Wall clock time and date at job start Tue Mar 31 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46575 * 2 1 4 4 H 1.08998 * 109.47208 * 304.99935 * 3 2 1 5 5 C 1.50706 * 109.46635 * 184.99974 * 3 2 1 6 6 H 1.07997 * 120.00308 * 239.99516 * 5 3 2 7 7 C 1.37882 * 119.99823 * 60.00272 * 5 3 2 8 8 N 1.31507 * 120.00341 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99833 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46897 * 59.99973 * 9 7 5 11 11 H 1.48493 * 109.47161 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47544 * 300.00186 * 9 7 5 13 13 N 1.46496 * 109.47389 * 65.00518 * 3 2 1 14 14 C 1.34776 * 119.99485 * 274.99341 * 13 3 2 15 15 O 1.21286 * 120.00454 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99741 * 179.97438 * 14 13 3 17 17 C 1.53007 * 109.47143 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47143 * 179.97438 * 17 16 14 19 19 S 1.76194 * 126.04025 * 269.97719 * 18 17 16 20 20 C 1.70968 * 90.28454 * 180.02562 * 19 18 17 21 21 N 1.29025 * 110.17021 * 359.97438 * 20 19 18 22 22 C 1.31784 * 117.12258 * 359.97438 * 21 20 19 23 23 C 1.50700 * 122.74936 * 179.72958 * 22 21 20 24 24 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47373 * 299.99524 * 1 2 3 26 26 H 1.09002 * 109.47236 * 60.00063 * 1 2 3 27 27 H 1.09003 * 109.46683 * 240.00190 * 2 1 3 28 28 H 1.08995 * 109.46871 * 119.99939 * 2 1 3 29 29 H 0.96993 * 120.00471 * 180.02562 * 8 7 5 30 30 H 0.96996 * 120.00491 * 94.99806 * 13 3 2 31 31 H 1.08997 * 109.47521 * 60.00718 * 16 14 13 32 32 H 1.08999 * 109.47590 * 299.99793 * 16 14 13 33 33 H 1.09000 * 109.47059 * 60.00278 * 17 16 14 34 34 H 1.08999 * 109.47336 * 300.00048 * 17 16 14 35 35 H 1.08008 * 124.91782 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.47218 * 90.03005 * 23 22 21 37 37 H 1.09007 * 109.46702 * 210.02827 * 23 22 21 38 38 H 1.08999 * 109.46968 * 330.02330 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0048 0.8814 -1.3819 10 1 6.5974 0.1473 -0.2349 11 1 6.3977 0.2169 -2.6504 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3397 2.6319 0.4344 16 6 0.0362 3.3376 2.6548 17 6 -1.3831 3.8935 2.5214 18 6 -1.7822 4.5662 3.8096 19 16 -2.5853 3.7961 5.1757 20 6 -2.5828 5.2801 6.0247 21 7 -2.0296 6.2007 5.3097 22 6 -1.5886 5.8521 4.1178 23 6 -0.9279 6.8256 3.1762 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0617 -2.9495 30 1 2.2719 2.1232 1.9977 31 1 0.7275 4.1530 2.8679 32 1 0.0672 2.6130 3.4684 33 1 -2.0742 3.0779 2.3086 34 1 -1.4145 4.6181 1.7078 35 1 -2.9859 5.4259 7.0160 36 1 0.1474 6.8309 3.3546 37 1 -1.1239 6.5254 2.1467 38 1 -1.3293 7.8247 3.3459 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299156176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:23 Heat of formation + Delta-G solvation = -34.288933 kcal Electronic energy + Delta-G solvation = -19690.300644 eV Core-core repulsion = 16658.066331 eV Total energy + Delta-G solvation = -3032.234313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00118 -40.51347 -37.04558 -35.24418 -34.26052 -32.86316 -31.78077 -29.30313 -28.24708 -25.97891 -25.07829 -24.11833 -21.87566 -21.00602 -19.76437 -19.06046 -18.82899 -17.43892 -17.17083 -16.78397 -16.19516 -16.11478 -15.70491 -14.92428 -14.75381 -14.59436 -14.40967 -13.75626 -13.56674 -13.49496 -13.40611 -13.31593 -13.13253 -12.94233 -12.86413 -12.64446 -12.37424 -12.17223 -12.02310 -11.77199 -11.55738 -11.03987 -10.68711 -10.58077 -10.48821 -10.15196 -9.63377 -9.57334 -8.14569 -6.31810 -0.22817 0.45224 0.83073 1.45686 1.46993 1.54763 1.81326 1.92161 2.38039 2.71244 3.14767 3.36672 3.80401 3.98403 4.05909 4.27700 4.35325 4.42340 4.51673 4.59772 4.64870 4.73284 4.76857 4.80351 4.94378 5.07920 5.09257 5.09990 5.28902 5.39681 5.46498 5.58616 5.66852 5.82664 5.96220 6.19945 6.77036 6.77705 7.05045 7.35891 7.65029 8.90351 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028852 B = 0.003503 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.231581 B = 7991.057074 C = 8444.994302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.708 5.708 14 C 0.498 3.502 15 O -0.588 6.588 16 C -0.121 4.121 17 C -0.017 4.017 18 C -0.228 4.228 19 S 0.143 5.857 20 C 0.020 3.980 21 N -0.498 5.498 22 C 0.048 3.952 23 C -0.082 4.082 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.403 0.597 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 7.210 16.617 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.469 6.469 16 C -0.162 4.162 17 C -0.057 4.057 18 C -0.349 4.349 19 S 0.397 5.603 20 C -0.277 4.277 21 N -0.212 5.212 22 C -0.083 4.083 23 C -0.141 4.141 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.238 0.762 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.247 0.753 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.932 6.625 16.280 20.189 hybrid contribution 1.466 0.436 -0.727 1.694 sum -8.466 7.061 15.552 19.063 Atomic orbital electron populations 1.21676 0.96885 0.99079 1.00370 1.21785 0.93842 0.99273 1.01164 1.18331 0.93443 0.89157 0.81646 0.98374 1.21583 0.91653 1.38881 1.06632 0.91105 1.25752 1.03161 0.94442 0.95084 1.70034 1.37078 1.38344 1.09870 0.85464 0.79332 0.78433 0.77501 1.18993 1.21299 1.19662 1.46290 1.15811 1.56100 1.17460 1.21137 0.81632 0.78446 0.90246 1.90664 1.52335 1.61265 1.42645 1.21619 0.97885 1.01844 0.94835 1.19608 0.95204 0.99776 0.91158 1.25709 1.09514 0.97453 1.02201 1.83990 1.53808 1.14765 1.07754 1.28864 1.01963 0.91468 1.05433 1.66243 1.13324 1.35903 1.05767 1.20491 1.01530 0.93429 0.92876 1.20440 1.00333 0.96985 0.96331 0.93758 0.93459 0.95581 0.91208 0.94159 0.92652 0.76233 0.87272 0.87330 0.90763 0.89712 0.75331 0.89898 0.90304 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.51 71.98 0.61 -4.80 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.28 13.94 2.24 44.25 0.10 14.04 16 4 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 5 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.91 -52.01 11.29 21.45 0.24 -51.77 16 9 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 N -0.71 -27.77 5.02 -446.10 -2.24 -30.01 16 14 C 0.50 18.10 6.40 87.66 0.56 18.66 16 15 O -0.59 -26.13 13.12 -3.05 -0.04 -26.17 16 16 C -0.12 -3.00 5.68 29.85 0.17 -2.83 16 17 C -0.02 -0.42 4.72 29.85 0.14 -0.28 16 18 C -0.23 -4.96 5.84 24.64 0.14 -4.81 16 19 S 0.14 2.43 23.22 -56.49 -1.31 1.12 16 20 C 0.02 0.33 12.23 130.65 1.60 1.93 16 21 N -0.50 -11.15 10.53 -191.55 -2.02 -13.17 16 22 C 0.05 1.08 6.74 41.52 0.28 1.36 16 23 C -0.08 -1.60 10.06 71.24 0.72 -0.88 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.97 5.65 -2.39 -0.01 1.96 16 26 H 0.02 1.24 7.85 -2.39 -0.02 1.22 16 27 H 0.07 3.82 5.95 -2.39 -0.01 3.81 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.40 13.32 8.54 -92.71 -0.79 12.53 16 31 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 34 H 0.08 2.22 6.71 -2.39 -0.02 2.20 16 35 H 0.23 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.51 6.71 -2.38 -0.02 1.50 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -66.58 325.98 2.10 -64.48 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.28 Total: 22.32 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 5.16 Total: -10.47 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -4.02 Total: -94.95 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.04 Total: -26.17 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.12 kcal Total: -66.58 2.10 -64.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299156176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.187 kcal (2) G-P(sol) polarization free energy of solvation -66.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds