Wall clock time and date at job start Tue Mar 31 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46575 * 2 1 4 4 H 1.08998 * 109.47208 * 304.99935 * 3 2 1 5 5 C 1.50706 * 109.46635 * 184.99974 * 3 2 1 6 6 H 1.07997 * 120.00308 * 239.99516 * 5 3 2 7 7 C 1.37882 * 119.99823 * 60.00272 * 5 3 2 8 8 N 1.31507 * 120.00341 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99833 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46897 * 59.99973 * 9 7 5 11 11 H 1.48493 * 109.47161 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47544 * 300.00186 * 9 7 5 13 13 N 1.46496 * 109.47389 * 65.00518 * 3 2 1 14 14 C 1.34776 * 119.99485 * 274.99341 * 13 3 2 15 15 O 1.21286 * 120.00454 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99741 * 179.97438 * 14 13 3 17 17 C 1.53007 * 109.47143 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47143 * 179.97438 * 17 16 14 19 19 S 1.76194 * 126.04025 * 269.97719 * 18 17 16 20 20 C 1.70968 * 90.28454 * 180.02562 * 19 18 17 21 21 N 1.29025 * 110.17021 * 359.97438 * 20 19 18 22 22 C 1.31784 * 117.12258 * 359.97438 * 21 20 19 23 23 C 1.50700 * 122.74936 * 179.72958 * 22 21 20 24 24 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47373 * 299.99524 * 1 2 3 26 26 H 1.09002 * 109.47236 * 60.00063 * 1 2 3 27 27 H 1.09003 * 109.46683 * 240.00190 * 2 1 3 28 28 H 1.08995 * 109.46871 * 119.99939 * 2 1 3 29 29 H 0.96993 * 120.00471 * 180.02562 * 8 7 5 30 30 H 0.96996 * 120.00491 * 94.99806 * 13 3 2 31 31 H 1.08997 * 109.47521 * 60.00718 * 16 14 13 32 32 H 1.08999 * 109.47590 * 299.99793 * 16 14 13 33 33 H 1.09000 * 109.47059 * 60.00278 * 17 16 14 34 34 H 1.08999 * 109.47336 * 300.00048 * 17 16 14 35 35 H 1.08008 * 124.91782 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.47218 * 90.03005 * 23 22 21 37 37 H 1.09007 * 109.46702 * 210.02827 * 23 22 21 38 38 H 1.08999 * 109.46968 * 330.02330 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0048 0.8814 -1.3819 10 1 6.5974 0.1473 -0.2349 11 1 6.3977 0.2169 -2.6504 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3397 2.6319 0.4344 16 6 0.0362 3.3376 2.6548 17 6 -1.3831 3.8935 2.5214 18 6 -1.7822 4.5662 3.8096 19 16 -2.5853 3.7961 5.1757 20 6 -2.5828 5.2801 6.0247 21 7 -2.0296 6.2007 5.3097 22 6 -1.5886 5.8521 4.1178 23 6 -0.9279 6.8256 3.1762 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0617 -2.9495 30 1 2.2719 2.1232 1.9977 31 1 0.7275 4.1530 2.8679 32 1 0.0672 2.6130 3.4684 33 1 -2.0742 3.0779 2.3086 34 1 -1.4145 4.6181 1.7078 35 1 -2.9859 5.4259 7.0160 36 1 0.1474 6.8309 3.3546 37 1 -1.1239 6.5254 2.1467 38 1 -1.3293 7.8247 3.3459 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299156176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:24 Heat of formation + Delta-G solvation = -14.972099 kcal Electronic energy + Delta-G solvation = -19689.463004 eV Core-core repulsion = 16658.066331 eV Total energy + Delta-G solvation = -3031.396672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07122 -39.03987 -35.31280 -34.11996 -32.38716 -31.28548 -30.62026 -27.91504 -26.75621 -25.07514 -23.57681 -22.68571 -20.17109 -19.30729 -18.91614 -18.22407 -17.13854 -15.98850 -15.61644 -15.33996 -14.95356 -14.88154 -14.23726 -13.75003 -13.47300 -13.27310 -12.80428 -12.71241 -12.60632 -12.41561 -12.03125 -11.89336 -11.57216 -11.35176 -11.24999 -11.00017 -10.84268 -10.78422 -10.33917 -10.17953 -9.78966 -9.64303 -9.42949 -9.07753 -9.00844 -8.76747 -8.50427 -7.82569 -6.13282 -4.22898 0.57446 1.23254 1.62137 2.64740 3.24464 3.30088 3.30923 3.40014 4.03045 4.12496 4.36497 4.87125 4.94509 5.01610 5.11939 5.17897 5.26622 5.49202 5.56980 5.63316 5.74155 5.79976 6.03095 6.05588 6.25399 6.38097 6.44445 6.64989 7.02785 7.18590 7.35974 7.45374 7.57528 7.60868 7.72455 7.89384 8.17495 8.66722 8.76661 9.13433 9.44706 10.91944 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028852 B = 0.003503 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.231581 B = 7991.057074 C = 8444.994302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.550 6.550 16 C -0.137 4.137 17 C -0.025 4.025 18 C -0.206 4.206 19 S 0.115 5.885 20 C 0.010 3.990 21 N -0.467 5.467 22 C 0.054 3.946 23 C -0.080 4.080 24 H 0.022 0.978 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.197 0.803 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 6.956 14.138 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.430 6.430 16 C -0.178 4.178 17 C -0.066 4.066 18 C -0.327 4.327 19 S 0.368 5.632 20 C -0.288 4.288 21 N -0.181 5.181 22 C -0.077 4.077 23 C -0.139 4.139 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.213 0.787 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.280 6.363 13.759 18.316 hybrid contribution 1.665 0.490 -0.003 1.735 sum -8.615 6.853 13.755 17.618 Atomic orbital electron populations 1.21837 0.98369 0.97988 1.01201 1.21935 0.92599 0.99879 1.02243 1.18770 0.94127 0.89165 0.81100 0.93319 1.21208 0.90785 1.39121 1.06285 0.92179 1.24883 0.98573 0.94799 0.95386 1.69875 1.35228 1.37502 1.09355 0.86526 0.84905 0.78318 0.77455 1.20178 1.21131 1.20181 1.46506 1.14685 1.55902 1.18518 1.20277 0.82821 0.79407 0.88949 1.90674 1.51423 1.60151 1.40743 1.21691 0.97167 1.01287 0.97687 1.19797 0.95865 1.00335 0.90559 1.25864 1.07870 0.97122 1.01838 1.84088 1.54715 1.15302 1.09082 1.28220 1.03916 0.91997 1.04649 1.66177 1.11736 1.34844 1.05310 1.20260 1.01733 0.93106 0.92582 1.20398 1.00001 0.96995 0.96545 0.95916 0.94315 0.93145 0.88322 0.95100 0.92500 0.77989 0.89247 0.89568 0.89748 0.88696 0.78654 0.90525 0.90266 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.47 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -14.06 5.02 -54.93 -0.28 -14.34 16 14 C 0.50 9.21 6.40 -10.99 -0.07 9.14 16 15 O -0.55 -12.01 13.12 5.55 0.07 -11.94 16 16 C -0.14 -1.82 5.68 -27.88 -0.16 -1.98 16 17 C -0.03 -0.32 4.72 -27.88 -0.13 -0.45 16 18 C -0.21 -2.41 5.84 -35.92 -0.21 -2.62 16 19 S 0.11 1.12 23.22 -107.50 -2.50 -1.38 16 20 C 0.01 0.10 12.23 51.58 0.63 0.73 16 21 N -0.47 -5.71 10.53 -11.90 -0.13 -5.83 16 22 C 0.05 0.65 6.74 -84.22 -0.57 0.09 16 23 C -0.08 -0.82 10.06 36.01 0.36 -0.46 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 26 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 27 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 6.70 8.54 -40.82 -0.35 6.36 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.09 1.24 6.71 -51.93 -0.35 0.89 16 35 H 0.20 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.78 6.71 -51.92 -0.35 0.43 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -30.31 325.98 -8.20 -38.51 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.37 Total: 6.04 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.52 Total: -7.50 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.22 Total: -44.01 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.38 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.31 -8.20 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299156176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.538 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds