Wall clock time and date at job start Tue Mar 31 2020 05:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50705 * 124.91485 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47063 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47137 * 299.97783 * 6 5 4 9 9 C 1.53004 * 109.46979 * 59.97402 * 6 5 4 10 10 N 1.46497 * 109.46935 * 174.99944 * 9 6 5 11 11 C 1.34777 * 119.99835 * 179.97438 * 10 9 6 12 12 O 1.21279 * 119.99891 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99990 * 180.02562 * 11 10 9 14 14 C 1.53004 * 109.47089 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46810 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99926 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99551 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00513 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47251 * 90.00148 * 19 17 15 21 21 H 1.48503 * 109.47192 * 210.00352 * 19 17 15 22 22 H 1.48503 * 109.47300 * 330.00186 * 19 17 15 23 23 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 25 25 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 26 26 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 27 27 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 28 28 H 1.09001 * 109.47273 * 180.02562 * 8 6 5 29 29 H 1.09006 * 109.46585 * 299.99651 * 8 6 5 30 30 H 1.08994 * 109.47415 * 59.99265 * 8 6 5 31 31 H 1.09000 * 109.46739 * 295.00018 * 9 6 5 32 32 H 1.09000 * 109.47053 * 55.00102 * 9 6 5 33 33 H 0.96996 * 120.00441 * 0.02562 * 10 9 6 34 34 H 1.09003 * 109.46522 * 300.00013 * 13 11 10 35 35 H 1.09000 * 109.47397 * 59.99945 * 13 11 10 36 36 H 1.09000 * 109.46739 * 299.99641 * 14 13 11 37 37 H 1.09000 * 109.47053 * 59.99725 * 14 13 11 38 38 H 0.96992 * 119.99965 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1270 0.0010 7 1 3.9388 -3.0710 0.0009 8 6 5.3640 -2.0459 -1.2476 9 6 5.3625 -2.0454 1.2508 10 7 6.2329 -3.2221 1.3133 11 6 7.0996 -3.3656 2.3354 12 8 7.1592 -2.5204 3.2031 13 6 7.9955 -4.5758 2.3994 14 6 8.8742 -4.4942 3.6492 15 6 9.7696 -5.7047 3.7135 16 1 9.7174 -6.4567 2.9400 17 6 10.6562 -5.8516 4.7591 18 7 10.7201 -4.9357 5.7007 19 14 11.7665 -7.3517 4.8385 20 1 13.0381 -7.0645 4.1272 21 1 12.0562 -7.6786 6.2578 22 1 11.0880 -8.5045 4.1936 23 7 2.2200 -1.1083 -0.0010 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.8390 2.1309 0.0037 28 1 6.0722 -2.8745 -1.2473 29 1 4.7378 -2.1040 -2.1380 30 1 5.9086 -1.1018 -1.2476 31 1 5.9731 -1.1435 1.2073 32 1 4.7302 -2.0136 2.1382 33 1 6.1860 -3.8975 0.6187 34 1 7.3850 -5.4777 2.4430 35 1 8.6274 -4.6074 1.5118 36 1 9.4847 -3.5922 3.6059 37 1 8.2420 -4.4629 4.5365 38 1 11.3435 -5.0393 6.4365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292002513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:00 Heat of formation + Delta-G solvation = -42.608368 kcal Electronic energy + Delta-G solvation = -18873.436128 eV Core-core repulsion = 15840.841057 eV Total energy + Delta-G solvation = -3032.595071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07594 -40.61447 -37.54587 -35.54224 -34.34918 -32.95137 -31.92980 -28.56419 -28.45460 -27.09363 -25.60955 -23.47133 -22.02778 -21.24689 -20.70175 -18.89762 -18.45731 -17.46952 -17.19960 -16.76253 -16.48317 -16.22976 -15.80228 -15.51614 -14.81969 -14.66076 -14.36372 -14.17002 -14.01488 -13.83823 -13.48889 -13.34648 -13.21384 -12.81826 -12.76402 -12.49099 -12.43467 -12.32079 -12.04542 -11.88956 -11.61802 -11.28879 -10.80941 -10.67398 -10.55573 -10.41950 -10.12718 -9.68253 -8.16516 -6.30389 -0.32825 0.36984 0.77003 1.43395 1.46142 1.56993 1.71221 1.71912 2.16772 2.45190 3.04368 3.16604 3.56631 3.83687 3.91075 4.08891 4.21861 4.28046 4.36470 4.52483 4.56183 4.62085 4.65142 4.76105 4.80725 4.86317 4.90929 5.01208 5.11863 5.21695 5.33620 5.40702 5.52910 5.65847 5.87677 6.19398 6.59672 6.72572 6.88561 7.34236 7.39994 8.96230 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043983 B = 0.002603 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.462987 B =10754.913820 C =10854.532376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 C -0.262 4.262 4 S 0.137 5.863 5 C 0.044 3.956 6 C -0.017 4.017 7 H 0.115 0.885 8 C -0.145 4.145 9 C 0.130 3.870 10 N -0.713 5.713 11 C 0.512 3.488 12 O -0.589 6.589 13 C -0.118 4.118 14 C 0.040 3.960 15 C -0.541 4.541 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.255 1.255 23 N -0.495 5.495 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.204 0.796 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.109 0.891 36 H -0.017 1.017 37 H -0.019 1.019 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 9.557 -19.041 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.401 4.401 4 S 0.392 5.608 5 C -0.234 4.234 6 C -0.040 4.040 7 H 0.133 0.867 8 C -0.204 4.204 9 C 0.005 3.995 10 N -0.368 5.368 11 C 0.301 3.699 12 O -0.469 6.469 13 C -0.158 4.158 14 C 0.003 3.997 15 C -0.579 4.579 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.179 1.179 23 N -0.210 5.210 24 H 0.105 0.895 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.221 0.779 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.257 0.743 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.001 0.999 37 H -0.001 1.001 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.050 10.237 -18.289 27.660 hybrid contribution -0.309 -0.549 0.470 0.786 sum -18.359 9.688 -17.819 27.357 Atomic orbital electron populations 1.20440 0.85226 1.04050 1.03817 1.20812 0.99692 0.86407 1.01979 1.27241 0.94766 1.05078 1.13022 1.84094 1.07725 1.01947 1.67000 1.26925 0.93898 0.98881 1.03673 1.19949 0.92791 0.95465 0.95753 0.86720 1.21967 0.99338 1.03895 0.95156 1.21275 0.92039 0.89104 0.97103 1.45774 1.39053 1.25073 1.26918 1.21382 0.80210 0.87952 0.80386 1.90666 1.69955 1.45578 1.40675 1.21643 0.97536 0.95083 1.01530 1.18706 0.93433 0.95417 0.92184 1.21730 1.20294 1.07021 1.08876 0.90440 1.26152 0.99257 0.99979 0.95216 1.70180 1.38093 1.36756 1.12865 0.85318 0.78716 0.78978 0.77206 1.19671 1.21337 1.17857 1.66150 1.04971 1.33064 1.16812 0.89547 0.91265 0.88740 0.77927 0.89353 0.90700 0.91962 0.91886 0.93282 0.74253 0.87618 0.87274 0.99880 1.00086 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.31 71.23 0.73 -0.21 16 2 C 0.04 0.80 6.74 41.52 0.28 1.08 16 3 C -0.26 -4.20 11.13 66.78 0.74 -3.45 16 4 S 0.14 2.48 22.67 -56.49 -1.28 1.20 16 5 C 0.04 0.93 6.03 88.52 0.53 1.46 16 6 C -0.02 -0.32 2.85 -11.54 -0.03 -0.35 16 7 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 8 C -0.15 -1.99 8.96 71.98 0.65 -1.34 16 9 C 0.13 3.21 4.92 86.38 0.43 3.64 16 10 N -0.71 -18.42 5.28 -463.06 -2.45 -20.87 16 11 C 0.51 19.51 7.83 87.66 0.69 20.19 16 12 O -0.59 -29.06 15.98 -3.03 -0.05 -29.11 16 13 C -0.12 -4.63 5.64 29.85 0.17 -4.46 16 14 C 0.04 2.24 4.26 29.85 0.13 2.37 16 15 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 16 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 17 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 18 N -0.94 -59.89 13.29 21.45 0.28 -59.60 16 19 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 23 N -0.49 -11.41 10.53 -179.40 -1.89 -13.29 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.09 0.76 8.12 -2.39 -0.02 0.74 16 27 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 28 H 0.09 0.98 7.18 -2.39 -0.02 0.96 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.88 7.93 -2.39 -0.02 0.86 16 31 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.42 7.39 7.65 -92.71 -0.71 6.68 16 34 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 36 H -0.02 -1.09 8.10 -2.39 -0.02 -1.10 16 37 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 38 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -79.87 338.15 2.00 -77.87 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.35 Total: 9.08 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 5.01 Total: -11.60 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -4.05 Total: -93.77 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.28 Total: 1.20 kcal Total: -79.87 2.00 -77.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292002513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.261 kcal (2) G-P(sol) polarization free energy of solvation -79.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds