Wall clock time and date at job start Tue Mar 31 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47124 * 2 1 4 4 C 1.50700 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.29429 * 124.80154 * 90.02493 * 4 3 2 6 6 C 1.30942 * 117.36115 * 179.97438 * 5 4 3 7 7 C 1.50704 * 122.90023 * 179.97438 * 6 5 4 8 8 C 1.35656 * 114.19379 * 0.02562 * 6 5 4 9 9 C 1.46680 * 126.13207 * 180.02562 * 8 6 5 10 10 O 1.21694 * 120.00089 * 350.92424 * 9 8 6 11 11 N 1.34780 * 120.00144 * 170.92586 * 9 8 6 12 12 C 1.46500 * 119.99902 * 0.51590 * 11 9 8 13 13 C 1.46504 * 119.99888 * 180.51752 * 11 9 8 14 14 C 1.50707 * 109.46922 * 89.99663 * 13 11 9 15 15 H 1.08003 * 119.99842 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99936 * 179.97438 * 14 13 11 17 17 N 1.31511 * 119.99796 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48488 * 109.47185 * 90.00270 * 18 16 14 20 20 H 1.48502 * 109.47096 * 210.00712 * 18 16 14 21 21 H 1.48503 * 109.46761 * 330.00398 * 18 16 14 22 22 S 1.70953 * 124.80539 * 269.72089 * 4 3 2 23 23 H 1.09007 * 109.47215 * 60.00078 * 1 2 3 24 24 H 1.08999 * 109.47394 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47708 * 300.00310 * 1 2 3 26 26 H 1.08996 * 109.46612 * 119.99547 * 2 1 3 27 27 H 1.08990 * 109.47199 * 239.99698 * 2 1 3 28 28 H 1.08997 * 109.46926 * 300.00087 * 3 2 1 29 29 H 1.09001 * 109.47081 * 59.99306 * 3 2 1 30 30 H 1.09004 * 109.46879 * 90.02863 * 7 6 5 31 31 H 1.09008 * 109.46871 * 210.02333 * 7 6 5 32 32 H 1.08997 * 109.47351 * 330.02227 * 7 6 5 33 33 H 1.09000 * 109.46659 * 83.50911 * 12 11 9 34 34 H 1.09003 * 109.47133 * 203.50535 * 12 11 9 35 35 H 1.09001 * 109.46896 * 323.50475 * 12 11 9 36 36 H 1.08997 * 109.46722 * 209.99324 * 13 11 9 37 37 H 1.08996 * 109.47326 * 330.00259 * 13 11 9 38 38 H 0.96996 * 120.00051 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2862 1.4428 -1.0618 6 6 5.5845 1.4433 -0.8917 7 6 6.5605 1.4431 -2.0400 8 6 5.9750 1.4428 0.4074 9 6 7.3585 1.4437 0.8947 10 8 8.2783 1.2788 0.1151 11 7 7.6111 1.6273 2.2058 12 6 6.5032 1.8145 3.1460 13 6 8.9934 1.6395 2.6908 14 6 9.5281 3.0479 2.6488 15 1 8.9007 3.8533 2.2965 16 6 10.8178 3.3083 3.0610 17 7 11.5815 2.3275 3.4904 18 14 11.4802 5.0541 3.0096 19 1 11.1957 5.7297 4.3009 20 1 12.9472 5.0204 2.7812 21 1 10.8244 5.8000 1.9056 22 16 4.5222 1.4496 1.4047 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8932 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 6.7959 2.4708 -2.3169 31 1 7.4740 0.9293 -1.7403 32 1 6.1178 0.9292 -2.8932 33 1 6.1091 0.8422 3.4413 34 1 6.8614 2.3447 4.0285 35 1 5.7152 2.3961 2.6677 36 1 9.0220 1.2704 3.7160 37 1 9.6066 0.9991 2.0568 38 1 12.4886 2.5108 3.7808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298486178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:34 Heat of formation + Delta-G solvation = -3.190331 kcal Electronic energy + Delta-G solvation = -19769.316001 eV Core-core repulsion = 16738.430224 eV Total energy + Delta-G solvation = -3030.885776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03722 -38.66563 -35.45584 -34.97336 -32.72075 -31.59844 -28.82797 -28.21038 -27.40989 -25.82450 -23.40869 -23.11315 -21.47176 -20.52300 -18.11964 -17.89687 -16.59203 -16.23649 -15.48356 -15.24982 -15.13662 -14.73432 -14.24934 -14.01601 -13.65118 -13.41360 -13.02070 -12.66586 -12.61699 -12.32724 -12.28717 -12.19563 -11.86573 -11.67454 -11.42883 -11.28990 -11.13300 -11.01331 -10.91504 -10.65866 -10.19939 -9.74291 -9.45303 -9.13295 -9.09056 -8.54906 -8.47886 -7.74735 -6.09222 -4.14494 0.48992 1.38618 1.79080 2.70952 3.27829 3.34776 3.39135 3.68807 3.84004 4.05084 4.41419 4.68112 4.74179 4.82253 5.04504 5.24691 5.25663 5.28066 5.35699 5.40964 5.45565 5.50181 5.68516 5.75241 5.85746 5.93520 5.98873 6.02307 6.06837 6.10934 6.62612 6.93343 7.34139 7.41059 7.82297 7.86637 8.15538 8.22721 8.79218 8.94543 9.50789 10.98876 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030406 B = 0.004056 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.659886 B = 6902.333562 C = 7255.694327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.043 4.043 4 C 0.019 3.981 5 N -0.479 5.479 6 C 0.135 3.865 7 C -0.090 4.090 8 C -0.282 4.282 9 C 0.582 3.418 10 O -0.521 6.521 11 N -0.593 5.593 12 C 0.071 3.929 13 C 0.247 3.753 14 C -0.530 4.530 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.274 1.274 22 S 0.180 5.820 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.346 -3.284 -3.148 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.083 4.083 4 C -0.256 4.256 5 N -0.194 5.194 6 C -0.002 4.002 7 C -0.149 4.149 8 C -0.406 4.406 9 C 0.367 3.633 10 O -0.400 6.400 11 N -0.324 5.324 12 C -0.075 4.075 13 C 0.129 3.871 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.198 1.198 22 S 0.439 5.561 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.163 -3.404 -2.875 20.649 hybrid contribution 0.884 1.079 -0.574 1.508 sum -19.279 -2.325 -3.448 19.722 Atomic orbital electron populations 1.21762 0.95039 1.01990 1.02020 1.21523 0.96088 0.95163 1.02972 1.20301 0.85297 0.98653 1.04081 1.27765 1.01851 1.01741 0.94248 1.66096 1.04369 1.16858 1.32106 1.20574 0.89885 0.96023 0.93753 1.20668 0.97375 1.03519 0.93313 1.25820 0.98354 1.19382 0.97049 1.16702 0.85295 0.78322 0.82936 1.90743 1.44249 1.50556 1.54461 1.48057 1.09683 1.69026 1.05631 1.21877 0.89473 1.00899 0.95218 1.19390 0.74552 0.98071 0.95134 1.21416 0.98365 0.93400 1.43662 0.92378 1.24927 0.96497 0.97548 0.95006 1.69925 1.08638 1.31402 1.43270 0.86476 0.78194 0.84321 0.78342 1.20593 1.21004 1.19843 1.84301 0.95700 1.66564 1.09546 0.92481 0.92398 0.92503 0.91603 0.91259 0.89112 0.89722 0.90529 0.87682 0.91284 0.92693 0.88765 0.92171 0.94575 0.93380 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 3 C -0.04 -0.39 5.79 -27.88 -0.16 -0.55 16 4 C 0.02 0.24 6.64 -13.29 -0.09 0.15 16 5 N -0.48 -7.58 10.50 -7.70 -0.08 -7.66 16 6 C 0.13 2.34 6.79 -83.89 -0.57 1.77 16 7 C -0.09 -1.46 9.81 36.01 0.35 -1.11 16 8 C -0.28 -5.11 6.24 -37.10 -0.23 -5.35 16 9 C 0.58 12.81 7.62 -12.85 -0.10 12.71 16 10 O -0.52 -13.11 13.85 5.19 0.07 -13.04 16 11 N -0.59 -12.86 2.86 -184.50 -0.53 -13.38 16 12 C 0.07 1.16 8.95 59.85 0.54 1.70 16 13 C 0.25 6.41 5.14 -5.19 -0.03 6.38 16 14 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 15 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 18 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 22 S 0.18 2.40 18.11 -107.50 -1.95 0.46 16 23 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 1.91 5.84 -51.92 -0.30 1.61 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.76 7.82 -51.93 -0.41 0.35 16 34 H 0.09 1.50 8.02 -51.93 -0.42 1.08 16 35 H 0.06 0.89 4.61 -23.72 -0.11 0.78 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.05 1.39 7.41 -51.93 -0.38 1.01 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -32.60 328.29 -7.71 -40.31 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.39 Total: -3.26 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.50 Total: 0.44 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.13 Total: -46.56 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.95 Total: 0.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.60 -7.71 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298486178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.121 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds