Wall clock time and date at job start Tue Mar 31 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47358 * 2 1 4 4 C 1.53001 * 109.46817 * 239.99795 * 2 1 3 5 5 C 1.53007 * 109.46856 * 120.00106 * 2 1 3 6 6 N 1.46491 * 109.47060 * 53.72935 * 5 2 1 7 7 C 1.46506 * 120.00370 * 86.94336 * 6 5 2 8 8 C 1.50693 * 109.47241 * 89.99635 * 7 6 5 9 9 H 1.08010 * 120.00173 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00106 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99549 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00130 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47149 * 60.00189 * 12 10 8 14 14 H 1.48496 * 109.47189 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47187 * 300.00446 * 12 10 8 16 16 C 1.34784 * 120.00053 * 266.93826 * 6 5 2 17 17 O 1.21579 * 120.00044 * 185.37790 * 16 6 5 18 18 C 1.47688 * 119.99872 * 5.37851 * 16 6 5 19 19 C 1.39485 * 122.10517 * 174.18294 * 18 16 6 20 20 C 1.35000 * 111.68735 * 179.78552 * 19 18 16 21 21 S 1.71768 * 105.44759 * 0.43116 * 20 19 18 22 22 N 1.30605 * 122.10232 * 354.47142 * 18 16 6 23 23 H 1.08999 * 109.46741 * 310.53971 * 1 2 3 24 24 H 1.09003 * 109.47041 * 70.53454 * 1 2 3 25 25 H 1.08997 * 109.47411 * 190.53850 * 1 2 3 26 26 H 1.08997 * 109.46577 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.46654 * 300.00030 * 3 2 1 28 28 H 1.08996 * 109.46891 * 59.99933 * 3 2 1 29 29 H 1.09004 * 109.47151 * 300.00258 * 4 2 1 30 30 H 1.08994 * 109.47350 * 60.00412 * 4 2 1 31 31 H 1.09002 * 109.46600 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46847 * 293.72883 * 5 2 1 33 33 H 1.08998 * 109.46512 * 173.72761 * 5 2 1 34 34 H 1.08997 * 109.46995 * 209.99647 * 7 6 5 35 35 H 1.09003 * 109.46716 * 329.99587 * 7 6 5 36 36 H 0.97007 * 119.99375 * 179.97438 * 11 10 8 37 37 H 1.07999 * 124.15382 * 359.97438 * 19 18 16 38 38 H 1.07997 * 127.27819 * 180.16927 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4324 -2.0520 1.3271 7 6 2.0577 -3.1842 0.6390 8 6 3.0393 -3.8548 1.5651 9 1 3.1828 -3.4758 2.5663 10 6 3.7543 -4.9522 1.1343 11 7 3.5800 -5.4134 -0.0849 12 14 4.9717 -5.7830 2.2820 13 1 4.2593 -6.2708 3.4902 14 1 5.6063 -6.9300 1.5842 15 1 6.0176 -4.8084 2.6838 16 6 0.2980 -2.2348 2.0317 17 8 -0.1530 -3.3543 2.1780 18 6 -0.3971 -1.0751 2.6260 19 6 -1.6332 -1.1971 3.2606 20 6 -2.0726 -0.0098 3.7294 21 16 -0.8626 1.1296 3.2956 22 7 0.1045 0.1302 2.5855 23 1 -0.3633 0.6680 0.7810 24 1 -0.3633 0.3425 -0.9690 25 1 -0.3634 -1.0103 0.1879 26 1 3.1300 1.4423 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6765 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 1.7712 -0.1468 2.1357 33 1 3.1241 -0.8195 1.1949 34 1 1.2897 -3.8993 0.3441 35 1 2.5809 -2.8265 -0.2478 36 1 4.0833 -6.1852 -0.3881 37 1 -2.1711 -2.1275 3.3666 38 1 -2.9927 0.1836 4.2609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294470876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:07 Heat of formation + Delta-G solvation = 28.205382 kcal Electronic energy + Delta-G solvation = -21234.312378 eV Core-core repulsion = 18204.788022 eV Total energy + Delta-G solvation = -3029.524356 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52793 -37.93359 -36.93514 -33.83945 -32.42600 -31.47320 -28.11112 -27.01573 -26.72421 -26.19609 -25.06796 -22.89066 -20.79513 -19.16870 -18.53368 -18.28640 -16.61820 -16.32223 -15.48480 -15.28006 -14.47003 -14.37510 -14.15766 -13.75024 -13.44556 -13.17933 -13.04772 -12.48847 -12.35030 -12.12393 -11.84850 -11.56432 -11.28539 -11.18604 -11.13086 -10.94164 -10.74536 -10.69815 -10.43111 -10.20058 -10.12270 -9.75338 -9.57321 -9.48154 -8.97190 -8.65408 -8.38376 -7.57050 -6.01101 -4.05040 0.72210 1.54966 1.96391 2.07697 3.34608 3.38417 3.41989 3.87092 3.91256 4.47749 4.81093 5.06558 5.23092 5.26162 5.33179 5.35949 5.46161 5.67134 5.88056 5.89536 5.92830 5.96730 6.11571 6.17106 6.23312 6.33199 6.39334 6.47091 6.55474 6.66961 6.74758 6.84294 7.16288 7.43750 7.58524 7.95035 8.26688 8.41301 8.88610 9.05013 9.59145 11.06766 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.006261 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.982538 B = 4471.257694 C = 5266.756794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.147 4.147 5 C 0.105 3.895 6 N -0.569 5.569 7 C 0.241 3.759 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.572 3.428 17 O -0.531 6.531 18 C 0.066 3.934 19 C -0.134 4.134 20 C -0.278 4.278 21 S 0.393 5.607 22 N -0.488 5.488 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.263 0.737 37 H 0.169 0.831 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.667 16.349 3.640 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 C -0.189 4.189 4 C -0.204 4.204 5 C -0.021 4.021 6 N -0.299 5.299 7 C 0.122 3.878 8 C -0.564 4.564 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.725 3.275 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.354 3.646 17 O -0.407 6.407 18 C -0.109 4.109 19 C -0.168 4.168 20 C -0.427 4.427 21 S 0.550 5.450 22 N -0.320 5.320 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.186 0.814 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.731 17.401 3.345 19.332 hybrid contribution -0.124 -2.309 0.655 2.403 sum -7.854 15.092 3.999 17.477 Atomic orbital electron populations 1.22208 0.95552 1.01586 1.00388 1.20765 0.95529 0.95025 0.96192 1.21738 1.00701 0.95429 1.01038 1.22068 1.00993 1.01426 0.95919 1.22217 0.97713 0.83330 0.98805 1.48070 1.22818 1.10789 1.48173 1.19526 0.93209 0.82709 0.92322 1.21399 1.22071 1.13228 0.99659 0.92530 1.24906 0.97198 0.96638 0.95256 1.69921 1.41871 1.24934 1.16715 0.86572 0.81060 0.78941 0.80933 1.20209 1.21189 1.20289 1.17260 0.81522 0.86015 0.79842 1.90787 1.66693 1.23253 1.59994 1.21625 0.95349 0.91628 1.02316 1.21439 0.95406 1.00453 0.99454 1.27011 1.07798 0.99189 1.08656 1.80676 1.04131 1.17596 1.42558 1.73422 1.28967 1.07348 1.22311 0.92280 0.94013 0.92914 0.92837 0.93208 0.92839 0.91204 0.93812 0.92655 0.86929 0.90864 0.94142 0.93528 0.92703 0.81377 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 6.90 37.16 0.26 -1.89 16 2 C -0.07 -1.15 0.78 -154.50 -0.12 -1.27 16 3 C -0.13 -1.67 8.45 37.16 0.31 -1.35 16 4 C -0.15 -2.45 7.46 37.16 0.28 -2.17 16 5 C 0.11 1.92 4.40 -4.04 -0.02 1.90 16 6 N -0.57 -12.55 1.94 -176.23 -0.34 -12.89 16 7 C 0.24 6.33 4.26 -5.19 -0.02 6.31 16 8 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 9 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 10 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 12 Si 0.90 22.19 29.54 -169.99 -5.02 17.16 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 C 0.57 12.53 6.18 -12.40 -0.08 12.46 16 17 O -0.53 -13.59 16.31 5.30 0.09 -13.51 16 18 C 0.07 1.12 5.07 -84.06 -0.43 0.69 16 19 C -0.13 -1.90 9.98 -40.27 -0.40 -2.30 16 20 C -0.28 -2.89 11.41 29.58 0.34 -2.55 16 21 S 0.39 4.09 22.58 -107.50 -2.43 1.66 16 22 N -0.49 -7.09 4.46 24.85 0.11 -6.98 16 23 H 0.06 0.83 5.04 -51.93 -0.26 0.57 16 24 H 0.04 0.59 8.11 -51.93 -0.42 0.17 16 25 H 0.05 0.95 5.38 -51.93 -0.28 0.67 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.36 5.63 -51.93 -0.29 1.06 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 1.94 4.77 -59.07 -0.28 1.66 16 33 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 34 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 35 H 0.05 1.22 5.60 -51.93 -0.29 0.93 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.17 2.34 8.00 -52.49 -0.42 1.92 16 38 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 312.16 15.07 4.70 4.70 Total: -1.00 -32.14 312.16 -7.59 -39.74 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.14 Total: -0.05 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.30 Total: -3.91 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.51 Total: -45.80 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -2.43 Total: 1.66 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.14 -7.59 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294470876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.941 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds