Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46802 * 2 1 4 4 N 1.46505 * 109.46962 * 180.02562 * 3 2 1 5 5 C 1.37105 * 119.99680 * 270.00109 * 4 3 2 6 6 H 1.08002 * 119.99871 * 145.32509 * 5 4 3 7 7 C 1.38947 * 120.00109 * 325.32519 * 5 4 3 8 8 N 1.31416 * 119.99981 * 337.24693 * 7 5 4 9 9 Si 1.86802 * 120.00143 * 157.24559 * 7 5 4 10 10 H 1.48500 * 109.46735 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47164 * 119.99745 * 9 7 5 12 12 H 1.48498 * 109.46898 * 239.99974 * 9 7 5 13 13 C 1.34767 * 120.00310 * 90.00430 * 4 3 2 14 14 O 1.21300 * 119.99951 * 4.87853 * 13 4 3 15 15 C 1.50702 * 120.00244 * 184.88754 * 13 4 3 16 16 C 1.52997 * 109.47136 * 177.73317 * 15 13 4 17 17 C 1.50699 * 109.47062 * 179.97438 * 16 15 13 18 18 S 1.76196 * 126.03801 * 269.97454 * 17 16 15 19 19 C 1.70982 * 90.28151 * 180.02562 * 18 17 16 20 20 N 1.29023 * 110.17017 * 0.02562 * 19 18 17 21 21 C 1.31784 * 117.12166 * 0.02562 * 20 19 18 22 22 C 1.50701 * 122.74945 * 179.72770 * 21 20 19 23 23 H 1.08996 * 109.46987 * 299.99324 * 1 2 3 24 24 H 1.08994 * 109.47295 * 59.99752 * 1 2 3 25 25 H 1.09005 * 109.46969 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46973 * 240.00268 * 2 1 3 27 27 H 1.08994 * 109.47295 * 120.00248 * 2 1 3 28 28 H 1.09003 * 109.47138 * 60.00368 * 3 2 1 29 29 H 1.08998 * 109.47798 * 300.00486 * 3 2 1 30 30 H 0.96999 * 119.99568 * 184.96013 * 8 7 5 31 31 H 1.08995 * 109.47151 * 57.72957 * 15 13 4 32 32 H 1.09000 * 109.46828 * 297.73067 * 15 13 4 33 33 H 1.09002 * 109.47099 * 59.99958 * 16 15 13 34 34 H 1.09002 * 109.47554 * 299.99757 * 16 15 13 35 35 H 1.08000 * 124.91247 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.46904 * 90.02337 * 22 21 20 37 37 H 1.08996 * 109.47367 * 210.02351 * 22 21 20 38 38 H 1.08992 * 109.47139 * 330.02629 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4423 1.1865 6 1 5.1272 0.9102 1.2691 7 6 3.6817 2.1267 2.2833 8 7 2.8293 3.1110 2.1057 9 14 4.2087 1.6477 4.0102 10 1 5.1685 0.5168 3.9389 11 1 4.8590 2.8087 4.6692 12 1 3.0171 1.2364 4.7951 13 6 4.1784 1.4428 -1.1680 14 8 3.5748 1.5324 -2.2163 15 6 5.6813 1.3317 -1.1710 16 6 6.1874 1.2989 -2.6145 17 6 7.6903 1.1884 -2.6175 18 16 8.8286 2.5333 -2.6157 19 6 10.1391 1.4351 -2.6219 20 7 9.7023 0.2211 -2.6253 21 6 8.3952 0.0530 -2.6240 22 6 7.7483 -1.3081 -2.6335 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 2.5291 3.6354 2.8645 31 1 5.9789 0.4156 -0.6608 32 1 6.1102 2.1907 -0.6550 33 1 5.8898 2.2150 -3.1247 34 1 5.7586 0.4399 -3.1305 35 1 11.1817 1.7169 -2.6237 36 1 7.5940 -1.6442 -1.6081 37 1 6.7877 -1.2502 -3.1453 38 1 8.3953 -2.0142 -3.1539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299044464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = -8.832222 kcal Electronic energy + Delta-G solvation = -19999.444443 eV Core-core repulsion = 16968.314016 eV Total energy + Delta-G solvation = -3031.130427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.79784 -38.62008 -35.33577 -33.83003 -32.78780 -31.34701 -30.60707 -27.57081 -25.84601 -24.98713 -24.33293 -22.63599 -20.60311 -19.06933 -18.64566 -17.95160 -16.83816 -16.02035 -15.46802 -14.81552 -14.66482 -14.36084 -14.27411 -13.86640 -13.46370 -13.11120 -12.95143 -12.52658 -12.41664 -12.16043 -12.07433 -11.69853 -11.44680 -11.35972 -11.28181 -11.09253 -10.98247 -10.65424 -10.41784 -10.33884 -10.25588 -9.75072 -9.55013 -9.21045 -9.08217 -8.61748 -8.36476 -7.51937 -6.41526 -4.07299 0.84348 1.49421 1.88615 2.89524 3.06239 3.18587 3.21968 3.86854 4.07585 4.31582 4.68680 4.93187 5.15793 5.26138 5.31078 5.60137 5.67882 5.76211 5.77538 5.81465 5.92205 5.99213 6.02176 6.12970 6.35473 6.38655 6.50272 6.53111 6.59043 6.65826 6.68859 6.80282 7.11773 7.34087 7.50747 7.81484 7.92275 8.34471 9.03818 9.49526 9.92839 10.59946 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.004997 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.540826 B = 5602.522921 C = 6416.716122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.437 5.437 5 C -0.342 4.342 6 H 0.090 0.910 7 C 0.045 3.955 8 N -0.858 5.858 9 Si 0.911 3.089 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.468 3.532 14 O -0.609 6.609 15 C -0.111 4.111 16 C -0.027 4.027 17 C -0.195 4.195 18 S 0.115 5.885 19 C 0.004 3.996 20 N -0.467 5.467 21 C 0.047 3.953 22 C -0.077 4.077 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.270 0.730 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.195 0.805 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -3.242 -4.760 9.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.015 4.015 4 N -0.154 5.154 5 C -0.470 4.470 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.494 5.494 9 Si 0.738 3.262 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.204 1.204 13 C 0.257 3.743 14 O -0.496 6.496 15 C -0.152 4.152 16 C -0.067 4.067 17 C -0.316 4.316 18 S 0.368 5.632 19 C -0.294 4.294 20 N -0.181 5.181 21 C -0.084 4.084 22 C -0.136 4.136 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.212 0.788 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.521 -2.428 -5.117 9.415 hybrid contribution 0.126 -0.826 1.147 1.419 sum 7.647 -3.255 -3.969 9.210 Atomic orbital electron populations 1.21658 0.96601 1.00424 1.01417 1.21815 0.94680 0.99436 1.01160 1.21494 0.81529 0.94648 1.03781 1.43470 1.04775 1.62662 1.04525 1.19451 1.07606 1.32639 0.87309 0.89193 1.25325 0.96525 0.94053 1.00187 1.69867 1.31926 1.15745 1.31870 0.86124 0.78725 0.78931 0.82456 1.19141 1.20696 1.20417 1.20299 0.89012 0.80810 0.84150 1.90520 1.70477 1.56579 1.32059 1.21336 0.94798 1.03801 0.95271 1.19874 0.84501 1.04290 0.98063 1.25948 1.01663 0.94210 1.09761 1.84076 0.98580 1.12552 1.67994 1.28147 1.04240 0.91081 1.05947 1.66148 1.14455 1.22412 1.15057 1.20200 0.87514 0.96865 1.03810 1.20355 0.99815 0.90395 1.03075 0.92965 0.93151 0.93640 0.93196 0.92296 0.87481 0.92740 0.91943 0.90198 0.89571 0.90141 0.89342 0.78828 0.90604 0.90438 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.68 6.26 -26.73 -0.17 -2.85 16 3 C 0.11 2.59 5.04 -4.04 -0.02 2.57 16 4 N -0.44 -10.81 2.54 -114.81 -0.29 -11.10 16 5 C -0.34 -8.48 8.73 -14.93 -0.13 -8.61 16 6 H 0.09 2.14 6.95 -52.49 -0.36 1.77 16 7 C 0.05 1.12 4.95 -17.47 -0.09 1.03 16 8 N -0.86 -22.29 11.34 55.50 0.63 -21.66 16 9 Si 0.91 19.14 29.61 -169.99 -5.03 14.10 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.47 11.09 7.62 -10.99 -0.08 11.00 16 14 O -0.61 -15.60 15.54 5.54 0.09 -15.52 16 15 C -0.11 -2.16 4.31 -27.88 -0.12 -2.28 16 16 C -0.03 -0.46 4.72 -27.88 -0.13 -0.59 16 17 C -0.19 -2.96 5.84 -35.92 -0.21 -3.17 16 18 S 0.11 1.48 23.22 -107.50 -2.50 -1.02 16 19 C 0.00 0.05 12.23 51.58 0.63 0.68 16 20 N -0.47 -6.91 10.53 -11.89 -0.13 -7.03 16 21 C 0.05 0.70 6.74 -84.22 -0.57 0.13 16 22 C -0.08 -0.99 10.06 36.01 0.36 -0.63 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.11 2.70 5.36 -51.93 -0.28 2.42 16 29 H 0.05 1.35 7.36 -51.93 -0.38 0.96 16 30 H 0.27 6.60 8.32 -40.82 -0.34 6.26 16 31 H 0.08 1.48 7.68 -51.93 -0.40 1.08 16 32 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 33 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 34 H 0.09 1.47 6.73 -51.93 -0.35 1.12 16 35 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.95 6.71 -51.93 -0.35 0.60 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -29.06 330.87 -7.88 -36.95 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.48 Total: 5.03 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.16 Total: -4.74 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.21 Total: -39.79 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.50 Total: -1.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.06 -7.88 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299044464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.113 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds