Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47099 * 2 1 4 4 C 1.34778 * 119.99792 * 84.99700 * 3 2 1 5 5 O 1.21652 * 119.99881 * 0.02562 * 4 3 2 6 6 C 1.46762 * 120.00182 * 180.02562 * 4 3 2 7 7 C 1.34617 * 120.00182 * 188.52944 * 6 4 3 8 8 C 1.47397 * 120.00063 * 31.96011 * 7 6 4 9 9 C 1.40644 * 119.27747 * 185.60085 * 8 7 6 10 10 C 1.36325 * 119.79436 * 179.97438 * 9 8 7 11 11 C 1.40888 * 118.30378 * 359.97438 * 10 9 8 12 12 C 1.40363 * 121.21735 * 180.27895 * 11 10 9 13 13 C 1.36174 * 119.65979 * 180.24561 * 12 11 10 14 14 C 1.39404 * 120.90324 * 359.49367 * 13 12 11 15 15 C 1.36034 * 121.06317 * 0.23447 * 14 13 12 16 16 C 1.40788 * 119.74183 * 0.02562 * 15 14 13 17 17 N 1.32148 * 119.27810 * 5.61764 * 8 7 6 18 18 C 1.50701 * 109.47376 * 239.99999 * 2 1 3 19 19 N 1.27943 * 119.99728 * 124.99786 * 18 2 1 20 20 Si 1.86793 * 119.99888 * 304.99989 * 18 2 1 21 21 H 1.48498 * 109.47475 * 359.97438 * 20 18 2 22 22 H 1.48505 * 109.47147 * 120.00256 * 20 18 2 23 23 H 1.48503 * 109.47179 * 239.99798 * 20 18 2 24 24 H 1.08998 * 109.47539 * 299.99898 * 1 2 3 25 25 H 1.08997 * 109.46797 * 60.00468 * 1 2 3 26 26 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47249 * 119.99717 * 2 1 3 28 28 H 0.96998 * 120.00521 * 265.00386 * 3 2 1 29 29 H 1.08004 * 119.99467 * 8.52175 * 6 4 3 30 30 H 1.07998 * 119.99755 * 211.95795 * 7 6 4 31 31 H 1.07995 * 120.09834 * 359.97438 * 9 8 7 32 32 H 1.07994 * 120.84449 * 180.02562 * 10 9 8 33 33 H 1.07997 * 120.16776 * 0.02562 * 12 11 10 34 34 H 1.07998 * 119.55269 * 179.74928 * 13 12 11 35 35 H 1.07996 * 119.46902 * 180.25670 * 14 13 12 36 36 H 1.08004 * 120.12551 * 180.02562 * 15 14 13 37 37 H 0.96997 * 120.00037 * 179.97438 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1470 2.0505 1.1628 5 8 1.8580 1.5074 2.2123 6 6 2.6356 3.4344 1.1628 7 6 2.9276 4.0451 2.3264 8 6 3.4426 3.2594 3.4622 9 6 3.6304 3.8894 4.7056 10 6 4.1057 3.1726 5.7633 11 6 4.3948 1.8075 5.5692 12 6 4.8813 1.0107 6.6174 13 6 5.1550 -0.3042 6.3931 14 6 4.9489 -0.8745 5.1379 15 6 4.4735 -0.1345 4.1002 16 6 4.1835 1.2300 4.2906 17 7 3.7181 1.9785 3.2899 18 6 2.0324 -0.7104 -1.2304 19 7 2.8448 -0.1199 -2.0231 20 14 1.4690 -2.4529 -1.5983 21 1 0.5374 -2.9069 -0.5347 22 1 0.7747 -2.4820 -2.9107 23 1 2.6475 -3.3555 -1.6418 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 0.8900 28 1 2.2490 1.8142 -0.8368 29 1 2.7611 3.9627 0.2292 30 1 2.7845 5.1107 2.4277 31 1 3.3987 4.9378 4.8219 32 1 4.2558 3.6392 6.7256 33 1 5.0410 1.4392 7.5957 34 1 5.5331 -0.9147 7.1998 35 1 5.1699 -1.9208 4.9869 36 1 4.3191 -0.5920 3.1341 37 1 3.1685 -0.5773 -2.8149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299735074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = 89.391187 kcal Electronic energy + Delta-G solvation = -21601.656849 eV Core-core repulsion = 18425.686018 eV Total energy + Delta-G solvation = -3175.970831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61139 -40.43970 -38.28900 -37.47311 -34.66080 -34.34227 -34.01757 -31.74576 -30.95203 -30.22691 -26.26254 -25.23011 -24.31082 -23.16340 -22.76271 -20.84451 -20.34720 -19.15559 -18.11851 -17.97959 -17.81957 -16.80183 -16.27793 -15.88584 -15.44519 -15.37469 -15.19408 -15.02170 -14.72659 -14.67350 -14.40446 -14.06623 -13.90353 -13.85392 -13.40473 -13.26962 -12.77252 -12.67381 -12.47298 -12.40204 -12.21300 -12.05847 -11.52889 -11.36077 -10.67550 -10.47861 -10.07930 -10.04778 -9.61350 -9.27539 -8.78610 -0.71455 -0.16123 0.62810 0.69917 0.93460 1.29184 1.33327 1.61274 1.75406 2.23918 2.60624 2.70873 3.30107 3.34228 3.42669 3.70305 3.83652 3.98463 4.04769 4.14913 4.27067 4.29058 4.33152 4.37037 4.48472 4.52835 4.62180 4.64144 4.89434 4.94555 4.98608 5.04258 5.18278 5.19727 5.27036 5.30388 5.36253 5.56056 5.61778 5.74977 5.75363 6.04669 6.74998 6.92214 7.19816 7.70556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 N -0.713 5.713 4 C 0.547 3.453 5 O -0.513 6.513 6 C -0.171 4.171 7 C -0.042 4.042 8 C 0.161 3.839 9 C -0.153 4.153 10 C -0.069 4.069 11 C -0.098 4.098 12 C -0.102 4.102 13 C -0.114 4.114 14 C -0.109 4.109 15 C -0.081 4.081 16 C 0.130 3.870 17 N -0.410 5.410 18 C -0.016 4.016 19 N -0.628 5.628 20 Si 0.938 3.062 21 H -0.228 1.228 22 H -0.239 1.239 23 H -0.242 1.242 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.407 0.593 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 0.466 -1.120 1.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 N -0.367 5.367 4 C 0.335 3.665 5 O -0.388 6.388 6 C -0.195 4.195 7 C -0.062 4.062 8 C 0.011 3.989 9 C -0.172 4.172 10 C -0.095 4.095 11 C -0.100 4.100 12 C -0.121 4.121 13 C -0.132 4.132 14 C -0.128 4.128 15 C -0.100 4.100 16 C 0.006 3.994 17 N -0.118 5.118 18 C -0.265 4.265 19 N -0.241 5.241 20 Si 0.753 3.247 21 H -0.150 1.150 22 H -0.162 1.162 23 H -0.166 1.166 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.127 0.873 28 H 0.243 0.757 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.252 -0.331 -1.339 1.402 hybrid contribution 0.262 0.210 0.032 0.337 sum 0.010 -0.121 -1.308 1.313 Atomic orbital electron populations 1.22197 0.93856 1.02981 1.03497 1.20108 0.94185 0.82934 0.95803 1.45804 1.67783 1.13379 1.09724 1.18315 0.78709 0.86004 0.83459 1.90809 1.49179 1.67969 1.30873 1.23149 1.01833 0.95777 0.98692 1.22233 0.94153 0.99001 0.90797 1.20117 0.96319 0.89879 0.92566 1.21861 1.00886 1.01464 0.93037 1.21356 0.96084 0.92644 0.99378 1.18965 1.01208 0.94784 0.95065 1.20993 0.98814 0.94144 0.98104 1.20970 0.99533 0.95295 0.97355 1.20920 0.98817 1.00305 0.92804 1.20831 0.97805 0.91581 0.99773 1.18886 0.97049 0.94575 0.88873 1.68350 1.06910 1.04440 1.32069 1.30719 0.94080 1.05808 0.95892 1.67995 1.08524 1.40949 1.06663 0.85579 0.82197 0.74116 0.82790 1.14951 1.16192 1.16561 0.90706 0.91850 0.91155 0.87286 0.75718 0.84395 0.83519 0.84454 0.84362 0.85323 0.85520 0.85343 0.85037 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.03 9.04 37.16 0.34 0.37 16 2 C 0.18 0.14 2.69 -69.08 -0.19 -0.04 16 3 N -0.71 -1.07 4.90 -56.22 -0.28 -1.35 16 4 C 0.55 1.90 6.96 -12.82 -0.09 1.81 16 5 O -0.51 -3.44 12.91 5.23 0.07 -3.37 16 6 C -0.17 -0.19 9.89 -37.42 -0.37 -0.56 16 7 C -0.04 -0.04 9.75 -37.14 -0.36 -0.40 16 8 C 0.16 0.60 6.13 -83.10 -0.51 0.09 16 9 C -0.15 -0.27 9.73 -39.36 -0.38 -0.65 16 10 C -0.07 -0.13 9.88 -39.27 -0.39 -0.52 16 11 C -0.10 -0.37 5.75 -106.70 -0.61 -0.98 16 12 C -0.10 -0.19 9.76 -39.52 -0.39 -0.58 16 13 C -0.11 -0.15 9.96 -39.89 -0.40 -0.55 16 14 C -0.11 -0.20 9.94 -39.94 -0.40 -0.60 16 15 C -0.08 -0.32 9.99 -39.41 -0.39 -0.72 16 16 C 0.13 0.71 6.61 -84.85 -0.56 0.15 16 17 N -0.41 -2.39 6.22 -7.66 -0.05 -2.44 16 18 C -0.02 0.01 5.37 -13.90 -0.07 -0.07 16 19 N -0.63 -0.07 12.48 56.23 0.70 0.63 16 20 Si 0.94 -1.48 28.01 -169.99 -4.76 -6.24 16 21 H -0.23 0.33 6.70 56.52 0.38 0.71 16 22 H -0.24 0.25 7.11 56.52 0.40 0.66 16 23 H -0.24 0.15 7.11 56.52 0.40 0.55 16 24 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.07 -0.11 6.38 -51.93 -0.33 -0.44 16 27 H 0.11 0.20 7.58 -51.93 -0.39 -0.19 16 28 H 0.41 0.13 7.73 -40.82 -0.32 -0.19 16 29 H 0.14 -0.27 8.06 -52.48 -0.42 -0.70 16 30 H 0.15 -0.38 8.06 -52.49 -0.42 -0.81 16 31 H 0.14 -0.20 8.06 -52.49 -0.42 -0.62 16 32 H 0.14 -0.13 8.06 -52.49 -0.42 -0.56 16 33 H 0.13 -0.07 8.06 -52.49 -0.42 -0.49 16 34 H 0.13 -0.13 8.06 -52.49 -0.42 -0.55 16 35 H 0.13 -0.07 8.06 -52.49 -0.42 -0.49 16 36 H 0.13 0.45 8.06 -52.48 -0.42 0.02 16 37 H 0.34 -0.50 8.23 -40.82 -0.34 -0.84 16 LS Contribution 317.54 15.07 4.79 4.79 Total: 0.00 -7.23 317.54 -8.73 -15.96 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -4.42 Total: -4.73 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -4.77 Total: -3.25 kcal Atomic # 7 Polarization: -3.53 SS G_CDS: 0.38 Total: -3.15 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: 0.07 Total: -3.37 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: -4.76 Total: -6.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -7.23 -8.73 -15.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299735074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.347 kcal (2) G-P(sol) polarization free energy of solvation -7.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds