.91110 0.91097 0.92279 0.90518 0.91785 0.76732 0.89603 0.89544 0.95808 0.96292 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.42 36.01 0.38 0.01 16 2 C -0.23 -1.83 6.60 -35.92 -0.24 -2.07 16 3 C 0.04 0.33 11.25 -19.18 -0.22 0.12 16 4 N -0.46 -5.35 10.53 -11.86 -0.12 -5.47 16 5 C 0.06 0.58 5.91 -13.45 -0.08 0.50 16 6 C -0.02 -0.22 2.86 -91.78 -0.26 -0.48 16 7 H 0.10 0.70 8.12 -51.93 -0.42 0.28 16 8 C -0.14 -1.17 9.04 37.16 0.34 -0.84 16 9 C 0.13 1.69 5.04 -4.05 -0.02 1.67 16 10 N -0.74 -9.81 5.28 -60.30 -0.32 -10.12 16 11 C 0.51 9.39 7.83 -10.98 -0.09 9.30 16 12 O -0.54 -12.30 15.98 5.56 0.09 -12.21 16 13 C -0.12 -2.35 5.64 -27.88 -0.16 -2.51 16 14 C 0.00 0.02 3.33 -27.89 -0.09 -0.07 16 15 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 16 H 0.07 2.17 7.99 -52.48 -0.42 1.76 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 19 Si 0.88 22.86 27.47 -169.99 -4.67 18.19 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 23 S 0.12 1.00 23.17 -107.50 -2.49 -1.49 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.52 7.18 -51.93 -0.37 0.15 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.40 3.91 7.65 -40.82 -0.31 3.60 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 37 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -35.54 335.46 -8.24 -43.78 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.68 Total: -2.43 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.87 Total: -7.87 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.33 Total: -43.02 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.67 Total: 18.19 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.54 -8.24 -43.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291969003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.123 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds