Wall clock time and date at job start Tue Mar 31 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50705 * 124.91485 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47063 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47137 * 299.97783 * 6 5 4 9 9 C 1.53004 * 109.46979 * 59.97402 * 6 5 4 10 10 N 1.46497 * 109.46935 * 174.99944 * 9 6 5 11 11 C 1.34777 * 119.99835 * 179.97438 * 10 9 6 12 12 O 1.21279 * 119.99891 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99990 * 180.02562 * 11 10 9 14 14 C 1.53004 * 109.47089 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46810 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99926 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99551 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00513 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47251 * 90.00148 * 19 17 15 21 21 H 1.48503 * 109.47192 * 210.00352 * 19 17 15 22 22 H 1.48503 * 109.47300 * 330.00186 * 19 17 15 23 23 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 25 25 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 26 26 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 27 27 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 28 28 H 1.09001 * 109.47273 * 180.02562 * 8 6 5 29 29 H 1.09006 * 109.46585 * 299.99651 * 8 6 5 30 30 H 1.08994 * 109.47415 * 59.99265 * 8 6 5 31 31 H 1.09000 * 109.46739 * 295.00018 * 9 6 5 32 32 H 1.09000 * 109.47053 * 55.00102 * 9 6 5 33 33 H 0.96996 * 120.00441 * 0.02562 * 10 9 6 34 34 H 1.09003 * 109.46522 * 300.00013 * 13 11 10 35 35 H 1.09000 * 109.47397 * 59.99945 * 13 11 10 36 36 H 1.09000 * 109.46739 * 299.99641 * 14 13 11 37 37 H 1.09000 * 109.47053 * 59.99725 * 14 13 11 38 38 H 0.96992 * 119.99965 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1270 0.0010 7 1 3.9388 -3.0710 0.0009 8 6 5.3640 -2.0459 -1.2476 9 6 5.3625 -2.0454 1.2508 10 7 6.2329 -3.2221 1.3133 11 6 7.0996 -3.3656 2.3354 12 8 7.1592 -2.5204 3.2031 13 6 7.9955 -4.5758 2.3994 14 6 8.8742 -4.4942 3.6492 15 6 9.7696 -5.7047 3.7135 16 1 9.7174 -6.4567 2.9400 17 6 10.6562 -5.8516 4.7591 18 7 10.7201 -4.9357 5.7007 19 14 11.7665 -7.3517 4.8385 20 1 13.0381 -7.0645 4.1272 21 1 12.0562 -7.6786 6.2578 22 1 11.0880 -8.5045 4.1936 23 7 2.2200 -1.1083 -0.0010 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.8390 2.1309 0.0037 28 1 6.0722 -2.8745 -1.2473 29 1 4.7378 -2.1040 -2.1380 30 1 5.9086 -1.1018 -1.2476 31 1 5.9731 -1.1435 1.2073 32 1 4.7302 -2.0136 2.1382 33 1 6.1860 -3.8975 0.6187 34 1 7.3850 -5.4777 2.4430 35 1 8.6274 -4.6074 1.5118 36 1 9.4847 -3.5922 3.6059 37 1 8.2420 -4.4629 4.5365 38 1 11.3435 -5.0393 6.4365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292002513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:01 Heat of formation + Delta-G solvation = -18.008684 kcal Electronic energy + Delta-G solvation = -18872.369405 eV Core-core repulsion = 15840.841057 eV Total energy + Delta-G solvation = -3031.528348 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24549 -39.20530 -36.46868 -33.44052 -33.19935 -31.37155 -30.78368 -27.93369 -27.11409 -25.68448 -24.47053 -21.70306 -21.10002 -20.01557 -19.65736 -17.78906 -16.87792 -16.15964 -15.80158 -15.51524 -15.19630 -14.95679 -14.40441 -14.33579 -13.90091 -13.49770 -13.33783 -13.01270 -12.93337 -12.77387 -12.28168 -12.18543 -12.00569 -11.65719 -11.50852 -11.27638 -11.14948 -10.91728 -10.58909 -9.94479 -9.91728 -9.66406 -9.65658 -9.19779 -9.05396 -8.92576 -8.82210 -8.30856 -5.94933 -3.99332 0.41813 1.09810 1.50145 2.47835 3.25557 3.31908 3.34204 3.40490 3.43165 3.87659 4.42216 4.48892 4.61948 4.67035 4.82797 4.93190 5.07694 5.24970 5.34126 5.38473 5.39990 5.42090 5.52953 5.60156 5.66075 5.86580 5.89700 5.94770 6.23862 6.25283 6.65567 6.90275 7.47518 7.75600 7.85749 7.87704 8.08567 8.39778 8.77251 9.09374 9.64161 11.16047 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043983 B = 0.002603 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.462987 B =10754.913820 C =10854.532376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 C -0.270 4.270 4 S 0.135 5.865 5 C 0.063 3.937 6 C -0.029 4.029 7 H 0.109 0.891 8 C -0.148 4.148 9 C 0.127 3.873 10 N -0.742 5.742 11 C 0.510 3.490 12 O -0.533 6.533 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 N -0.471 5.471 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.176 0.824 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.332 10.638 -16.748 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.409 4.409 4 S 0.391 5.609 5 C -0.216 4.216 6 C -0.051 4.051 7 H 0.127 0.873 8 C -0.206 4.206 9 C 0.002 3.998 10 N -0.397 5.397 11 C 0.299 3.701 12 O -0.408 6.408 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.185 5.185 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.194 0.806 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.463 11.346 -15.918 26.211 hybrid contribution -0.403 -0.977 -0.230 1.082 sum -17.866 10.369 -16.148 26.219 Atomic orbital electron populations 1.20358 0.87077 1.03446 1.02899 1.20316 0.98305 0.86499 1.01529 1.26876 0.95487 1.04013 1.14483 1.84119 1.06869 1.02631 1.67310 1.26795 0.93817 0.98095 1.02882 1.20052 0.93186 0.95297 0.96582 0.87308 1.21954 0.99354 1.03426 0.95900 1.21267 0.92340 0.90038 0.96200 1.46148 1.40928 1.24436 1.28220 1.21593 0.79683 0.88872 0.79996 1.90677 1.68051 1.43829 1.38209 1.21869 0.97541 0.93512 1.04000 1.18906 0.93539 0.97283 0.90392 1.21223 1.20401 1.06456 1.08431 0.92586 1.25030 0.97309 0.96396 0.95696 1.69996 1.36878 1.34084 1.11891 0.86589 0.80992 0.83153 0.77193 1.20682 1.21239 1.19891 1.66131 1.04413 1.31745 1.16236 0.90676 0.90492 0.90716 0.80637 0.90577 0.91736 0.91836 0.91328 0.91309 0.76750 0.90169 0.90162 0.95810 0.95815 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.31 36.00 0.37 -0.18 16 2 C 0.07 0.66 6.74 -84.22 -0.57 0.09 16 3 C -0.27 -2.38 11.13 29.12 0.32 -2.05 16 4 S 0.14 1.28 22.67 -107.50 -2.44 -1.15 16 5 C 0.06 0.68 6.03 -13.46 -0.08 0.60 16 6 C -0.03 -0.28 2.85 -91.77 -0.26 -0.54 16 7 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 8 C -0.15 -1.17 8.96 37.16 0.33 -0.84 16 9 C 0.13 1.60 4.92 -4.04 -0.02 1.58 16 10 N -0.74 -10.08 5.28 -60.29 -0.32 -10.39 16 11 C 0.51 9.72 7.83 -10.98 -0.09 9.63 16 12 O -0.53 -12.62 15.98 5.56 0.09 -12.53 16 13 C -0.13 -2.59 5.64 -27.88 -0.16 -2.75 16 14 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 15 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 N -0.47 -5.61 10.53 -8.06 -0.08 -5.69 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 27 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 28 H 0.08 0.54 7.18 -51.93 -0.37 0.16 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.51 7.93 -51.93 -0.41 0.09 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 4.08 7.65 -40.82 -0.31 3.76 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -35.23 338.15 -8.32 -43.55 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.70 Total: -1.46 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.68 Total: -7.29 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.33 Total: -42.90 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.44 Total: -1.15 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.23 -8.32 -43.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292002513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.542 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds