Wall clock time and date at job start Tue Mar 31 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47124 * 2 1 4 4 C 1.50700 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.29429 * 124.80154 * 90.02493 * 4 3 2 6 6 C 1.30942 * 117.36115 * 179.97438 * 5 4 3 7 7 C 1.50704 * 122.90023 * 179.97438 * 6 5 4 8 8 C 1.35656 * 114.19379 * 0.02562 * 6 5 4 9 9 C 1.46680 * 126.13207 * 180.02562 * 8 6 5 10 10 O 1.21694 * 120.00089 * 350.92424 * 9 8 6 11 11 N 1.34780 * 120.00144 * 170.92586 * 9 8 6 12 12 C 1.46500 * 119.99902 * 0.51590 * 11 9 8 13 13 C 1.46504 * 119.99888 * 180.51752 * 11 9 8 14 14 C 1.50707 * 109.46922 * 89.99663 * 13 11 9 15 15 H 1.08003 * 119.99842 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99936 * 179.97438 * 14 13 11 17 17 N 1.31511 * 119.99796 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00036 * 180.02562 * 16 14 13 19 19 H 1.48488 * 109.47185 * 90.00270 * 18 16 14 20 20 H 1.48502 * 109.47096 * 210.00712 * 18 16 14 21 21 H 1.48503 * 109.46761 * 330.00398 * 18 16 14 22 22 S 1.70953 * 124.80539 * 269.72089 * 4 3 2 23 23 H 1.09007 * 109.47215 * 60.00078 * 1 2 3 24 24 H 1.08999 * 109.47394 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47708 * 300.00310 * 1 2 3 26 26 H 1.08996 * 109.46612 * 119.99547 * 2 1 3 27 27 H 1.08990 * 109.47199 * 239.99698 * 2 1 3 28 28 H 1.08997 * 109.46926 * 300.00087 * 3 2 1 29 29 H 1.09001 * 109.47081 * 59.99306 * 3 2 1 30 30 H 1.09004 * 109.46879 * 90.02863 * 7 6 5 31 31 H 1.09008 * 109.46871 * 210.02333 * 7 6 5 32 32 H 1.08997 * 109.47351 * 330.02227 * 7 6 5 33 33 H 1.09000 * 109.46659 * 83.50911 * 12 11 9 34 34 H 1.09003 * 109.47133 * 203.50535 * 12 11 9 35 35 H 1.09001 * 109.46896 * 323.50475 * 12 11 9 36 36 H 1.08997 * 109.46722 * 209.99324 * 13 11 9 37 37 H 1.08996 * 109.47326 * 330.00259 * 13 11 9 38 38 H 0.96996 * 120.00051 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2862 1.4428 -1.0618 6 6 5.5845 1.4433 -0.8917 7 6 6.5605 1.4431 -2.0400 8 6 5.9750 1.4428 0.4074 9 6 7.3585 1.4437 0.8947 10 8 8.2783 1.2788 0.1151 11 7 7.6111 1.6273 2.2058 12 6 6.5032 1.8145 3.1460 13 6 8.9934 1.6395 2.6908 14 6 9.5281 3.0479 2.6488 15 1 8.9007 3.8533 2.2965 16 6 10.8178 3.3083 3.0610 17 7 11.5815 2.3275 3.4904 18 14 11.4802 5.0541 3.0096 19 1 11.1957 5.7297 4.3009 20 1 12.9472 5.0204 2.7812 21 1 10.8244 5.8000 1.9056 22 16 4.5222 1.4496 1.4047 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8932 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 6.7959 2.4708 -2.3169 31 1 7.4740 0.9293 -1.7403 32 1 6.1178 0.9292 -2.8932 33 1 6.1091 0.8422 3.4413 34 1 6.8614 2.3447 4.0285 35 1 5.7152 2.3961 2.6677 36 1 9.0220 1.2704 3.7160 37 1 9.6066 0.9991 2.0568 38 1 12.4886 2.5108 3.7808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298486178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:34 Heat of formation + Delta-G solvation = -24.154183 kcal Electronic energy + Delta-G solvation = -19770.225062 eV Core-core repulsion = 16738.430224 eV Total energy + Delta-G solvation = -3031.794837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38615 -40.21596 -36.78819 -36.17742 -34.80741 -32.75278 -30.57253 -29.12952 -28.88103 -27.47579 -25.15024 -24.21783 -22.24299 -22.05278 -19.57362 -19.16671 -18.72705 -17.67504 -17.07958 -16.69959 -16.37825 -15.90340 -15.65297 -15.36680 -14.80211 -14.59707 -14.41238 -14.20586 -13.99668 -13.90295 -13.44295 -13.34941 -13.17208 -12.97614 -12.82199 -12.59236 -12.53633 -12.36300 -12.21106 -12.06731 -11.78200 -11.61624 -10.86897 -10.66657 -10.55578 -10.35922 -9.88617 -9.40218 -8.25054 -6.39916 -0.75293 0.19144 0.60409 1.35999 1.39110 1.41509 1.49811 2.07664 2.24395 2.39492 2.98724 3.05125 3.60152 3.82261 4.04601 4.07937 4.11033 4.13387 4.42909 4.49469 4.64844 4.68325 4.71537 4.75923 4.83370 4.86411 4.96056 4.97058 5.16185 5.23867 5.27818 5.35014 5.46874 5.47873 5.74323 6.00804 6.48615 6.65588 6.68038 7.15815 7.33156 8.82290 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030406 B = 0.004056 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.659886 B = 6902.333562 C = 7255.694327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.045 4.045 4 C 0.033 3.967 5 N -0.501 5.501 6 C 0.137 3.863 7 C -0.089 4.089 8 C -0.332 4.332 9 C 0.575 3.425 10 O -0.571 6.571 11 N -0.602 5.602 12 C 0.066 3.934 13 C 0.262 3.738 14 C -0.547 4.547 15 H 0.051 0.949 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.968 3.032 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.275 1.275 22 S 0.249 5.751 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.005 0.995 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.364 -2.237 -2.359 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.085 4.085 4 C -0.240 4.240 5 N -0.216 5.216 6 C -0.002 4.002 7 C -0.147 4.147 8 C -0.455 4.455 9 C 0.363 3.637 10 O -0.453 6.453 11 N -0.332 5.332 12 C -0.078 4.078 13 C 0.142 3.858 14 C -0.585 4.585 15 H 0.069 0.931 16 C -0.188 4.188 17 N -0.565 5.565 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.205 1.205 21 H -0.200 1.200 22 S 0.510 5.490 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.023 0.977 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.233 -2.358 -2.041 23.442 hybrid contribution 1.673 0.692 -0.837 1.994 sum -21.560 -1.666 -2.878 21.815 Atomic orbital electron populations 1.21738 0.93293 1.02590 1.02827 1.21516 0.97537 0.94097 1.02404 1.20601 0.82193 0.99814 1.05930 1.28592 1.03611 0.98143 0.93684 1.66200 1.03523 1.18779 1.33125 1.20736 0.90829 0.94888 0.93714 1.20600 0.96573 1.03488 0.94077 1.25445 0.98289 1.23085 0.98724 1.17210 0.86726 0.77221 0.82516 1.90701 1.46411 1.52586 1.55609 1.48016 1.09369 1.69153 1.06659 1.22158 0.88293 1.03003 0.94374 1.18879 0.76709 0.96336 0.93903 1.21654 0.98932 0.94066 1.43847 0.93052 1.25815 0.96674 1.01887 0.94391 1.70034 1.09068 1.33564 1.43810 0.85417 0.77418 0.79091 0.78901 1.18615 1.20510 1.20034 1.83797 0.92158 1.65335 1.07747 0.92168 0.91982 0.91222 0.91325 0.92804 0.88355 0.86784 0.90398 0.90205 0.89194 0.89759 0.88372 0.90398 0.94785 0.97718 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 3 C -0.04 -0.65 5.79 29.85 0.17 -0.48 16 4 C 0.03 0.78 6.64 88.46 0.59 1.37 16 5 N -0.50 -15.05 10.50 -178.29 -1.87 -16.92 16 6 C 0.14 4.75 6.79 42.09 0.29 5.03 16 7 C -0.09 -2.97 9.81 71.24 0.70 -2.27 16 8 C -0.33 -11.99 6.24 23.88 0.15 -11.84 16 9 C 0.58 26.26 7.62 86.45 0.66 26.92 16 10 O -0.57 -30.64 13.85 -4.33 -0.06 -30.70 16 11 N -0.60 -26.69 2.86 -855.86 -2.45 -29.14 16 12 C 0.07 2.05 8.95 127.77 1.14 3.19 16 13 C 0.26 14.19 5.14 85.63 0.44 14.63 16 14 C -0.55 -31.57 9.39 25.60 0.24 -31.33 16 15 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 16 C 0.01 0.68 5.46 84.66 0.46 1.14 16 17 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 18 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 S 0.25 5.99 18.11 -56.49 -1.02 4.97 16 23 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.08 3.11 5.84 -2.38 -0.01 3.10 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.08 2.13 7.82 -2.39 -0.02 2.11 16 34 H 0.10 2.99 8.02 -2.39 -0.02 2.97 16 35 H 0.08 2.13 4.61 -20.32 -0.09 2.04 16 36 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 37 H 0.00 0.29 7.41 -2.39 -0.02 0.27 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -73.75 328.29 3.61 -70.14 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.97 Total: 5.59 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.73 Total: 4.42 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -4.03 Total: -101.24 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.06 Total: -30.70 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 5.99 SS G_CDS: -1.02 Total: 4.97 kcal Total: -73.75 3.61 -70.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298486178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.984 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds